Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000708.1

Orthogroup ID

OG0007089

Physical Location & Seq

Genomic Coordinates Forward (+)

98363 .. 98935

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000708.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

atgctgtctctggcaacatgtgcgtcgactcgagtctcaaatgagctcggagcaaacagggcaggacctgcataccaatctgcatttgtgtctctggcagtgagtatggtctctggttgtttaggtggattggtgatggtagcagccaggggaagttgggggtcgttgtttagccacgataaggggattgtaagaggtgtgaagaagatgatgctgctcatggctttggtggaggttgtgaatttcccattagctgcttgcggagggattgttcgaggaacagcgaggccatggttggctatgtatgcaaatcttggtggattctaccttctggctttgcccttgggagttgttttagccttcgaggttaaactcgggctgagtggactattgataggattcttgattgggatggttgcttgcttgattttgttgctgatctttgttttaagaatcaattgggatgaagaagcgtgcaaagcacaaagacttgcctcactttcctgtcaagcaccagaacttaacaaacacgaaaaccacaaaagcgtggggagagtcgatgccgaagtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0008150 GO:0009987 GO:0010033 GO:0010035 GO:0010037 GO:0010119 GO:0015238 GO:0015691 GO:0015893 GO:0016020 GO:0022857 GO:0030001 GO:0035690 GO:0042221 GO:0042493 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051716 GO:0055085 GO:0065007 GO:0065008 GO:0070838 GO:0070887 GO:0071241 GO:0071244 GO:0071944 GO:0072347 GO:0072511 GO:1901700 GO:1901701 GO:1902456

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

190

Amino Acids

20.11

Weight (kDa)

9.02

Isoelectric Point (pI)

