Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0008722

Physical Location & Seq

Genomic Coordinates Reverse (-)

11872653 .. 11875998

Gene Structure 3346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1150500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGACATCGATTCAGATTTCCAGAAAATTAACATCAAATCGCAGGAGGAAGGAGGTGGCGCGCCGATACCCATGGACTCCGAAGACTCTTCCACCATTCAGAATAAGGGCAAAGAAGATGAGGAACTTACTGATTCGATGAAGAAACTGCAAGTTGAGGAATCATCGTCAGGGCAGTCGGGGTCCAATTTCAAGAGAAAACCTGTTATTATAATTGTGGTGGGCATGGCAGGGAGTGGTAAAACAACCTTTATGCAGCAGTTGGTTTCACACACTCGTGAATCCGACATTCGTGGCTATGTGATGAACCTTGACCCAGCTGTGATGACTTTACCGTTTGGTGCAAATATTGACATAAGGGATACCGTTCGGTACAAGGAGGTGATGAAGCAATTCAATCTTGGACCAAATGGGGGGATTTTGACTTCACTCAACTTGTTTGCTACCAAGTTTGATGAGGTTGTTTCAGTCATTGAGAAGCGAGCGCATCAGCTTGATTATGTTCTTGTGGATACTCCGGGTCAGATTGAGATATTCACTTGGTCTGCCTCTGGTGCTATCATCACAGAAGCGTTTGCATCAACGTTTCCTACTGTAATTGCTTATGTGGTAGATACACCTCGTTCTGCTAGCCCGGTTACTTTTATGAGCAACATGCTTTATGCTTGTAGTATCCTTTACAAGACAAGGTTACCTCTTGTGTTGGCATTCAACAAGATTGACGTGGCTCAACATCAGTTTGCTTTGGAGTGGATGGAGGACTTTGAGACATTTCAAGCAGCAGTGAGTGCAGATAGTTCATACTCTTCAAATTTAGCTCAGAGCCTCTCCCTTGTGCTGGATGAATTCTATAAGAACTTGCGGTCTGTTGGAGTTTCTGCAGTTTCTGGTGCTGGAATGAAGGATTTCTTTAAGGCCGTTGAAGCTAGTGCTGAGGAGTACATGGACAGCTATAAGGCTGATCTGGACAAAAGACGGGCAGAGAAGCAACGTTTGGAGGAGGAACACAGAAAGGAGAACATGGAGAAGTTGAGGAAGGATATGGAGAAGTCCGGGGGAGAAACTGTGGTCTTGAGCACTGGTTTGAAGGACAAAGGTGAGAGGGGCAAAGCCATGATGGATGAGGACGAGGAAGATCAAGTTGAAGAGGAAGATGAGATGTTCACCGAAGATGAGGACGGTATAGACGAAGATGAAGATGAAGAGGCTGAAAGGTTCACATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005874 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP_bind_1

Protein Analysis

409

Amino Acids

45.65

Weight (kDa)

4.49

Isoelectric Point (pI)

