AT4G22790

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
11975031 .. 11976849
1819 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G22790.1

Sequence Viewer

Length: 1476 bp
ATGTCAGAAACATCAAAGTCAGAGTCTTTAGATCCAGAAGTCTCTGAAGGGCTTTGTTCAAAGACCTTGATGCAGAGCATTGTTCATGAGCTGAAGCTGCAGATGAGAATTGGTTTGCCATTGGTGGTTATGAATTTGTTGTGGTTCGGTAAGATGACCACCACATCTGTGTTTCTTGGCCGTCAAGGTGAGCTTAACCTAGCCGGAGGTTCATTAGGGTTTTCCTTTGCAAACGTTACTGGCTTTTCTGTTTTGTATGGTATTTCTGCTGCAATGGAGCCTATTTGTGGCCAAGCTTTCGGAGCCAAGAACTTTAAGCTTCTTCATAAAACCCTTTTTATGGCAGTGCTCTTGCTACTCTTGATTTCGGTACCAATTTCTTTCTTGTGGCTCAATGTTCACAAGATCCTTACTGGTTTTGGTCAAAGAGAAGATATTTCCTTCATAGCCAAGAAATATCTTCTCTACCTTCTTCCAGAGTTGCCAATCCTCTCTTTTCTTTGTCCACTTAAGGCTTATTTAAGCTCACAAGGTGTTACTCTTCCCATCATGTTCACAACAGCTGCAGCCACTTCTCTTCATATCCCCATCAACATAGTCCTCTCTAAAGCAAGAGGAATTGAAGGAGTTGCAATGGCGGTTTGGATAACTGATTTTATTGTTGTGATTCTTCTAACTGGATATGTGATAGTCGTAGAGCGAATGAAAGAGAACAAATGGAAACAAGGTGGCTGGTTAAACCAAAGTGCTCAAGACTGGCTCACACTGATCAAGCTTAGTGGACCATGTTGTCTCACCGTGTGCCTTGAATGGTGGTGCTACGAGATCTTGGTCCTTTTAACCGGGAGGTTACCAAACCCGGTGCAAGCTGTATCAATCTTGATTATAGTTTTCAACTTCGACTACTTGCTTTACGCGGTGATGCTCTCTTTAGGCACGTGTGTGGCAACAAGAGTGTCCAATGAGCTCGGCGCAAATAATCCTAAGGGAGCTTATAGAGCAGCTTACACTACACTCATTGTGGGTATTATTTCAGGCTGCATTGGAGCATTAGTGATGATAGCATTTAGAGGTTTTTGGGGGTCTTTGTATACTCACCATGACCAACTCATCTTAAACGGTGTGAAGAAGATGATGCTGATAATGGCGGTTATCGAAGTTGTAAACTTCCCATTAATGGTTTGTGGAGAGATAGTCCGCGGAACAGCGAAACCGTCTCTTGGAATGTATGCAAATCTTAGTGGATTCTATCTATTGGCTTTGCCTTTAGGGGCAACTTTGGCGTTCAAGGCTAAACAAGGGCTTCAAGGGTTCTTGATCGGGTTATTTGTTGGTATATCTCTCTGTCTCTCGATATTGCTCATCTTTATTGCGAGGATAGATTGGGAGAAAGAAGCTGGGAAAGCACAGATTCTGACATGTAACACAGAGGACGAACAAACTTCACAAGGTTCAGGACAAGATAGCCACTCATAG

Protein Analysis

491

Amino Acids

53.7

Weight (kDa)

8.5

Isoelectric Point (pI)