34.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22790
fragaria_vesca	FvH4_5g00900
malus_domestica	MD06G1067200.v1.1 MD06G1067400.v1.1 MD17G1137500.v1.1
prunus_persica	Prupe.5G082100_v2.0.a1
pyrus_communis	pycom06g06480
rosa_chinensis	RchiOBHm_Chr7g0200481 RchiOBHm_Chr7g0200881
rosa_laevigata	RLG00000003709 RLG00000003722
rosa_multiflora	Rmu_sc0000617.1_g000024 Rmu_sc0000708.1_g000018
rosa_roxburghii	Rroxscaffold_3G00255930
rosa_rugosa	Rorug07G0060600
rosa_samantha	Rh7AG186100 Rh7AG186200 Rh7BG189200 Rh7CG196300 Rh7CG197000 Rh7DG190200 Rh7DG192000 Rh7DG192100
rosa_wichuraiana	Rw7G016330 Rw7G016390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	76
AccI	GTMKAC	1 cut(s)	26
AciI	CCGC	1 cut(s)	261
AcsI	RAATTY	1 cut(s)	241
AfiI	CCNNNNNNNGG	1 cut(s)	181
AflIII	ACRYGT	1 cut(s)	17
AjnI	CCWGG	1 cut(s)	146
AloI	GAACNNNNNNTCC	2 cut(s)	255, 287
AluBI	AGCT	2 cut(s)	46, 254
AluI	AGCT	2 cut(s)	46, 254
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	4 cut(s)	12, 40, 96, 115
AlwNI	CAGNNNCTG	1 cut(s)	68
Ama87I	CYCGRG	2 cut(s)	30, 374
AoxI	GGCC	1 cut(s)	287
ApeKI	GCWGC	3 cut(s)	143, 214, 254
ApoI	RAATTY	1 cut(s)	241
AspS9I	GGNCC	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	145
AvaI	CYCGRG	2 cut(s)	30, 374
AvaII	GGWCC	1 cut(s)	65
BanII	GRGCYC	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	3 cut(s)	155, 201, 241
BccI	CCATC	2 cut(s)	130, 406
BciT130I	CCWGG	1 cut(s)	148
BcoDI	GTCTC	4 cut(s)	12, 40, 96, 115
BfuAI	ACCTGC	1 cut(s)	76
BisI	GCNGC	3 cut(s)	144, 215, 255
BlsI	GCNGC	3 cut(s)	145, 216, 256
Bme1390I	CCNGG	1 cut(s)	148
Bme18I	GGWCC	1 cut(s)	65
BmeT110I	CYCGRG	2 cut(s)	30, 374
BmgT120I	GGNCC	1 cut(s)	65
BmrFI	CCNGG	1 cut(s)	148
BmsI	GCATC	2 cut(s)	201, 550
BoxI	GACNNNNGTC	1 cut(s)	32
BsaI	GGTCTC	1 cut(s)	115
BsaJI	CCNNGG	3 cut(s)	147, 290, 342
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	3 cut(s)	147, 290, 342
BseGI	GGATG	2 cut(s)	417, 469
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	371
BseXI	GCAGC	3 cut(s)	155, 201, 241
BshFI	GGCC	1 cut(s)	289
BsiHKAI	GWGCWC	1 cut(s)	48
BsiHKCI	CYCGRG	2 cut(s)	30, 374
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmAI	GTCTC	4 cut(s)	12, 40, 96, 115
BsnI	GGCC	1 cut(s)	289
Bso31I	GGTCTC	1 cut(s)	115
BsoBI	CYCGRG	2 cut(s)	30, 374
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	438
Bsp19I	CCATGG	1 cut(s)	290
BspACI	CCGC	1 cut(s)	261
BspANI	GGCC	1 cut(s)	289
BspCNI	CTCAG	1 cut(s)	372
BspMI	ACCTGC	1 cut(s)	76
BspTNI	GGTCTC	1 cut(s)	115
BssECI	CCNNGG	3 cut(s)	147, 290, 342
BssMI	GATC	1 cut(s)	438
BssT1I	CCWWGG	2 cut(s)	290, 342
Bst2UI	CCWGG	1 cut(s)	148
BstAPI	GCANNNNNTGC	2 cut(s)	20, 68
BstC8I	GCNNGC	3 cut(s)	259, 421, 475
BstDEI	CTNAG	1 cut(s)	380
BstDSI	CCRYGG	1 cut(s)	290
BstF5I	GGATG	2 cut(s)	417, 469
BstKTI	GATC	1 cut(s)	441
BstMAI	GTCTC	4 cut(s)	12, 40, 96, 115
BstMBI	GATC	1 cut(s)	438
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 59, 68, 305, 479
BstNI	CCWGG	1 cut(s)	148
BstNSI	RCATGY	1 cut(s)	21
BstPAI	GACNNNNGTC	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	146
BstV1I	GCAGC	3 cut(s)	155, 201, 241
BsuRI	GGCC	1 cut(s)	289
BtgI	CCRYGG	1 cut(s)	290
BtsCI	GGATG	2 cut(s)	417, 469
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	105
BveI	ACCTGC	1 cut(s)	76
Cac8I	GCNNGC	3 cut(s)	259, 421, 475
CaiI	CAGNNNCTG	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	65
CseI	GACGC	1 cut(s)	12
CviAII	CATG	3 cut(s)	18, 220, 291
DdeI	CTNAG	1 cut(s)	380
DpnI	GATC	1 cut(s)	440
DpnII	GATC	1 cut(s)	438
Ecl136II	GAGCTC	1 cut(s)	46