49.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU	PF00009	69 - 309	1.4e-06	Elongation factor Tu GTP binding domain
ATP_bind_1	PF03029	73 - 311	8.3e-81	Conserved hypothetical ATP binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21800 AT4G21800
fragaria_vesca	FvH4_4g12660 FvH4_4g12660
malus_domestica	MD12G1007400.v1.1 MD13G1150100.v1.1 MD14G1004700.v1.1 MD16G1150500.v1.1
prunus_persica	Prupe.1G114400_v2.0.a1
pyrus_communis	pycom12g00540 pycom14g00320 pycom16g12890
rosa_chinensis	RchiOBHm_Chr4g0411531
rosa_laevigata	RLG00000008348
rosa_multiflora	Rmu_sc0001868.1_g000001
rosa_roxburghii	Rroxscaffold_5G00356100
rosa_rugosa	Rorug04G0108000
rosa_samantha	Rh4AG168800 Rh4BG165400 Rh4CG180200 Rh4DG163100
rosa_wichuraiana	Rw0G020790 Rw4G014020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	212
AccII	CGCG	1 cut(s)	62
AciI	CCGC	1 cut(s)	862
AclI	AACGTT	2 cut(s)	584, 991
AcsI	RAATTY	2 cut(s)	811, 845
AfaI	GTAC	2 cut(s)	374, 941
AfiI	CCNNNNNNNGG	2 cut(s)	413, 838
AgsI	TTSAA	8 cut(s)	193, 397, 712, 776, 810, 923, 1087, 1145
AjiI	CACGTC	1 cut(s)	724
AjuI	GAANNNNNNNTTGG	2 cut(s)	977, 1009
AleI	CACNNNNGTG	1 cut(s)	276
AluBI	AGCT	5 cut(s)	320, 493, 818, 926, 951
AluI	AGCT	5 cut(s)	320, 493, 818, 926, 951
Alw21I	GWGCWC	1 cut(s)	1079
Alw26I	GTCTC	1 cut(s)	761
AlwNI	CAGNNNCTG	1 cut(s)	887
AoxI	GGCC	1 cut(s)	915
ApeKI	GCWGC	2 cut(s)	256, 779
ApoI	RAATTY	2 cut(s)	811, 845
AscI	GGCGCGCC	1 cut(s)	60
Asp700I	GAANNNNTTC	2 cut(s)	392, 905
AspLEI	GCGC	3 cut(s)	62, 64, 487
AspS9I	GGNCC	2 cut(s)	183, 404
AsuC2I	CCSGG	3 cut(s)	519, 635, 1054
AsuHPI	GGTGA	3 cut(s)	394, 1109, 1156
AsuNHI	GCTAGC	1 cut(s)	629
AvaII	GGWCC	2 cut(s)	183, 404
BauI	CACGAG	1 cut(s)	276
BbsI	GAAGAC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	1079
BbvCI	CCTCAGC	1 cut(s)	933
BbvI	GCAGC	2 cut(s)	268, 791
BccI	CCATC	2 cut(s)	748, 1111
BceAI	ACGGC	1 cut(s)	902
BciVI	GTATCC	3 cut(s)	355, 505, 683
BcnI	CCSGG	3 cut(s)	519, 635, 1054
BcoDI	GTCTC	1 cut(s)	761
BfaI	CTAG	2 cut(s)	630, 927
BfmI	CTRYAG	1 cut(s)	879
BfuI	GTATCC	3 cut(s)	355, 505, 683
BisI	GCNGC	2 cut(s)	257, 780
BlsI	GCNGC	2 cut(s)	258, 781
Bme1390I	CCNGG	3 cut(s)	519, 635, 1054
Bme18I	GGWCC	2 cut(s)	183, 404
BmgBI	CACGTC	1 cut(s)	724
BmgT120I	GGNCC	2 cut(s)	183, 404
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	3 cut(s)	519, 635, 1054
BmsI	GCATC	2 cut(s)	496, 587