31.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 40 - 199 1.4e-37 MatE
MatE PF01554 262 - 424 3.3e-36 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 789
Acc65I GGTACC 1 cut(s) 370
AccB1I GGYRCC 1 cut(s) 370
AccI GTMKAC 1 cut(s) 1091
AccII CGCG 2 cut(s) 917, 1200
AciI CCGC 5 cut(s) 638, 917, 1148, 1198, 1200
AclI AACGTT 1 cut(s) 234
AclWI GGATC 2 cut(s) 26, 400
AcoI YGGCCR 2 cut(s) 178, 289
AcsI RAATTY 1 cut(s) 133
AcuI CTGAAG 2 cut(s) 66, 113
AcvI CACGTG 1 cut(s) 939
AdeI CACNNNGTG 2 cut(s) 533, 801
AfaI GTAC 1 cut(s) 372
AfiI CCNNNNNNNGG 4 cut(s) 287, 340, 1177, 1220
AflII CTTAAG 1 cut(s) 509
AflIII ACRYGT 2 cut(s) 938, 1418
AgsI TTSAA 6 cut(s) 60, 623, 809, 895, 1288, 1307
AleI CACNNNNGTG 2 cut(s) 167, 941
Alw21I GWGCWC 3 cut(s) 351, 751, 969
Alw26I GTCTC 4 cut(s) 46, 797, 1221, 1352
AlwI GGATC 2 cut(s) 26, 400
AlwNI CAGNNNCTG 1 cut(s) 1414
AoxI GGCC 2 cut(s) 178, 289
ApeKI GCWGC 6 cut(s) 97, 269, 563, 566, 1001, 1038
ApoI RAATTY 1 cut(s) 133
ArsI GACNNNNNNTTYG 2 cut(s) 8, 40
AseI ATTAAT 1 cut(s) 1175
Asp718I GGTACC 1 cut(s) 370
AspLEI GCGC 1 cut(s) 974
AspS9I GGNCC 2 cut(s) 782, 832
AsuC2I CCSGG 2 cut(s) 844, 860
AsuHPI GGTGA 4 cut(s) 200, 787, 931, 1088
AvaII GGWCC 2 cut(s) 782, 832
AxyI CCTNAGG 1 cut(s) 984
BalI TGGCCA 1 cut(s) 291
BanI GGYRCC 1 cut(s) 370
BanII GRGCYC 1 cut(s) 969
BbrPI CACGTG 1 cut(s) 939
Bbv12I GWGCWC 3 cut(s) 351, 751, 969
BbvI GCAGC 6 cut(s) 84, 256, 550, 578, 1013, 1025
BccI CCATC 2 cut(s) 554, 596
BceAI ACGGC 1 cut(s) 165
BclI TGATCA 1 cut(s) 768
BcnI CCSGG 2 cut(s) 844, 860
BcoDI GTCTC 4 cut(s) 46, 797, 1221, 1352
BfaI CTAG 1 cut(s) 200
BfmI CTRYAG 2 cut(s) 98, 564
BfrI CTTAAG 1 cut(s) 509
BglII AGATCT 1 cut(s) 825
BisI GCNGC 6 cut(s) 98, 270, 564, 567, 1002, 1039
BlsI GCNGC 6 cut(s) 99, 271, 565, 568, 1003, 1040
Bme1390I CCNGG 2 cut(s) 844, 860
Bme18I GGWCC 2 cut(s) 782, 832
BmgT120I GGNCC 2 cut(s) 782, 832
BmiI GGNNCC 3 cut(s) 279, 304, 372
BmrFI CCNGG 2 cut(s) 844, 860
BmsI GCATC 3 cut(s) 60, 912, 1125
BpuEI CTTGAG 1 cut(s) 735
BpuMI CCSGG 2 cut(s) 844, 860
BsaAI YACGTR 1 cut(s) 939
BsaJI CCNNGG 1 cut(s) 1198
BsaXI ACNNNNNCTCC 4 cut(s) 1038, 1068, 1179, 1209
Bsc4I CCNNNNNNNGG 4 cut(s) 287, 340, 1177, 1220
Bse1I ACTGG 4 cut(s) 244, 418, 682, 761
Bse21I CCTNAGG 1 cut(s) 984
Bse3DI GCAATG 2 cut(s) 279, 639
BseDI CCNNGG 1 cut(s) 1198
BseLI CCNNNNNNNGG 4 cut(s) 287, 340, 1177, 1220
BseMI GCAATG 2 cut(s) 279, 639
BseNI ACTGG 4 cut(s) 244, 418, 682, 761
BseXI GCAGC 6 cut(s) 84, 256, 550, 578, 1013, 1025
BseYI CCCAGC 1 cut(s) 1397
Bsh1236I CGCG 2 cut(s) 917, 1200
