Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008722

Physical Location & Seq

Genomic Coordinates Reverse (-)

9063193 .. 9066701

Gene Structure 3509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G114400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGACATTGATTCTGATTTCCATAAAATGAATATCAAACCACAAGAAGAAGGCGACACAAGGATACCCATGGACTCTGAAGGCTCTTCTAACGTTCAGAATGACAAGGGTAAAGAAAATGAGGAACTTACTAACTCAATGAAGAAACTGCAAGTTGAGGAGTCATCTTCGGGGCAGGCAGGGTCCAGCTTCAAGAAAAAACCAGTTATTATAATTGTTGTGGGCATGGCGGGGAGTGGTAAAACAACCTTTCTTCATCGGTTGGTTTCCCACACACGTGAGTCCAACGTACGTGGCTATGTGATGAATCTTGACCCAGCTGTGATGACTCTCCCATTCGGGGCAAACATCGACATAAGGGATACTGTTCGCTACAAGGAGGTGATGAAACAGTTCAATCTTGGACCAAACGGGGGAATTTTGACCTCACTCAACTTGTTTGCTACCAAGTTTGATGAGGTTGTCTCAGTCATTGAGAAGCGAGCAGATCAACTTGATTATGTTCTTGTGGATACTCCTGGTCAGATTGAGATATTCACATGGTCCGCTTCTGGTGCTATCATCACAGAAGCATTTGCTTCAACATTTCCTACTGTGATCGCTTACGTGGTAGATACACCTCGTTCAGCTAGCCCAGTCACTTTTATGAGCAATATGCTTTACGCTTGCAGTATCCTTTACAAGACAAGGTTGCCTCTTGTGTTGGCATTCAACAAGACTGACGTGGCCCAACATCAGTTTGCTTTGGAGTGGATGGAGGATTTTGAGGCATTTCAAGCAGCAGTGAGTACGGATAGTTCATACAGTTCAACTTTAGCTCAGAGCCTCTCCCTTGTGTTGGATGAATTCTATAAGAACTTGCGGTCTGTTGGAGTGTCTGCGGTTTCTGGTGCTGGAATGAAGGATTTCTTTAAGGCCATTGAAGCAAGTGTTGAGGAGTACATGGGCAACTATAAGGCTGATCTGGAAAAGAGACGTGCAGAGAAGGAACGTTTGGAGGAGGAACACAGAAAGGAGAACATGGAGAAGTTGAGGAAAGATATGGAGAAATCCGGGGGAGAGACTGTGATATTGAGCACTGGTTTGAAGGACAAAGATGAGAGGGGCAAAGCCATGATGGATGAGGACGAGGAAGAAGTTGAAGAAGAAGAGGAAGATGAGATGTTTACTGAAGATGAGGATGCTTTAGATGAAGATGAAGATGAAGAGGTTGGCAGGTTCACCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005874 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP_bind_1

Protein Analysis

410

Amino Acids

45.93

Weight (kDa)

4.56

Isoelectric Point (pI)