BmtI	GCTAGC	1 cut(s)	633
BpiI	GAAGAC	1 cut(s)	90
Bpu10I	CCTNAGC	1 cut(s)	933
BpuEI	CTTGAG	1 cut(s)	1093
BpuMI	CCSGG	3 cut(s)	519, 635, 1054
Bsa29I	ATCGAT	1 cut(s)	9
BsaJI	CCNNGG	2 cut(s)	72, 1053
BsaXI	ACNNNNNCTCC	2 cut(s)	1050, 1080
Bsc4I	CCNNNNNNNGG	2 cut(s)	413, 838
Bse1I	ACTGG	1 cut(s)	1084
BseCI	ATCGAT	1 cut(s)	9
BseDI	CCNNGG	2 cut(s)	72, 1053
BseGI	GGATG	3 cut(s)	759, 847, 1126
BseLI	CCNNNNNNNGG	2 cut(s)	413, 838
BseMII	CTCAG	2 cut(s)	833, 924
BseNI	ACTGG	1 cut(s)	1084
BsePI	GCGCGC	1 cut(s)	60
BseRI	GAGGAG	2 cut(s)	950, 1013
BseXI	GCAGC	2 cut(s)	268, 791
BseYI	CCCAGC	1 cut(s)	316
BsgI	GTGCAG	1 cut(s)	810
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	1 cut(s)	917
BshVI	ATCGAT	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	1079
BsiSI	CCGG	3 cut(s)	518, 635, 1053
BslI	CCNNNNNNNGG	2 cut(s)	413, 838
BsmAI	GTCTC	1 cut(s)	761
BsmI	GAATGC	1 cut(s)	707
BsnI	GGCC	1 cut(s)	917
Bsp1286I	GDGCHC	1 cut(s)	1079
Bsp143I	GATC	2 cut(s)	961, 1135
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	1 cut(s)	862
BspANI	GGCC	1 cut(s)	917
BspCNI	CTCAG	2 cut(s)	832, 925
BspDI	ATCGAT	1 cut(s)	9
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	1 cut(s)	184
BspMAI	CTGCAG	1 cut(s)	883
BspOI	GCTAGC	1 cut(s)	633
BsrI	ACTGG	1 cut(s)	1084
BssECI	CCNNGG	2 cut(s)	72, 1053
BssHII	GCGCGC	1 cut(s)	60
BssMI	GATC	2 cut(s)	961, 1135
BssSI	CACGAG	1 cut(s)	276
BssT1I	CCWWGG	1 cut(s)	72
Bst2BI	CACGAG	1 cut(s)	276
Bst4CI	ACNGT	5 cut(s)	336, 367, 595, 1066, 1181
Bst6I	CTCTTC	4 cut(s)	94, 811, 1140, 1197
BstAPI	GCANNNNNTGC	1 cut(s)	788
BstC8I	GCNNGC	3 cut(s)	62, 483, 631
BstDEI	CTNAG	2 cut(s)	819, 933
BstDSI	CCRYGG	1 cut(s)	72
BstEII	GGTNACC	1 cut(s)	690
BstF5I	GGATG	3 cut(s)	759, 847, 1126
BstFNI	CGCG	1 cut(s)	62
BstHHI	GCGC	3 cut(s)	62, 64, 487
BstKTI	GATC	2 cut(s)	964, 1138
BstMAI	GTCTC	1 cut(s)	761
BstMBI	GATC	2 cut(s)	961, 1135
BstMWI	GCNNNNNNNGC	3 cut(s)	554, 788, 923
BstNSI	RCATGY	1 cut(s)	658
BstPI	GGTNACC	1 cut(s)	690
BstSCI	CCNGG	3 cut(s)	517, 633, 1052
BstSFI	CTRYAG	1 cut(s)	879
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	2 cut(s)	268, 791
BstV2I	GAAGAC	1 cut(s)	90
Bsu15I	ATCGAT	1 cut(s)	9
BsuI	GTATCC	3 cut(s)	355, 505, 683
BsuRI	GGCC	1 cut(s)	917
BsuTUI	ATCGAT	1 cut(s)	9
BtgI	CCRYGG	1 cut(s)	72
BtrI	CACGTC	1 cut(s)	724
BtsCI	GGATG	3 cut(s)	759, 847, 1126
BtsI	GCAGTG	1 cut(s)	789