BshFI GGCC 2 cut(s) 180, 291
BshNI GGYRCC 1 cut(s) 370
BsiHKAI GWGCWC 3 cut(s) 351, 751, 969
BsiSI CCGG 3 cut(s) 204, 843, 860
BslI CCNNNNNNNGG 4 cut(s) 287, 340, 1177, 1220
BsmAI GTCTC 4 cut(s) 46, 797, 1221, 1352
BsmBI CGTCTC 1 cut(s) 1221
BsnI GGCC 2 cut(s) 180, 291
Bsp1286I GDGCHC 3 cut(s) 351, 751, 969
Bsp143I GATC 5 cut(s) 31, 405, 768, 825, 1317
BspACI CCGC 5 cut(s) 638, 917, 1148, 1198, 1200
BspANI GGCC 2 cut(s) 180, 291
BspFNI CGCG 2 cut(s) 917, 1200
BspHI TCATGA 1 cut(s) 85
BspLI GGNNCC 3 cut(s) 279, 304, 372
BspMAI CTGCAG 2 cut(s) 102, 568
BspPI GGATC 2 cut(s) 26, 400
BspT107I GGYRCC 1 cut(s) 370
BspTI CTTAAG 1 cut(s) 509
BsrDI GCAATG 2 cut(s) 279, 639
BsrI ACTGG 4 cut(s) 244, 418, 682, 761
BssECI CCNNGG 1 cut(s) 1198
BssMI GATC 5 cut(s) 31, 405, 768, 825, 1317
BssNAI GTATAC 1 cut(s) 1092
Bst1107I GTATAC 1 cut(s) 1092
Bst4CI ACNGT 3 cut(s) 799, 1121, 1215
Bst6I CTCTTC 2 cut(s) 546, 582
BstAFI CTTAAG 1 cut(s) 509
BstBAI YACGTR 1 cut(s) 939
BstC8I GCNNGC 1 cut(s) 867
BstDEI CTNAG 3 cut(s) 776, 984, 1238
BstDSI CCRYGG 1 cut(s) 1198
BstEII GGTNACC 1 cut(s) 849
BstFNI CGCG 2 cut(s) 917, 1200
BstHHI GCGC 1 cut(s) 974
BstKTI GATC 5 cut(s) 34, 408, 771, 828, 1320
BstMAI GTCTC 4 cut(s) 46, 797, 1221, 1352
BstMBI GATC 5 cut(s) 31, 405, 768, 825, 1317
BstMWI GCNNNNNNNGC 6 cut(s) 97, 302, 998, 1280, 1289, 1403
BstNSI RCATGY 1 cut(s) 1422
BstPI GGTNACC 1 cut(s) 849
BstSCI CCNGG 2 cut(s) 842, 858
BstSFI CTRYAG 2 cut(s) 98, 564
BstUI CGCG 2 cut(s) 917, 1200
BstV1I GCAGC 6 cut(s) 84, 256, 550, 578, 1013, 1025
BstX2I RGATCY 3 cut(s) 31, 405, 825
BstYI RGATCY 3 cut(s) 31, 405, 825
BstZ17I GTATAC 1 cut(s) 1092
Bsu36I CCTNAGG 1 cut(s) 984
BsuRI GGCC 2 cut(s) 180, 291
BtgI CCRYGG 1 cut(s) 1198
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 2 cut(s) 351, 764
Cac8I GCNNGC 1 cut(s) 867
CaiI CAGNNNCTG 1 cut(s) 1414
CciI TCATGA 1 cut(s) 85
CfoI GCGC 1 cut(s) 974
Cfr13I GGNCC 2 cut(s) 782, 832
Cfr42I CCGCGG 1 cut(s) 1201
Csp6I GTAC 1 cut(s) 371
CspCI CAANNNNNGTGG 2 cut(s) 760, 795
CviAII CATG 5 cut(s) 86, 550, 786, 1100, 1419
CviQI GTAC 1 cut(s) 371
DdeI CTNAG 3 cut(s) 776, 984, 1238
DpnI GATC 5 cut(s) 33, 407, 770, 827, 1319
DpnII GATC 5 cut(s) 31, 405, 768, 825, 1317
DraIII CACNNNGTG 2 cut(s) 533, 801
DrdI GACNNNNNNGTC 1 cut(s) 789
DseDI GACNNNNNNGTC 1 cut(s) 789
EaeI YGGCCR 2 cut(s) 178, 289
Eam1104I CTCTTC 2 cut(s) 546, 582
EarI CTCTTC 2 cut(s) 546, 582
Ecl136II GAGCTC 1 cut(s) 967
Eco24I GRGCYC 1 cut(s) 969
Eco47I GGWCC 2 cut(s) 782, 832
Eco53kI GAGCTC 1 cut(s) 967
Eco57I CTGAAG 2 cut(s) 66, 113
