Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0007089

Physical Location & Seq

Genomic Coordinates Reverse (-)

9516283 .. 9517806

Gene Structure 1524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G082100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1524 bp

ATGTCTGCAACATCAAATTTGGAAGAGGACCCAAGAGAGAGAGCCTCTCTGCCACCTTCATCCCTACCTCTCACTCAAAAATGGCCAGCCAACTTTTTCAAGGTCATGCTTTTAGAGCTGAAAATACAAAGAGGGATAGCTCTTCCTTTGGTGGCAATGAATTTGACATGGTTTGCCAAGATAGCAATCACAACAGCTTTTCTTGGCAGGCTCGGAGAGCTTCAATTGGCCGGTGGCACGCTTGGTTTCACCTTTGCTAATGTCACTGGCTTCTCTGTCTTAAATGGGCTCTGTGGTGCCATGGAACCTATATGTGGTCAAGCTTCTGGAGCTAAAAATATTAAGCTCCTTCACAAGACCCTTCTCATGACAACTTTCTTTTTACTGCTTGCAACACTTCCTATTTCTTTCTTGTGGCTCAATGTTGACAAAATCCTCATCCATTTTGGCCAACAAGAAGACATTTCAACAGTTGCAAAGAGCTACCTTTTGTATCTCCTGCCAGACTTGGTAATTACCTCATTTCTCTGTCCCCTCAAAGCCTACTTGAACTCCCAAAGCATCACACTACCTTCAATGTTCTGCTCGGCTTTGGCGCTTGCGCTTCACATACCGATCAACATCTTGCTTGCAAAATCCAAGGGTCTTGAGGGAATTGCAATGTCTGTGTGGATCACTGATCTCATGGTTGGGCTTCTACTTGCCTTGTATGTGTGCAGGATTGAAATTAATGCCAAGGAAGGGAGGTGGAAGGAAGGGGGGTGGCTTGATCAAGGTGTTGGGGATTGGATTAGGCTGCTCAAGCTTTGTGGACCTTGCTGCCTCACTACCTGCCTTGAATGGTGGTGCTATGAGATTTTGGTATTGCTAACAGGCAGGCTTGCCAATGCCAAGCAGGCAGTGGGAGTTTTAGCCATTGTATTAAACTTCGACTACTTGCTCTACTCAGTCATGCTTTCTCTGGCAACATGTGCCTCAACCCGTGTCTCGAATGAGCTTGGAGCAAACAGAGCAGGCCCTGCTTATCAGTCTGCATTTGTGTCTGTAGCAGTGAGTGTGGTCACAGGTTGCATGGGTGGCTTGGTGATGTTAGCAGCCAGGGGAAGTTGGGGGTCTTTGTTCAGCCATGATAAGGGAATTGTAGGAGGTGTGAAGAAGATGATGCTGCTCATGTCTTTAGTGGAGGTGGTAAATTTCCCATTAGCAGTTTGTGGAGGAATTGTCCGGGGAACCGCAAGGCCGTGGCTAGCCATGTATGCAAATCTTGGAGGGTTTTACCTCCTGGCCTTGCCCTTGGGAGTTGTTTTAGCATTCAAGGTTGCACTTGGGCTCAGTGGATTGTTGATAGGGTTCTTGATTGGGATGGTTGCTTGCTTGATTCTGGTTCTCATGTTTGTTGTAAGGATCAACTGGGATGAAGAAGCTTGCAAGGCACAAACACTTGCGTCAGTTGCATGTCAAGCACCAGAACTTAACAAAGATGGCAATCACAAAAGCACGGAGAGAGATGACGTTGAAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0008150 GO:0009987 GO:0010033 GO:0010035 GO:0010037 GO:0010119 GO:0015238 GO:0015691 GO:0015893 GO:0016020 GO:0022857 GO:0030001 GO:0035690 GO:0042221 GO:0042493 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051716 GO:0055085 GO:0065007 GO:0065008 GO:0070838 GO:0070887 GO:0071241 GO:0071244 GO:0071944 GO:0072347 GO:0072511 GO:1901700 GO:1901701 GO:1902456