BtsIMutI	CAGTG	2 cut(s)	789, 1077
Cac8I	GCNNGC	3 cut(s)	62, 483, 631
CaiI	CAGNNNCTG	1 cut(s)	887
CfoI	GCGC	3 cut(s)	62, 64, 487
Cfr13I	GGNCC	2 cut(s)	183, 404
ClaI	ATCGAT	1 cut(s)	9
Csp6I	GTAC	2 cut(s)	373, 940
CviAII	CATG	6 cut(s)	73, 226, 655, 943, 1021, 1114
CviQI	GTAC	2 cut(s)	373, 940
DdeI	CTNAG	2 cut(s)	819, 933
DpnI	GATC	2 cut(s)	963, 1137
DpnII	GATC	2 cut(s)	961, 1135
Eam1104I	CTCTTC	4 cut(s)	94, 811, 1140, 1197
EarI	CTCTTC	4 cut(s)	94, 811, 1140, 1197
Eco130I	CCWWGG	1 cut(s)	72
Eco47I	GGWCC	2 cut(s)	183, 404
Eco91I	GGTNACC	1 cut(s)	690
EcoO65I	GGTNACC	1 cut(s)	690
EcoRI	GAATTC	1 cut(s)	845
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	6 cut(s)	76, 229, 658, 946, 1024, 1117
FalI	AAGNNNNNCTT	2 cut(s)	893, 925
FatI	CATG	6 cut(s)	72, 225, 654, 942, 1020, 1113
Fnu4HI	GCNGC	2 cut(s)	257, 780
FokI	GGATG	3 cut(s)	766, 854, 1133
Fsp4HI	GCNGC	2 cut(s)	257, 780
FspBI	CTAG	2 cut(s)	630, 927
GlaI	GCGC	3 cut(s)	61, 63, 486
GluI	GCNGC	2 cut(s)	257, 780
GsaI	CCCAGC	1 cut(s)	320
HaeIII	GGCC	1 cut(s)	917
HapII	CCGG	3 cut(s)	518, 635, 1053
HhaI	GCGC	3 cut(s)	62, 64, 487
Hin1II	CATG	6 cut(s)	76, 229, 658, 946, 1024, 1117
Hin6I	GCGC	3 cut(s)	60, 62, 485
HinP1I	GCGC	3 cut(s)	60, 62, 485
HinfI	GANTC	6 cut(s)	11, 77, 86, 134, 161, 281
HpaII	CCGG	3 cut(s)	518, 635, 1053
HphI	GGTGA	3 cut(s)	394, 1109, 1156
Hpy166II	GTNNAC	2 cut(s)	1164, 1218
Hpy188I	TCNGA	6 cut(s)	16, 82, 102, 286, 525, 822
Hpy188III	TCNNGA	5 cut(s)	22, 193, 278, 965, 1072
Hpy8I	GTNNAC	2 cut(s)	1164, 1218
HpyAV	CCTTC	4 cut(s)	44, 895, 1030, 1081
HpyCH4III	ACNGT	5 cut(s)	336, 367, 595, 1066, 1181
HpyCH4IV	ACGT	3 cut(s)	584, 723, 991
HpyCH4V	TGCA	6 cut(s)	151, 256, 344, 578, 791, 881
HpyF10VI	GCNNNNNNNGC	3 cut(s)	554, 788, 923
HpyF3I	CTNAG	2 cut(s)	819, 933
HpySE526I	ACGT	3 cut(s)	584, 723, 991
Hsp92II	CATG	6 cut(s)	76, 229, 658, 946, 1024, 1117
HspAI	GCGC	3 cut(s)	60, 62, 485
Kzo9I	GATC	2 cut(s)	961, 1135
Lsp1109I	GCAGC	2 cut(s)	268, 791
LweI	GCATC	2 cut(s)	496, 587
MaeI	CTAG	2 cut(s)	630, 927
MaeII	ACGT	3 cut(s)	584, 723, 991
MaeIII	GTNAC	2 cut(s)	637, 690
MalI	GATC	2 cut(s)	963, 1137
MboI	GATC	2 cut(s)	961, 1135
MhlI	GDGCHC	1 cut(s)	1079
MluCI	AATT	7 cut(s)	27, 187, 213, 392, 597, 811, 845
MlyI	GAGTC	2 cut(s)	71, 80
MmeI	TCCRAC	2 cut(s)	309, 850
MroXI	GAANNNNTTC	2 cut(s)	392, 905
MseI	TTAA	2 cut(s)	30, 912
MslI	CAYNNNNRTG	1 cut(s)	276