Eco72I CACGTG 1 cut(s) 939
Eco81I CCTNAGG 1 cut(s) 984
Eco91I GGTNACC 1 cut(s) 849
EcoICRI GAGCTC 1 cut(s) 967
EcoO65I GGTNACC 1 cut(s) 849
EcoT38I GRGCYC 1 cut(s) 969
Esp3I CGTCTC 1 cut(s) 1221
FaeI CATG 5 cut(s) 89, 553, 789, 1103, 1422
FalI AAGNNNNNCTT 2 cut(s) 177, 209
FatI CATG 5 cut(s) 85, 549, 785, 1099, 1418
FbaI TGATCA 1 cut(s) 768
FblI GTMKAC 1 cut(s) 1091
Fnu4HI GCNGC 6 cut(s) 98, 270, 564, 567, 1002, 1039
FriOI GRGCYC 1 cut(s) 969
Fsp4HI GCNGC 6 cut(s) 98, 270, 564, 567, 1002, 1039
FspBI CTAG 1 cut(s) 200
GlaI GCGC 1 cut(s) 973
GluI GCNGC 6 cut(s) 98, 270, 564, 567, 1002, 1039
GsaI CCCAGC 1 cut(s) 1401
HaeIII GGCC 2 cut(s) 180, 291
HapII CCGG 3 cut(s) 204, 843, 860
HhaI GCGC 1 cut(s) 974
Hin1II CATG 5 cut(s) 89, 553, 789, 1103, 1422
Hin6I GCGC 1 cut(s) 972
HinP1I GCGC 1 cut(s) 972
HindIII AAGCTT 3 cut(s) 294, 317, 773
HinfI GANTC 4 cut(s) 23, 667, 1245, 1411
HpaII CCGG 3 cut(s) 204, 843, 860
HphI GGTGA 4 cut(s) 200, 787, 931, 1088
Hpy166II GTNNAC 6 cut(s) 400, 506, 555, 782, 1092, 1165
Hpy188I TCNGA 5 cut(s) 7, 22, 46, 302, 1416
Hpy188III TCNNGA 9 cut(s) 35, 86, 361, 476, 752, 880, 1315, 1351, 1455
Hpy8I GTNNAC 6 cut(s) 400, 506, 555, 782, 1092, 1165
HpyAV CCTTC 4 cut(s) 41, 451, 479, 617
HpyCH4III ACNGT 3 cut(s) 799, 1121, 1215
HpyCH4IV ACGT 2 cut(s) 234, 938
HpyCH4V TGCA 9 cut(s) 73, 100, 230, 272, 566, 632, 865, 1041, 1232
HpyF10VI GCNNNNNNNGC 6 cut(s) 97, 302, 998, 1280, 1289, 1403
HpyF3I CTNAG 3 cut(s) 776, 984, 1238
HpySE526I ACGT 2 cut(s) 234, 938
Hsp92II CATG 5 cut(s) 89, 553, 789, 1103, 1422
HspAI GCGC 1 cut(s) 972
KpnI GGTACC 1 cut(s) 374
Ksp22I TGATCA 1 cut(s) 768
KspI CCGCGG 1 cut(s) 1201
Kzo9I GATC 5 cut(s) 31, 405, 768, 825, 1317
LmnI GCTCC 4 cut(s) 277, 302, 989, 1046
Lsp1109I GCAGC 6 cut(s) 84, 256, 550, 578, 1013, 1025
LweI GCATC 3 cut(s) 60, 912, 1125
MaeI CTAG 1 cut(s) 200
MaeII ACGT 2 cut(s) 234, 938
MaeIII GTNAC 4 cut(s) 235, 535, 849, 1421
MalI GATC 5 cut(s) 33, 407, 770, 827, 1319
MboI GATC 5 cut(s) 31, 405, 768, 825, 1317
MboII GAAGA 9 cut(s) 314, 443, 452, 464, 533, 569, 662, 1138, 1141
MflI RGATCY 3 cut(s) 31, 405, 825
MhlI GDGCHC 3 cut(s) 351, 751, 969
MlsI TGGCCA 1 cut(s) 291
MluCI AATT 4 cut(s) 108, 133, 375, 618
MluNI TGGCCA 1 cut(s) 291
MlyI GAGTC 1 cut(s) 32
MnlI CCTC 8 cut(s) 200, 500, 608, 611, 840, 1064, 1368, 1423
Mox20I TGGCCA 1 cut(s) 291
MscI TGGCCA 1 cut(s) 291
MseI TTAA 8 cut(s) 195, 315, 510, 521, 737, 839, 1115, 1175
MslI CAYNNNNRTG 2 cut(s) 167, 941
Msp20I TGGCCA 1 cut(s) 291
MspA1I CMGCKG 2 cut(s) 563, 1200
MspCI CTTAAG 1 cut(s) 509