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

508

Amino Acids

54.79

Weight (kDa)

8.4

Isoelectric Point (pI)

33.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22790
fragaria_vesca	FvH4_5g00900
malus_domestica	MD06G1067200.v1.1 MD06G1067400.v1.1 MD17G1137500.v1.1
prunus_persica	Prupe.5G082100_v2.0.a1
pyrus_communis	pycom06g06480
rosa_chinensis	RchiOBHm_Chr7g0200481 RchiOBHm_Chr7g0200881
rosa_laevigata	RLG00000003709 RLG00000003722
rosa_multiflora	Rmu_sc0000617.1_g000024 Rmu_sc0000708.1_g000018
rosa_roxburghii	Rroxscaffold_3G00255930
rosa_rugosa	Rorug07G0060600
rosa_samantha	Rh7AG186100 Rh7AG186200 Rh7BG189200 Rh7CG196300 Rh7CG197000 Rh7DG190200 Rh7DG192000 Rh7DG192100
rosa_wichuraiana	Rw7G016330 Rw7G016390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1517
Acc36I	ACCTGC	1 cut(s)	839
AccB1I	GGYRCC	1 cut(s)	296
AciI	CCGC	1 cut(s)	1233
AclWI	GGATC	2 cut(s)	680, 1412
AcoI	YGGCCR	3 cut(s)	83, 228, 448
AcsI	RAATTY	3 cut(s)	16, 160, 1192
AfiI	CCNNNNNNNGG	3 cut(s)	314, 741, 1132
AflIII	ACRYGT	1 cut(s)	968
AgsI	TTSAA	9 cut(s)	100, 224, 468, 550, 576, 725, 839, 1315, 1517
AjnI	CCWGG	2 cut(s)	1097, 1281
Alw26I	GTCTC	1 cut(s)	991
AlwI	GGATC	2 cut(s)	680, 1412
AlwNI	CAGNNNCTG	1 cut(s)	1019
AoxI	GGCC	6 cut(s)	83, 228, 448, 1015, 1238, 1284
ApeKI	GCWGC	4 cut(s)	796, 819, 1094, 1165
ApoI	RAATTY	3 cut(s)	16, 160, 1192
AseI	ATTAAT	1 cut(s)	729
AspLEI	GCGC	2 cut(s)	598, 604
AspS9I	GGNCC	3 cut(s)	28, 812, 1016
AsuC2I	CCSGG	1 cut(s)	1226
AsuHPI	GGTGA	2 cut(s)	241, 1096
AsuNHI	GCTAGC	1 cut(s)	1246
AvaII	GGWCC	2 cut(s)	28, 812
BalI	TGGCCA	2 cut(s)	85, 450
BanI	GGYRCC	1 cut(s)	296
BanII	GRGCYC	2 cut(s)	291, 1332
BbsI	GAAGAC	1 cut(s)	465
BbvI	GCAGC	4 cut(s)	783, 806, 1106, 1152
BccI	CCATC	2 cut(s)	1357, 1475
BceAI	ACGGC	1 cut(s)	1225
BciT130I	CCWGG	2 cut(s)	1099, 1283
BclI	TGATCA	1 cut(s)	769
BcnI	CCSGG	1 cut(s)	1226
BcoDI	GTCTC	1 cut(s)	991
BfaI	CTAG	1 cut(s)	1247
BfmI	CTRYAG	1 cut(s)	1044
BfoI	RGCGCY	1 cut(s)	599
BfuAI	ACCTGC	1 cut(s)	839
