Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0008722

Physical Location & Seq

Genomic Coordinates Reverse (-)

11772486 .. 11774904

Gene Structure 2419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1150100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCAAGAAGTGGTAAAACAACCTTTATGCGGCAGTTGGTTTCACACACTTACGAATCTCACATTCGTGGCTATGTGATGAACCTCGACTCAGCTGTGATGACTTTACCGTTTGATGCAAATATTGACATAAGGGATACCGTTCGGTACAAGGAAGTGATGAAACAGATCAATCTTGGACCAAATGAGGGGACGCTTGCCTGTGAATCTTGGATGAAAGATTTTGAGACATTTCAAGCAGCAAGCCTCTTCCTTGTGTTGGATGAATTCTATAAAAACTTGCGGTCTGTTGGAGTGTCTTCGGTTTCTGGTGCTGGAATGAAGGATTTCTTTAAAGCCGTTGAAGCAAGTGCTGAAGAGTACATGGAAAGCTATAAGGTTGATCTGGACAAGAGACCGGCGGAGAAGCAACGTTTAGAGGAGGAACACAGAAGGGAGAACATGGAGAAGTTGAGGAAGGATATGGAGAAGTCTGGGGGAGAAACTGTGGTCGTGAGCACTGGTTTGAAGGACAAAATAAGAGGGGCAAAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005874 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP_bind_1

Protein Analysis

179

Amino Acids

20.32

Weight (kDa)

6.34

Isoelectric Point (pI)