48.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21800 AT4G21800
fragaria_vesca	FvH4_4g12660 FvH4_4g12660
malus_domestica	MD12G1007400.v1.1 MD13G1150100.v1.1 MD14G1004700.v1.1 MD16G1150500.v1.1
prunus_persica	Prupe.1G114400_v2.0.a1
pyrus_communis	pycom12g00540 pycom14g00320 pycom16g12890
rosa_chinensis	RchiOBHm_Chr4g0411531
rosa_laevigata	RLG00000008348
rosa_multiflora	Rmu_sc0001868.1_g000001
rosa_roxburghii	Rroxscaffold_5G00356100
rosa_rugosa	Rorug04G0108000
rosa_samantha	Rh4AG168800 Rh4BG165400 Rh4CG180200 Rh4DG163100
rosa_wichuraiana	Rw0G020790 Rw4G014020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	212
Acc36I	ACCTGC	1 cut(s)	1206
AciI	CCGC	4 cut(s)	230, 546, 862, 881
AclI	AACGTT	2 cut(s)	93, 991
AcsI	RAATTY	2 cut(s)	417, 845
AcuI	CTGAAG	2 cut(s)	99, 1191
AcvI	CACGTG	1 cut(s)	278
AfaI	GTAC	3 cut(s)	291, 790, 941
AfiI	CCNNNNNNNGG	3 cut(s)	340, 413, 838
AflIII	ACRYGT	1 cut(s)	275
AgsI	TTSAA	9 cut(s)	193, 397, 582, 712, 776, 810, 923, 1087, 1142
AjiI	CACGTC	2 cut(s)	724, 977
AjnI	CCWGG	1 cut(s)	517
AjuI	GAANNNNNNNTTGG	2 cut(s)	977, 1009
AleI	CACNNNNGTG	1 cut(s)	276
AluBI	AGCT	4 cut(s)	189, 320, 629, 818
AluI	AGCT	4 cut(s)	189, 320, 629, 818
Alw21I	GWGCWC	1 cut(s)	1079
Alw26I	GTCTC	3 cut(s)	469, 967, 1055
AoxI	GGCC	2 cut(s)	726, 915
ApeKI	GCWGC	1 cut(s)	779
ApoI	RAATTY	2 cut(s)	417, 845
Asp700I	GAANNNNTTC	2 cut(s)	392, 905
AspS9I	GGNCC	4 cut(s)	183, 404, 543, 727
AsuC2I	CCSGG	1 cut(s)	1054
AsuHPI	GGTGA	2 cut(s)	394, 1213
AsuNHI	GCTAGC	1 cut(s)	629
AvaII	GGWCC	3 cut(s)	183, 404, 543
BbrPI	CACGTG	1 cut(s)	278
Bbv12I	GWGCWC	1 cut(s)	1079
BbvI	GCAGC	1 cut(s)	791
BccI	CCATC	2 cut(s)	748, 1111
BciT130I	CCWGG	1 cut(s)	519
BciVI	GTATCC	4 cut(s)	57, 355, 505, 683
BcnI	CCSGG	1 cut(s)	1054
BcoDI	GTCTC	3 cut(s)	469, 967, 1055
BfaI	CTAG	1 cut(s)	630
BfuAI	ACCTGC	1 cut(s)	1206
BfuI	GTATCC	4 cut(s)	57, 355, 505, 683
BisI	GCNGC	1 cut(s)	780
BlsI	GCNGC	1 cut(s)	781
Bme1390I	CCNGG	2 cut(s)	519, 1054
Bme18I	GGWCC	3 cut(s)	183, 404, 543
BmgBI	CACGTC	2 cut(s)	724, 977
BmgT120I	GGNCC	4 cut(s)	183, 404, 543, 727
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	2 cut(s)	519, 1054
BmrI	ACTGGG	1 cut(s)	629
BmsI	GCATC	1 cut(s)	1171
BmtI	GCTAGC	1 cut(s)	633
BmuI	ACTGGG	1 cut(s)	629