BglI	GCCNNNNNGGC	1 cut(s)	896
BisI	GCNGC	4 cut(s)	797, 820, 1095, 1166
BlsI	GCNGC	4 cut(s)	798, 821, 1096, 1167
Bme1390I	CCNGG	3 cut(s)	1099, 1226, 1283
Bme18I	GGWCC	2 cut(s)	28, 812
BmgT120I	GGNCC	3 cut(s)	28, 812, 1016
BmiI	GGNNCC	4 cut(s)	30, 298, 306, 1231
BmrFI	CCNGG	3 cut(s)	1099, 1226, 1283
BmrI	ACTGGG	1 cut(s)	1420
BmsI	GCATC	2 cut(s)	570, 1152
BmtI	GCTAGC	1 cut(s)	1250
BmuI	ACTGGG	1 cut(s)	1420
BpiI	GAAGAC	1 cut(s)	465
BplI	GAGNNNNNCTC	4 cut(s)	29, 61, 31, 63
BpmI	CTGGAG	1 cut(s)	348
BpuEI	CTTGAG	2 cut(s)	668, 785
BpuMI	CCSGG	1 cut(s)	1226
BsaBI	GATNNNNATC	3 cut(s)	185, 620, 1485
BsaJI	CCNNGG	7 cut(s)	300, 639, 735, 1098, 1225, 1241, 1293
BsaXI	ACNNNNNCTCC	4 cut(s)	536, 566, 1206, 1236
Bsc4I	CCNNNNNNNGG	3 cut(s)	314, 741, 1132
Bse118I	RCCGGY	1 cut(s)	230
Bse1I	ACTGG	2 cut(s)	271, 1415
Bse3DI	GCAATG	2 cut(s)	162, 666
Bse8I	GATNNNNATC	3 cut(s)	185, 620, 1485
BseBI	CCWGG	2 cut(s)	1099, 1283
BseDI	CCNNGG	7 cut(s)	300, 639, 735, 1098, 1225, 1241, 1293
BseGI	GGATG	4 cut(s)	59, 438, 1368, 1420
BseJI	GATNNNNATC	3 cut(s)	185, 620, 1485
BseLI	CCNNNNNNNGG	3 cut(s)	314, 741, 1132
BseMI	GCAATG	2 cut(s)	162, 666
BseMII	CTCAG	2 cut(s)	960, 1345
BseNI	ACTGG	2 cut(s)	271, 1415
BseXI	GCAGC	4 cut(s)	783, 806, 1106, 1152
BsgI	GTGCAG	1 cut(s)	736
BshFI	GGCC	6 cut(s)	85, 230, 450, 1017, 1240, 1286
BshNI	GGYRCC	1 cut(s)	296
BsiSI	CCGG	2 cut(s)	231, 1225
BslFI	GGGAC	1 cut(s)	516
BslI	CCNNNNNNNGG	3 cut(s)	314, 741, 1132
BsmAI	GTCTC	1 cut(s)	991
BsmFI	GGGAC	1 cut(s)	516
BsmI	GAATGC	1 cut(s)	1310
BsnI	GGCC	6 cut(s)	85, 230, 450, 1017, 1240, 1286
Bsp1286I	GDGCHC	2 cut(s)	291, 1332
Bsp143I	GATC	5 cut(s)	615, 672, 679, 769, 1404
Bsp19I	CCATGG	1 cut(s)	300
BspACI	CCGC	1 cut(s)	1233
BspANI	GGCC	6 cut(s)	85, 230, 450, 1017, 1240, 1286
BspCNI	CTCAG	2 cut(s)	959, 1344
BspHI	TCATGA	1 cut(s)	366
BspLI	GGNNCC	4 cut(s)	30, 298, 306, 1231
BspMI	ACCTGC	1 cut(s)	839
BspOI	GCTAGC	1 cut(s)	1250
BspPI	GGATC	2 cut(s)	680, 1412
BspQI	GCTCTTC	1 cut(s)	147
BspT107I	GGYRCC	1 cut(s)	296