43.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP_bind_1	PF03029	1 - 68	2.1e-19	Conserved hypothetical ATP binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21800 AT4G21800
fragaria_vesca	FvH4_4g12660 FvH4_4g12660
malus_domestica	MD12G1007400.v1.1 MD13G1150100.v1.1 MD14G1004700.v1.1 MD16G1150500.v1.1
prunus_persica	Prupe.1G114400_v2.0.a1
pyrus_communis	pycom12g00540 pycom14g00320 pycom16g12890
rosa_chinensis	RchiOBHm_Chr4g0411531
rosa_laevigata	RLG00000008348
rosa_multiflora	Rmu_sc0001868.1_g000001
rosa_roxburghii	Rroxscaffold_5G00356100
rosa_rugosa	Rorug04G0108000
rosa_samantha	Rh4AG168800 Rh4BG165400 Rh4CG180200 Rh4DG163100
rosa_wichuraiana	Rw0G020790 Rw4G014020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	31, 283, 401
AclI	AACGTT	1 cut(s)	412
AcsI	RAATTY	1 cut(s)	266
AcuI	CTGAAG	1 cut(s)	375
AfaI	GTAC	2 cut(s)	149, 362
AfiI	CCNNNNNNNGG	3 cut(s)	30, 188, 259
AgsI	TTSAA	3 cut(s)	236, 344, 508
AleI	CACNNNNGTG	1 cut(s)	66
AluBI	AGCT	2 cut(s)	95, 372
AluI	AGCT	2 cut(s)	95, 372
Alw21I	GWGCWC	1 cut(s)	500
Alw26I	GTCTC	2 cut(s)	221, 388
ApeKI	GCWGC	1 cut(s)	239
ApoI	RAATTY	1 cut(s)	266
Asp700I	GAANNNNTTC	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	179
AvaII	GGWCC	1 cut(s)	179
BbsI	GAAGAC	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	500
BbvI	GCAGC	1 cut(s)	251
BceAI	ACGGC	1 cut(s)	323
BciVI	GTATCC	1 cut(s)	130
BcoDI	GTCTC	2 cut(s)	221, 388
BfuI	GTATCC	1 cut(s)	130
BisI	GCNGC	2 cut(s)	32, 240
BlsI	GCNGC	2 cut(s)	33, 241
Bme18I	GGWCC	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	179
BmsI	GCATC	1 cut(s)	106
BpiI	GAAGAC	1 cut(s)	291
BsaI	GGTCTC	1 cut(s)	388
BsaXI	ACNNNNNCTCC	2 cut(s)	471, 501
Bsc4I	CCNNNNNNNGG	3 cut(s)	30, 188, 259
Bse118I	RCCGGY	1 cut(s)	397
Bse1I	ACTGG	1 cut(s)	505
BseGI	GGATG	2 cut(s)	219, 268
BseLI	CCNNNNNNNGG	3 cut(s)	30, 188, 259
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	505
BseRI	GAGGAG	1 cut(s)	434
BseXI	GCAGC	1 cut(s)	251
BsiHKAI	GWGCWC	1 cut(s)	500
BsiSI	CCGG	1 cut(s)	398
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	3 cut(s)	30, 188, 259
BsmAI	GTCTC	2 cut(s)	221, 388
BsmFI	GGGAC	1 cut(s)	205
Bso31I	GGTCTC	1 cut(s)	388
Bsp1286I	GDGCHC	1 cut(s)	500
Bsp143I	GATC	2 cut(s)	168, 382
BspACI	CCGC	3 cut(s)	31, 283, 401
BspCNI	CTCAG	1 cut(s)	104
BspTNI	GGTCTC	1 cut(s)	388
BsrFI	RCCGGY	1 cut(s)	397
BsrI	ACTGG	1 cut(s)	505
BssAI	RCCGGY	1 cut(s)	397
BssMI	GATC	2 cut(s)	168, 382
Bst4CI	ACNGT	3 cut(s)	111, 142, 487
Bst6I	CTCTTC	2 cut(s)	254, 351
BstC8I	GCNNGC	2 cut(s)	198, 244
BstDEI	CTNAG	1 cut(s)	91
BstF5I	GGATG	2 cut(s)	219, 268
BstKTI	GATC	2 cut(s)	171, 385
BstMAI	GTCTC	2 cut(s)	221, 388
BstMBI	GATC	2 cut(s)	168, 382
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstV1I	GCAGC	1 cut(s)	251
BstV2I	GAAGAC	1 cut(s)	291
BsuI	GTATCC	1 cut(s)	130
BtsCI	GGATG	2 cut(s)	219, 268
BtsIMutI	CAGTG	1 cut(s)	498
Cac8I	GCNNGC	2 cut(s)	198, 244
Cfr10I	RCCGGY	1 cut(s)	397
Cfr13I	GGNCC	1 cut(s)	179
CseI	GACGC	1 cut(s)	202
Csp6I	GTAC	2 cut(s)	148, 361
CviAII	CATG	3 cut(s)	364, 442, 534