MspI CCGG 3 cut(s) 204, 843, 860
MspR9I CCNGG 2 cut(s) 844, 860
MvnI CGCG 2 cut(s) 917, 1200
MwoI GCNNNNNNNGC 6 cut(s) 97, 302, 998, 1280, 1289, 1403
NciI CCSGG 2 cut(s) 844, 860
NdeII GATC 5 cut(s) 31, 405, 768, 825, 1317
NlaIII CATG 5 cut(s) 89, 553, 789, 1103, 1422
NlaIV GGNNCC 3 cut(s) 279, 304, 372
NmeAIII GCCGAG 1 cut(s) 948
NspI RCATGY 1 cut(s) 1422
OliI CACNNNNGTG 2 cut(s) 167, 941
PagI TCATGA 1 cut(s) 85
PciI ACATGT 1 cut(s) 1418
PfeI GAWTC 3 cut(s) 667, 1245, 1411
PkrI GCNGC 6 cut(s) 99, 271, 565, 568, 1003, 1040
PleI GAGTC 1 cut(s) 31
PmaCI CACGTG 1 cut(s) 939
PmlI CACGTG 1 cut(s) 939
PpsI GAGTC 1 cut(s) 31
Ppu21I YACGTR 1 cut(s) 939
PscI ACATGT 1 cut(s) 1418
PshBI ATTAAT 1 cut(s) 1175
Psp124BI GAGCTC 1 cut(s) 969
Psp1406I AACGTT 1 cut(s) 234
PspCI CACGTG 1 cut(s) 939
PspEI GGTNACC 1 cut(s) 849
PspFI CCCAGC 1 cut(s) 1397
PspN4I GGNNCC 3 cut(s) 279, 304, 372
PspPI GGNCC 2 cut(s) 782, 832
PstI CTGCAG 2 cut(s) 102, 568
PstNI CAGNNNCTG 1 cut(s) 1414
PsuI RGATCY 3 cut(s) 31, 405, 825
PvuII CAGCTG 1 cut(s) 563
RsaI GTAC 1 cut(s) 372
RsaNI GTAC 1 cut(s) 371
RseI CAYNNNNRTG 2 cut(s) 167, 941
SacI GAGCTC 1 cut(s) 969
SacII CCGCGG 1 cut(s) 1201
SaqAI TTAA 8 cut(s) 195, 315, 510, 521, 737, 839, 1115, 1175
SatI GCNGC 6 cut(s) 98, 270, 564, 567, 1002, 1039
Sau3AI GATC 5 cut(s) 31, 405, 768, 825, 1317
Sau96I GGNCC 2 cut(s) 782, 832
SchI GAGTC 1 cut(s) 32
ScrFI CCNGG 2 cut(s) 844, 860
SduI GDGCHC 3 cut(s) 351, 751, 969
SfaNI GCATC 3 cut(s) 60, 912, 1125
SfcI CTRYAG 2 cut(s) 98, 564
Sfr303I CCGCGG 1 cut(s) 1201
SgrBI CCGCGG 1 cut(s) 1201
SinI GGWCC 2 cut(s) 782, 832
SmiMI CAYNNNNRTG 2 cut(s) 167, 941
SmlI CTYRAG 2 cut(s) 509, 750
SmoI CTYRAG 2 cut(s) 509, 750
Sse9I AATT 4 cut(s) 108, 133, 375, 618
SsiI CCGC 5 cut(s) 638, 917, 1148, 1198, 1200
SspMI CTAG 1 cut(s) 200
SstI GAGCTC 1 cut(s) 969
StyD4I CCNGG 2 cut(s) 842, 858
TaaI ACNGT 3 cut(s) 799, 1121, 1215
TaiI ACGT 2 cut(s) 237, 941
TaqI TCGA 3 cut(s) 900, 1155, 1352
TasI AATT 4 cut(s) 108, 133, 375, 618
TfiI GAWTC 3 cut(s) 667, 1245, 1411
Tru1I TTAA 8 cut(s) 195, 315, 510, 521, 737, 839, 1115, 1175
Tru9I TTAA 8 cut(s) 195, 315, 510, 521, 737, 839, 1115, 1175
TscAI CASTG 2 cut(s) 351, 771
TseI GCWGC 6 cut(s) 97, 269, 563, 566, 1001, 1038
TspDTI ATGAA 7 cut(s) 74, 146, 201, 314, 433, 569, 719
TspRI CASTG 2 cut(s) 351, 771
Vha464I CTTAAG 1 cut(s) 509
VpaK11BI GGWCC 2 cut(s) 782, 832
VspI ATTAAT 1 cut(s) 1175
XapI RAATTY 1 cut(s) 133
XceI RCATGY 1 cut(s) 1422
XmiI GTMKAC 1 cut(s) 1091
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.