BsrDI	GCAATG	2 cut(s)	162, 666
BsrFI	RCCGGY	1 cut(s)	230
BsrI	ACTGG	2 cut(s)	271, 1415
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	7 cut(s)	300, 639, 735, 1098, 1225, 1241, 1293
BssMI	GATC	5 cut(s)	615, 672, 679, 769, 1404
BssT1I	CCWWGG	4 cut(s)	300, 639, 735, 1293
Bst2UI	CCWGG	2 cut(s)	1099, 1283
Bst4CI	ACNGT	1 cut(s)	472
Bst6I	CTCTTC	2 cut(s)	18, 147
BstAPI	GCANNNNNTGC	2 cut(s)	971, 1019
BstDEI	CTNAG	2 cut(s)	946, 1331
BstDSI	CCRYGG	2 cut(s)	300, 1241
BstF5I	GGATG	4 cut(s)	59, 438, 1368, 1420
BstH2I	RGCGCY	1 cut(s)	599
BstHHI	GCGC	2 cut(s)	598, 604
BstKTI	GATC	5 cut(s)	618, 675, 682, 772, 1407
BstMAI	GTCTC	1 cut(s)	991
BstMBI	GATC	5 cut(s)	615, 672, 679, 769, 1404
BstNI	CCWGG	2 cut(s)	1099, 1283
BstNSI	RCATGY	2 cut(s)	972, 1458
BstSCI	CCNGG	3 cut(s)	1097, 1224, 1281
BstSFI	CTRYAG	1 cut(s)	1044
BstV1I	GCAGC	4 cut(s)	783, 806, 1106, 1152
BstV2I	GAAGAC	1 cut(s)	465
BsuRI	GGCC	6 cut(s)	85, 230, 450, 1017, 1240, 1286
BtgI	CCRYGG	2 cut(s)	300, 1241
BtsCI	GGATG	4 cut(s)	59, 438, 1368, 1420
BtsI	GCAGTG	2 cut(s)	906, 1056
BtsIMutI	CAGTG	5 cut(s)	264, 675, 906, 1056, 1339
BveI	ACCTGC	1 cut(s)	839
CaiI	CAGNNNCTG	1 cut(s)	1019
CciI	TCATGA	1 cut(s)	366
CfoI	GCGC	2 cut(s)	598, 604
Cfr10I	RCCGGY	1 cut(s)	230
Cfr13I	GGNCC	3 cut(s)	28, 812, 1016
CseI	GACGC	1 cut(s)	1434
CspCI	CAANNNNNGTGG	2 cut(s)	790, 825
DdeI	CTNAG	2 cut(s)	946, 1331
DpnI	GATC	5 cut(s)	617, 674, 681, 771, 1406
DpnII	GATC	5 cut(s)	615, 672, 679, 769, 1404
DrdI	GACNNNNNNGTC	1 cut(s)	1517
DseDI	GACNNNNNNGTC	1 cut(s)	1517
EaeI	YGGCCR	3 cut(s)	83, 228, 448
Eam1104I	CTCTTC	2 cut(s)	18, 147
EarI	CTCTTC	2 cut(s)	18, 147
Eco130I	CCWWGG	4 cut(s)	300, 639, 735, 1293
Eco24I	GRGCYC	2 cut(s)	291, 1332
Eco47I	GGWCC	2 cut(s)	28, 812
EcoO109I	RGGNCCY	2 cut(s)	28, 1016
EcoRII	CCWGG	2 cut(s)	1097, 1281
EcoT14I	CCWWGG	4 cut(s)	300, 639, 735, 1293
EcoT38I	GRGCYC	2 cut(s)	291, 1332
ErhI	CCWWGG	4 cut(s)	300, 639, 735, 1293
FaqI	GGGAC	1 cut(s)	516
FbaI	TGATCA	1 cut(s)	769
Fnu4HI	GCNGC	4 cut(s)	797, 820, 1095, 1166