BplI	GAGNNNNNCTC	2 cut(s)	449, 481
BpuMI	CCSGG	1 cut(s)	1054
BsaAI	YACGTR	3 cut(s)	278, 293, 607
BsaJI	CCNNGG	2 cut(s)	69, 1053
BsaXI	ACNNNNNCTCC	2 cut(s)	1050, 1080
Bsc4I	CCNNNNNNNGG	3 cut(s)	340, 413, 838
Bse1I	ACTGG	3 cut(s)	203, 635, 1084
BseBI	CCWGG	1 cut(s)	519
BseDI	CCNNGG	2 cut(s)	69, 1053
BseGI	GGATG	4 cut(s)	759, 847, 1126, 1186
BseLI	CCNNNNNNNGG	3 cut(s)	340, 413, 838
BseMII	CTCAG	2 cut(s)	480, 833
BseNI	ACTGG	3 cut(s)	203, 635, 1084
BseRI	GAGGAG	3 cut(s)	173, 950, 1013
BseXI	GCAGC	1 cut(s)	791
BseYI	CCCAGC	1 cut(s)	316
BsgI	GTGCAG	1 cut(s)	999
BshFI	GGCC	2 cut(s)	728, 917
BsiHKAI	GWGCWC	1 cut(s)	1079
BsiSI	CCGG	1 cut(s)	1053
BsiWI	CGTACG	1 cut(s)	289
BslI	CCNNNNNNNGG	3 cut(s)	340, 413, 838
BsmAI	GTCTC	3 cut(s)	469, 967, 1055
BsmBI	CGTCTC	1 cut(s)	967
BsmI	GAATGC	1 cut(s)	707
BsnI	GGCC	2 cut(s)	728, 917
Bsp1286I	GDGCHC	1 cut(s)	1079
Bsp143I	GATC	3 cut(s)	487, 597, 961
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	4 cut(s)	230, 546, 862, 881
BspANI	GGCC	2 cut(s)	728, 917
BspCNI	CTCAG	2 cut(s)	479, 832
BspLI	GGNNCC	1 cut(s)	184
BspMI	ACCTGC	1 cut(s)	1206
BspOI	GCTAGC	1 cut(s)	633
BspQI	GCTCTTC	1 cut(s)	91
BsrI	ACTGG	3 cut(s)	203, 635, 1084
BssECI	CCNNGG	2 cut(s)	69, 1053
BssMI	GATC	3 cut(s)	487, 597, 961
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	519
Bst4CI	ACNGT	5 cut(s)	367, 393, 595, 806, 1066
Bst6I	CTCTTC	3 cut(s)	91, 1143, 1200
BstBAI	YACGTR	3 cut(s)	278, 293, 607
BstC8I	GCNNGC	4 cut(s)	177, 483, 631, 667
BstDEI	CTNAG	2 cut(s)	466, 819
BstDSI	CCRYGG	1 cut(s)	69
BstF5I	GGATG	4 cut(s)	759, 847, 1126, 1186
BstKTI	GATC	3 cut(s)	490, 600, 964
BstMAI	GTCTC	3 cut(s)	469, 967, 1055
BstMBI	GATC	3 cut(s)	487, 597, 961
BstMWI	GCNNNNNNNGC	3 cut(s)	554, 776, 923
BstNI	CCWGG	1 cut(s)	519
BstSCI	CCNGG	2 cut(s)	517, 1052
BstV1I	GCAGC	1 cut(s)	791
BsuI	GTATCC	4 cut(s)	57, 355, 505, 683
BsuRI	GGCC	2 cut(s)	728, 917
BtgI	CCRYGG	1 cut(s)	69
BtrI	CACGTC	2 cut(s)	724, 977
BtsCI	GGATG	4 cut(s)	759, 847, 1126, 1186
BtsI	GCAGTG	1 cut(s)	789
BtsIMutI	CAGTG	2 cut(s)	789, 1077
BveI	ACCTGC	1 cut(s)	1206
Cac8I	GCNNGC	4 cut(s)	177, 483, 631, 667
Cfr13I	GGNCC	4 cut(s)	183, 404, 543, 727
Csp6I	GTAC	3 cut(s)	290, 789, 940
CspCI	CAANNNNNGTGG	2 cut(s)	274, 309