CviJI	RGCY	6 cut(s)	72, 95, 246, 338, 372, 532
CviKI_1	RGCY	6 cut(s)	72, 95, 246, 338, 372, 532
CviQI	GTAC	2 cut(s)	148, 361
DdeI	CTNAG	1 cut(s)	91
DpnI	GATC	2 cut(s)	170, 384
DpnII	GATC	2 cut(s)	168, 382
DraI	TTTAAA	1 cut(s)	334
Eam1104I	CTCTTC	2 cut(s)	254, 351
EarI	CTCTTC	2 cut(s)	254, 351
EciI	GGCGGA	1 cut(s)	416
Eco31I	GGTCTC	1 cut(s)	388
Eco47I	GGWCC	1 cut(s)	179
Eco57I	CTGAAG	1 cut(s)	375
EcoRI	GAATTC	1 cut(s)	266
FaeI	CATG	3 cut(s)	367, 445, 537
FaiI	YATR	9 cut(s)	29, 75, 131, 273, 365, 375, 443, 464, 535
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	3 cut(s)	363, 441, 533
Fnu4HI	GCNGC	2 cut(s)	32, 240
FokI	GGATG	2 cut(s)	226, 275
Fsp4HI	GCNGC	2 cut(s)	32, 240
GluI	GCNGC	2 cut(s)	32, 240
HapII	CCGG	1 cut(s)	398
HgaI	GACGC	1 cut(s)	202
Hin1II	CATG	3 cut(s)	367, 445, 537
HinfI	GANTC	3 cut(s)	56, 89, 206
HpaII	CCGG	1 cut(s)	398
Hpy188III	TCNNGA	2 cut(s)	386, 493
HpyAV	CCTTC	4 cut(s)	316, 426, 451, 502
HpyCH4III	ACNGT	3 cut(s)	111, 142, 487
HpyCH4IV	ACGT	1 cut(s)	412
HpyCH4V	TGCA	1 cut(s)	119
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpyF3I	CTNAG	1 cut(s)	91
HpySE526I	ACGT	1 cut(s)	412
Hsp92II	CATG	3 cut(s)	367, 445, 537
Kzo9I	GATC	2 cut(s)	168, 382
LpnPI	CCDG	7 cut(s)	214, 294, 300, 371, 411, 459, 486
Lsp1109I	GCAGC	1 cut(s)	251
LweI	GCATC	1 cut(s)	106
MaeII	ACGT	1 cut(s)	412
MalI	GATC	2 cut(s)	170, 384
MboI	GATC	2 cut(s)	168, 382
MboII	GAAGA	3 cut(s)	241, 291, 368
MhlI	GDGCHC	1 cut(s)	500
MluCI	AATT	1 cut(s)	266
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	2 cut(s)	240, 271
MnlI	CCTC	7 cut(s)	95, 181, 257, 412, 415, 447, 515
MroXI	GAANNNNTTC	1 cut(s)	326
MseI	TTAA	1 cut(s)	333
MslI	CAYNNNNRTG	1 cut(s)	66
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	1 cut(s)	398
MwoI	GCNNNNNNNGC	1 cut(s)	344
NdeII	GATC	2 cut(s)	168, 382
NlaIII	CATG	3 cut(s)	367, 445, 537
OliI	CACNNNNGTG	1 cut(s)	66
PdmI	GAANNNNTTC	1 cut(s)	326
PfeI	GAWTC	2 cut(s)	56, 206
PkrI	GCNGC	2 cut(s)	33, 241
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
Psp1406I	AACGTT	1 cut(s)	412
PspPI	GGNCC	1 cut(s)	179
PvuII	CAGCTG	1 cut(s)	95
RsaI	GTAC	2 cut(s)	149, 362
RsaNI	GTAC	2 cut(s)	148, 361
RseI	CAYNNNNRTG	1 cut(s)	66
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	2 cut(s)	32, 240
Sau3AI	GATC	2 cut(s)	168, 382
Sau96I	GGNCC	1 cut(s)	179
SchI	GAGTC	1 cut(s)	83
SduI	GDGCHC	1 cut(s)	500
SetI	ASST	6 cut(s)	26, 87, 97, 374, 381, 415
SfaNI	GCATC	1 cut(s)	106
SinI	GGWCC	1 cut(s)	179
SmiMI	CAYNNNNRTG	1 cut(s)	66
Sse9I	AATT	1 cut(s)	266
SsiI	CCGC	3 cut(s)	31, 283, 401
SspI	AATATT	1 cut(s)	124
TaaI	ACNGT	3 cut(s)	111, 142, 487
TaiI	ACGT	1 cut(s)	415
TaqI	TCGA	1 cut(s)	87
TasI	AATT	1 cut(s)	266
TatI	WGTACW	1 cut(s)	360
TauI	GCSGC	1 cut(s)	34
TfiI	GAWTC	2 cut(s)	56, 206
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TscAI	CASTG	1 cut(s)	505
TseI	GCWGC	1 cut(s)	239
TspDTI	ATGAA	5 cut(s)	95, 176, 230, 279, 335
TspRI	CASTG	1 cut(s)	505
VpaK11BI	GGWCC	1 cut(s)	179
XapI	RAATTY	1 cut(s)	266
XmnI	GAANNNNTTC	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.