FokI	GGATG	4 cut(s)	46, 425, 1375, 1427
FriOI	GRGCYC	2 cut(s)	291, 1332
Fsp4HI	GCNGC	4 cut(s)	797, 820, 1095, 1166
FspBI	CTAG	1 cut(s)	1247
GlaI	GCGC	2 cut(s)	597, 603
GluI	GCNGC	4 cut(s)	797, 820, 1095, 1166
GsuI	CTGGAG	1 cut(s)	348
HaeII	RGCGCY	1 cut(s)	599
HaeIII	GGCC	6 cut(s)	85, 230, 450, 1017, 1240, 1286
HapII	CCGG	2 cut(s)	231, 1225
HgaI	GACGC	1 cut(s)	1434
HhaI	GCGC	2 cut(s)	598, 604
Hin6I	GCGC	2 cut(s)	596, 602
HinP1I	GCGC	2 cut(s)	596, 602
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HindIII	AAGCTT	3 cut(s)	321, 803, 1422
HinfI	GANTC	1 cut(s)	1378
HpaII	CCGG	2 cut(s)	231, 1225
HphI	GGTGA	2 cut(s)	241, 1096
Hpy166II	GTNNAC	2 cut(s)	427, 812
Hpy188I	TCNGA	1 cut(s)	215
Hpy188III	TCNNGA	5 cut(s)	327, 367, 647, 988, 1354
Hpy8I	GTNNAC	2 cut(s)	427, 812
HpyAV	CCTTC	7 cut(s)	66, 359, 371, 582, 734, 745, 749
HpyCH4III	ACNGT	1 cut(s)	472
HpyCH4IV	ACGT	1 cut(s)	1512
HpyF3I	CTNAG	2 cut(s)	946, 1331
HpySE526I	ACGT	1 cut(s)	1512
HspAI	GCGC	2 cut(s)	596, 602
Ksp22I	TGATCA	1 cut(s)	769
Kzo9I	GATC	5 cut(s)	615, 672, 679, 769, 1404
LguI	GCTCTTC	1 cut(s)	147
LmnI	GCTCC	3 cut(s)	329, 351, 1001
Lsp1109I	GCAGC	4 cut(s)	783, 806, 1106, 1152
LweI	GCATC	2 cut(s)	570, 1152
MaeI	CTAG	1 cut(s)	1247
MaeII	ACGT	1 cut(s)	1512
MaeIII	GTNAC	2 cut(s)	262, 1060
MalI	GATC	5 cut(s)	617, 674, 681, 771, 1406
MboI	GATC	5 cut(s)	615, 672, 679, 769, 1404
MboII	GAAGA	6 cut(s)	35, 134, 470, 1165, 1168, 1430
MfeI	CAATTG	1 cut(s)	224
MhlI	GDGCHC	2 cut(s)	291, 1332
MlsI	TGGCCA	2 cut(s)	85, 450
MluCI	AATT	9 cut(s)	16, 160, 224, 513, 654, 726, 1137, 1192, 1218
MluNI	TGGCCA	2 cut(s)	85, 450
Mox20I	TGGCCA	2 cut(s)	85, 450
MscI	TGGCCA	2 cut(s)	85, 450
MseI	TTAA	5 cut(s)	281, 342, 729, 923, 1473
Msp20I	TGGCCA	2 cut(s)	85, 450
MspI	CCGG	2 cut(s)	231, 1225
MspR9I	CCNGG	3 cut(s)	1099, 1226, 1283
MunI	CAATTG	1 cut(s)	224
Mva1269I	GAATGC	1 cut(s)	1310
MvaI	CCWGG	2 cut(s)	1099, 1283
NciI	CCSGG	1 cut(s)	1226
NcoI	CCATGG	1 cut(s)	300
NdeII	GATC	5 cut(s)	615, 672, 679, 769, 1404
NheI	GCTAGC	1 cut(s)	1246