CviAII	CATG	6 cut(s)	70, 226, 540, 943, 1021, 1114
CviQI	GTAC	3 cut(s)	290, 789, 940
DdeI	CTNAG	2 cut(s)	466, 819
DpnI	GATC	3 cut(s)	489, 599, 963
DpnII	GATC	3 cut(s)	487, 597, 961
Eam1104I	CTCTTC	3 cut(s)	91, 1143, 1200
EarI	CTCTTC	3 cut(s)	91, 1143, 1200
Eco130I	CCWWGG	1 cut(s)	69
Eco47I	GGWCC	3 cut(s)	183, 404, 543
Eco57I	CTGAAG	2 cut(s)	99, 1191
Eco72I	CACGTG	1 cut(s)	278
EcoRI	GAATTC	1 cut(s)	845
EcoRII	CCWGG	1 cut(s)	517
EcoT14I	CCWWGG	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	69
Esp3I	CGTCTC	1 cut(s)	967
FaeI	CATG	6 cut(s)	73, 229, 543, 946, 1024, 1117
FalI	AAGNNNNNCTT	2 cut(s)	893, 925
FatI	CATG	6 cut(s)	69, 225, 539, 942, 1020, 1113
FauI	CCCGC	1 cut(s)	223
Fnu4HI	GCNGC	1 cut(s)	780
FokI	GGATG	4 cut(s)	766, 854, 1133, 1193
Fsp4HI	GCNGC	1 cut(s)	780
FspBI	CTAG	1 cut(s)	630
GluI	GCNGC	1 cut(s)	780
GsaI	CCCAGC	1 cut(s)	320
HaeIII	GGCC	2 cut(s)	728, 917
HapII	CCGG	1 cut(s)	1053
Hin1II	CATG	6 cut(s)	73, 229, 543, 946, 1024, 1117
HinfI	GANTC	6 cut(s)	11, 74, 161, 281, 307, 328
HpaII	CCGG	1 cut(s)	1053
HphI	GGTGA	2 cut(s)	394, 1213
Hpy166II	GTNNAC	2 cut(s)	1167, 1221
Hpy188I	TCNGA	5 cut(s)	16, 79, 99, 525, 822
Hpy188III	TCNNGA	3 cut(s)	193, 311, 965
Hpy8I	GTNNAC	2 cut(s)	1167, 1221
HpyAV	CCTTC	5 cut(s)	44, 74, 895, 979, 1081
HpyCH4III	ACNGT	5 cut(s)	367, 393, 595, 806, 1066
HpyCH4IV	ACGT	8 cut(s)	93, 277, 288, 292, 606, 723, 976, 991
HpyCH4V	TGCA	3 cut(s)	151, 669, 980
HpyF10VI	GCNNNNNNNGC	3 cut(s)	554, 776, 923
HpyF3I	CTNAG	2 cut(s)	466, 819
HpySE526I	ACGT	8 cut(s)	93, 277, 288, 292, 606, 723, 976, 991
Hsp92II	CATG	6 cut(s)	73, 229, 543, 946, 1024, 1117
Kzo9I	GATC	3 cut(s)	487, 597, 961
LguI	GCTCTTC	1 cut(s)	91
Lsp1109I	GCAGC	1 cut(s)	791
LweI	GCATC	1 cut(s)	1171
MaeI	CTAG	1 cut(s)	630
MaeII	ACGT	8 cut(s)	93, 277, 288, 292, 606, 723, 976, 991
MaeIII	GTNAC	1 cut(s)	637
MalI	GATC	3 cut(s)	489, 599, 963
MboI	GATC	3 cut(s)	487, 597, 961
MhlI	GDGCHC	1 cut(s)	1079
MluCI	AATT	3 cut(s)	213, 417, 845
MlyI	GAGTC	4 cut(s)	68, 170, 290, 322
MmeI	TCCRAC	3 cut(s)	309, 819, 850
MroXI	GAANNNNTTC	2 cut(s)	392, 905
MseI	TTAA	1 cut(s)	912
MslI	CAYNNNNRTG	2 cut(s)	276, 644
MspA1I	CMGCKG	1 cut(s)	320
MspI	CCGG	1 cut(s)	1053
MspR9I	CCNGG	2 cut(s)	519, 1054
Mva1269I	GAATGC	1 cut(s)	707