MspA1I	CMGCKG	1 cut(s)	320
MspI	CCGG	3 cut(s)	518, 635, 1053
MspR9I	CCNGG	3 cut(s)	519, 635, 1054
Mva1269I	GAATGC	1 cut(s)	707
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	3 cut(s)	554, 788, 923
NciI	CCSGG	3 cut(s)	519, 635, 1054
NcoI	CCATGG	1 cut(s)	72
NdeII	GATC	2 cut(s)	961, 1135
NheI	GCTAGC	1 cut(s)	629
NlaIII	CATG	6 cut(s)	76, 229, 658, 946, 1024, 1117
NlaIV	GGNNCC	1 cut(s)	184
NspI	RCATGY	1 cut(s)	658
OliI	CACNNNNGTG	1 cut(s)	276
PalAI	GGCGCGCC	1 cut(s)	60
PauI	GCGCGC	1 cut(s)	60
PcsI	WCGNNNNNNNCGW	1 cut(s)	1185
PctI	GAATGC	1 cut(s)	707
PdmI	GAANNNNTTC	2 cut(s)	392, 905
PfeI	GAWTC	4 cut(s)	11, 134, 161, 281
PkrI	GCNGC	2 cut(s)	258, 781
PleI	GAGTC	2 cut(s)	71, 80
PpsI	GAGTC	2 cut(s)	71, 80
PsiI	TTATAA	1 cut(s)	212
Psp1406I	AACGTT	2 cut(s)	584, 991
PspEI	GGTNACC	1 cut(s)	690
PspFI	CCCAGC	1 cut(s)	316
PspN4I	GGNNCC	1 cut(s)	184
PspPI	GGNCC	2 cut(s)	183, 404
PstI	CTGCAG	1 cut(s)	883
PstNI	CAGNNNCTG	1 cut(s)	887
PteI	GCGCGC	1 cut(s)	60
PvuII	CAGCTG	1 cut(s)	320
RsaI	GTAC	2 cut(s)	374, 941
RsaNI	GTAC	2 cut(s)	373, 940
RseI	CAYNNNNRTG	1 cut(s)	276
SaqAI	TTAA	2 cut(s)	30, 912
SatI	GCNGC	2 cut(s)	257, 780
Sau3AI	GATC	2 cut(s)	961, 1135
Sau96I	GGNCC	2 cut(s)	183, 404
SchI	GAGTC	2 cut(s)	71, 80
ScrFI	CCNGG	3 cut(s)	519, 635, 1054
SduI	GDGCHC	1 cut(s)	1079
SfaNI	GCATC	2 cut(s)	496, 587
SfcI	CTRYAG	1 cut(s)	879
SgsI	GGCGCGCC	1 cut(s)	60
SinI	GGWCC	2 cut(s)	183, 404
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	1 cut(s)	1072
SmoI	CTYRAG	1 cut(s)	1072
Sse9I	AATT	7 cut(s)	27, 187, 213, 392, 597, 811, 845
SsiI	CCGC	1 cut(s)	862
SspI	AATATT	1 cut(s)	349
SspMI	CTAG	2 cut(s)	630, 927
StyD4I	CCNGG	3 cut(s)	517, 633, 1052
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	5 cut(s)	336, 367, 595, 1066, 1181
TaiI	ACGT	3 cut(s)	587, 726, 994
TaqI	TCGA	2 cut(s)	9, 137
TasI	AATT	7 cut(s)	27, 187, 213, 392, 597, 811, 845
TatI	WGTACW	1 cut(s)	939
TfiI	GAWTC	4 cut(s)	11, 134, 161, 281
Tru1I	TTAA	2 cut(s)	30, 912
Tru9I	TTAA	2 cut(s)	30, 912
TscAI	CASTG	2 cut(s)	789, 1084
TseI	GCWGC	2 cut(s)	256, 779
TspDTI	ATGAA	8 cut(s)	155, 320, 401, 789, 858, 914, 1209, 1215
TspRI	CASTG	2 cut(s)	789, 1084
VpaK11BI	GGWCC	2 cut(s)	183, 404
XapI	RAATTY	2 cut(s)	811, 845
XceI	RCATGY	1 cut(s)	658
XmnI	GAANNNNTTC	2 cut(s)	392, 905
XspI	CTAG	2 cut(s)	630, 927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.