NlaIV	GGNNCC	4 cut(s)	30, 298, 306, 1231
NmeAIII	GCCGAG	1 cut(s)	566
NmuCI	GTSAC	2 cut(s)	262, 1060
NspI	RCATGY	2 cut(s)	972, 1458
PagI	TCATGA	1 cut(s)	366
PciI	ACATGT	1 cut(s)	968
PciSI	GCTCTTC	1 cut(s)	147
PctI	GAATGC	1 cut(s)	1310
PfeI	GAWTC	1 cut(s)	1378
PkrI	GCNGC	4 cut(s)	798, 821, 1096, 1167
PpuMI	RGGWCCY	1 cut(s)	28
PscI	ACATGT	1 cut(s)	968
PshBI	ATTAAT	1 cut(s)	729
Psp5II	RGGWCCY	1 cut(s)	28
Psp6I	CCWGG	2 cut(s)	1097, 1281
PspGI	CCWGG	2 cut(s)	1097, 1281
PspN4I	GGNNCC	4 cut(s)	30, 298, 306, 1231
PspPI	GGNCC	3 cut(s)	28, 812, 1016
PspPPI	RGGWCCY	1 cut(s)	28
PstNI	CAGNNNCTG	1 cut(s)	1019
SapI	GCTCTTC	1 cut(s)	147
SaqAI	TTAA	5 cut(s)	281, 342, 729, 923, 1473
SatI	GCNGC	4 cut(s)	797, 820, 1095, 1166
Sau3AI	GATC	5 cut(s)	615, 672, 679, 769, 1404
Sau96I	GGNCC	3 cut(s)	28, 812, 1016
ScrFI	CCNGG	3 cut(s)	1099, 1226, 1283
SduI	GDGCHC	2 cut(s)	291, 1332
SfaNI	GCATC	2 cut(s)	570, 1152
SfcI	CTRYAG	1 cut(s)	1044
SinI	GGWCC	2 cut(s)	28, 812
SmlI	CTYRAG	2 cut(s)	647, 800
SmoI	CTYRAG	2 cut(s)	647, 800
Sse9I	AATT	9 cut(s)	16, 160, 224, 513, 654, 726, 1137, 1192, 1218
SsiI	CCGC	1 cut(s)	1233
SspI	AATATT	1 cut(s)	340
SspMI	CTAG	1 cut(s)	1247
StyD4I	CCNGG	3 cut(s)	1097, 1224, 1281
StyI	CCWWGG	4 cut(s)	300, 639, 735, 1293
TaaI	ACNGT	1 cut(s)	472
TaiI	ACGT	1 cut(s)	1515
TaqI	TCGA	2 cut(s)	930, 989
TasI	AATT	9 cut(s)	16, 160, 224, 513, 654, 726, 1137, 1192, 1218
TfiI	GAWTC	1 cut(s)	1378
Tru1I	TTAA	5 cut(s)	281, 342, 729, 923, 1473
Tru9I	TTAA	5 cut(s)	281, 342, 729, 923, 1473
TscAI	CASTG	5 cut(s)	271, 682, 906, 1056, 1339
TseFI	GTSAC	2 cut(s)	262, 1060
TseI	GCWGC	4 cut(s)	796, 819, 1094, 1165
Tsp45I	GTSAC	2 cut(s)	262, 1060
TspDTI	ATGAA	3 cut(s)	48, 173, 1431
TspGWI	ACGGA	1 cut(s)	1514
TspRI	CASTG	5 cut(s)	271, 682, 906, 1056, 1339
VpaK11BI	GGWCC	2 cut(s)	28, 812
VspI	ATTAAT	1 cut(s)	729
XapI	RAATTY	3 cut(s)	16, 160, 1192
XceI	RCATGY	2 cut(s)	972, 1458
XcmI	CCANNNNNNNNNTGG	1 cut(s)	898
XspI	CTAG	1 cut(s)	1247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.