MvaI	CCWGG	1 cut(s)	519
MwoI	GCNNNNNNNGC	3 cut(s)	554, 776, 923
NciI	CCSGG	1 cut(s)	1054
NcoI	CCATGG	1 cut(s)	69
NdeII	GATC	3 cut(s)	487, 597, 961
NheI	GCTAGC	1 cut(s)	629
NlaIII	CATG	6 cut(s)	73, 229, 543, 946, 1024, 1117
NlaIV	GGNNCC	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	637
OliI	CACNNNNGTG	1 cut(s)	276
PciSI	GCTCTTC	1 cut(s)	91
PctI	GAATGC	1 cut(s)	707
PdmI	GAANNNNTTC	2 cut(s)	392, 905
PfeI	GAWTC	2 cut(s)	11, 307
Pfl23II	CGTACG	1 cut(s)	289
PkrI	GCNGC	1 cut(s)	781
PleI	GAGTC	4 cut(s)	68, 169, 289, 322
PmaCI	CACGTG	1 cut(s)	278
PmlI	CACGTG	1 cut(s)	278
PpsI	GAGTC	4 cut(s)	68, 169, 289, 322
Ppu21I	YACGTR	3 cut(s)	278, 293, 607
PsiI	TTATAA	1 cut(s)	212
Psp1406I	AACGTT	2 cut(s)	93, 991
Psp6I	CCWGG	1 cut(s)	517
PspCI	CACGTG	1 cut(s)	278
PspFI	CCCAGC	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	517
PspLI	CGTACG	1 cut(s)	289
PspN4I	GGNNCC	1 cut(s)	184
PspPI	GGNCC	4 cut(s)	183, 404, 543, 727
PsrI	GAACNNNNNNTAC	2 cut(s)	781, 813
PvuII	CAGCTG	1 cut(s)	320
RsaI	GTAC	3 cut(s)	291, 790, 941
RsaNI	GTAC	3 cut(s)	290, 789, 940
RseI	CAYNNNNRTG	2 cut(s)	276, 644
SapI	GCTCTTC	1 cut(s)	91
SaqAI	TTAA	1 cut(s)	912
SatI	GCNGC	1 cut(s)	780
Sau3AI	GATC	3 cut(s)	487, 597, 961
Sau96I	GGNCC	4 cut(s)	183, 404, 543, 727
SchI	GAGTC	4 cut(s)	68, 170, 290, 322
ScrFI	CCNGG	2 cut(s)	519, 1054
SduI	GDGCHC	1 cut(s)	1079
SfaNI	GCATC	1 cut(s)	1171
SinI	GGWCC	3 cut(s)	183, 404, 543
SmiMI	CAYNNNNRTG	2 cut(s)	276, 644
Sse9I	AATT	3 cut(s)	213, 417, 845
SsiI	CCGC	4 cut(s)	230, 546, 862, 881
SspMI	CTAG	1 cut(s)	630
StyD4I	CCNGG	2 cut(s)	517, 1052
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	5 cut(s)	367, 393, 595, 806, 1066
TaiI	ACGT	8 cut(s)	96, 280, 291, 295, 609, 726, 979, 994
TaqI	TCGA	1 cut(s)	351
TasI	AATT	3 cut(s)	213, 417, 845
TatI	WGTACW	1 cut(s)	939
TfiI	GAWTC	2 cut(s)	11, 307
Tru1I	TTAA	1 cut(s)	912
Tru9I	TTAA	1 cut(s)	912
TscAI	CASTG	2 cut(s)	789, 1084
TseFI	GTSAC	1 cut(s)	637
TseI	GCWGC	1 cut(s)	779
Tsp45I	GTSAC	1 cut(s)	637
TspGWI	ACGGA	1 cut(s)	806
TspRI	CASTG	2 cut(s)	789, 1084
VpaK11BI	GGWCC	3 cut(s)	183, 404, 543
XapI	RAATTY	2 cut(s)	417, 845
XmnI	GAANNNNTTC	2 cut(s)	392, 905
XspI	CTAG	1 cut(s)	630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.