Eco130I	CCWWGG	2 cut(s)	290, 342
Eco24I	GRGCYC	1 cut(s)	48
Eco31I	GGTCTC	1 cut(s)	115
Eco47I	GGWCC	1 cut(s)	65
Eco53kI	GAGCTC	1 cut(s)	46
Eco88I	CYCGRG	2 cut(s)	30, 374
EcoICRI	GAGCTC	1 cut(s)	46
EcoO109I	RGGNCCY	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	146
EcoT14I	CCWWGG	2 cut(s)	290, 342
EcoT38I	GRGCYC	1 cut(s)	48
ErhI	CCWWGG	2 cut(s)	290, 342
FaeI	CATG	3 cut(s)	21, 223, 294
FaiI	YATR	7 cut(s)	19, 73, 107, 221, 292, 302, 306
FatI	CATG	3 cut(s)	17, 219, 290
FblI	GTMKAC	1 cut(s)	26
Fnu4HI	GCNGC	3 cut(s)	144, 215, 255
FokI	GGATG	2 cut(s)	424, 476
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	3 cut(s)	144, 215, 255
GluI	GCNGC	3 cut(s)	144, 215, 255
HaeIII	GGCC	1 cut(s)	289
HgaI	GACGC	1 cut(s)	12
Hin1II	CATG	3 cut(s)	21, 223, 294
HincII	GTYRAC	1 cut(s)	27
HindII	GTYRAC	1 cut(s)	27
HinfI	GANTC	6 cut(s)	28, 33, 321, 399, 453, 555
HphI	GGTGA	1 cut(s)	145
Hpy166II	GTNNAC	2 cut(s)	27, 386
Hpy188I	TCNGA	1 cut(s)	50
Hpy188III	TCNNGA	1 cut(s)	403
Hpy8I	GTNNAC	2 cut(s)	27, 386
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	2 cut(s)	338, 370
HpyCH4V	TGCA	4 cut(s)	71, 83, 308, 477
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 59, 68, 305, 479
HpyF3I	CTNAG	1 cut(s)	380
Hsp92II	CATG	3 cut(s)	21, 223, 294
Kzo9I	GATC	1 cut(s)	438
LmnI	GCTCC	1 cut(s)	50
Lsp1109I	GCAGC	3 cut(s)	155, 201, 241
LweI	GCATC	2 cut(s)	201, 550
MalI	GATC	1 cut(s)	440
MboI	GATC	1 cut(s)	438
MboII	GAAGA	3 cut(s)	214, 217, 479
MfeI	CAATTG	1 cut(s)	457
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	2 cut(s)	241, 457
MlyI	GAGTC	3 cut(s)	22, 42, 564
MnlI	CCTC	7 cut(s)	188, 226, 257, 269, 279, 358, 505
MseI	TTAA	3 cut(s)	369, 449, 522
MspR9I	CCNGG	1 cut(s)	148
MunI	CAATTG	1 cut(s)	457
MvaI	CCWGG	1 cut(s)	148
MwoI	GCNNNNNNNGC	5 cut(s)	20, 59, 68, 305, 479
NcoI	CCATGG	1 cut(s)	290
NdeII	GATC	1 cut(s)	438
NlaIII	CATG	3 cut(s)	21, 223, 294
NspI	RCATGY	1 cut(s)	21
PaeR7I	CTCGAG	1 cut(s)	30
PciI	ACATGT	1 cut(s)	17
PfeI	GAWTC	3 cut(s)	321, 399, 453
PkrI	GCNGC	3 cut(s)	145, 216, 256
PleI	GAGTC	3 cut(s)	22, 41, 563
PpsI	GAGTC	3 cut(s)	22, 41, 563
PpuMI	RGGWCCY	1 cut(s)	65
PscI	ACATGT	1 cut(s)	17
PshAI	GACNNNNGTC	1 cut(s)	32
Psp124BI	GAGCTC	1 cut(s)	48
Psp5II	RGGWCCY	1 cut(s)	65
Psp6I	CCWGG	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	146
PspPI	GGNCC	1 cut(s)	65
PspPPI	RGGWCCY	1 cut(s)	65
PspXI	VCTCGAGB	1 cut(s)	30
PstNI	CAGNNNCTG	1 cut(s)	68
SacI	GAGCTC	1 cut(s)	48
SalI	GTCGAC	1 cut(s)	25
SaqAI	TTAA	3 cut(s)	369, 449, 522
SatI	GCNGC	3 cut(s)	144, 215, 255
Sau3AI	GATC	1 cut(s)	438
Sau96I	GGNCC	1 cut(s)	65
SchI	GAGTC	3 cut(s)	22, 42, 564
ScrFI	CCNGG	1 cut(s)	148
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	8 cut(s)	48, 70, 127, 199, 237, 256, 330, 369
SfaNI	GCATC	2 cut(s)	201, 550
Sfr274I	CTCGAG	1 cut(s)	30
SinI	GGWCC	1 cut(s)	65
SlaI	CTCGAG	1 cut(s)	30
SmlI	CTYRAG	1 cut(s)	30
SmoI	CTYRAG	1 cut(s)	30
Sse9I	AATT	2 cut(s)	241, 457
SsiI	CCGC	1 cut(s)	261
SstI	GAGCTC	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	146
StyI	CCWWGG	2 cut(s)	290, 342
TaqI	TCGA	5 cut(s)	26, 31, 274, 363, 558
TasI	AATT	2 cut(s)	241, 457
TfiI	GAWTC	3 cut(s)	321, 399, 453
Tru1I	TTAA	3 cut(s)	369, 449, 522
Tru9I	TTAA	3 cut(s)	369, 449, 522
TscAI	CASTG	1 cut(s)	105
TseI	GCWGC	3 cut(s)	143, 214, 254
TspDTI	ATGAA	1 cut(s)	480
TspRI	CASTG	1 cut(s)	105
VpaK11BI	GGWCC	1 cut(s)	65
XapI	RAATTY	1 cut(s)	241
XceI	RCATGY	1 cut(s)	21
XhoI	CTCGAG	1 cut(s)	30
XmiI	GTMKAC	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.