Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0007089

Physical Location & Seq

Genomic Coordinates Reverse (-)

51907385 .. 51908735

Gene Structure 1351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003709

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGTTTGCCAAAATAGCCATTACAACAGCTTTTCTAGGAAGACTCGGAGAGCTTCAACTGGCTGGTGGCACACTCGGTTTCACTTTCGCTATGTCACCGGCTTCTCTGTCTTGAGTGGTCTCTGTGGTGCCATGGAGCCCACTTGGTTATTACAGCATTGCTTTGTCCCCTCAAAGCCTACTTCGCAAGGCATCACGGTTCCTCCCATGTTCTGCTCAGGTCTCGCTCTTGCCTTTCACATACCAATCAACATAGTGCTTGCAAACGCTAAAGGAATTGAGGGAGTTGCAATGTCTGTCTGGATCACTGACCTTATGGTTGTGATTCTCCTTGCAATTTATGTGTGTGTGATTGAAGTTAAGGCAAAAGAAGGGAGGAGGAAAGAAGGCGGGTGGCTGGACCAAGGTGTTCGGGATTGGATTAGGCTGCTCAAGCTTTGTGGACCTTGCTGCCTCACTACCTGCCTAGAATGGTGGTGCTATGAGATTCTGGTCCTGTTAACTGGCCGGCTTGCCAATGCCAAGCAGGCAGTCGGAGTTTTAGCCATCGTACTAAACTTCGACTACTTGCTATACTCGGTGATGCTGTCTCTGGCAACATGTGCGGCGACTCGAGTCTCAAATGAGCTCGGAGCAAACAGGGCAGGACCTGCATACCAATCTGCATTTGTGTCTCTGGCAGTGAGTTTGGTCTCTGGTTGTTTAGGTGGATTGGTGATGGTAGCAGCCAGGGGAAGTTGGGGGTCGTTGTTTAGCCACGATAAGGGGATTGTAAGAGGTGTGAAGAAGATGATGCTGCTCATGGCTTTGGTGGAGGTTGTGAATTTCCCATTAGCTGCTTGCGGAGGGATTGTTCGAGGAACAGCGAGGCCATGGTTGGCTATGTATGCAAATCTTGGTGGATTCTACCTTCTGGCTTTGCCCTTGGGAGTTGTTTTAGCCTTCGAGGTTAAACTCGGGCTGAGTGGACTATTGATAGGATTCTTGATTGGGATGGTTGCTTGCTTGATTTTGTTGCTGATCTTTGTTTTAAGAATCAATTGGGATGAAGAAGCGTGCAAAGCACAAAGACTTGCCTCACTTTCCTGTCAAGCACCAGAACTTAACAAACACGAAAACCACAAAAGCGTGGGGAGAGTCGATGCCGAAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0008150 GO:0009987 GO:0010033 GO:0010035 GO:0010037 GO:0010119 GO:0015238 GO:0015691 GO:0015893 GO:0016020 GO:0022857 GO:0030001 GO:0035690 GO:0042221 GO:0042493 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051716 GO:0055085 GO:0065007 GO:0065008 GO:0070838 GO:0070887 GO:0071241 GO:0071244 GO:0071944 GO:0072347 GO:0072511 GO:1901700 GO:1901701 GO:1902456

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

385

Amino Acids

41.86

Weight (kDa)

9.06

Isoelectric Point (pI)

36.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	149 - 311	1.3e-29	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22790
fragaria_vesca	FvH4_5g00900
malus_domestica	MD06G1067200.v1.1 MD06G1067400.v1.1 MD17G1137500.v1.1
prunus_persica	Prupe.5G082100_v2.0.a1
pyrus_communis	pycom06g06480
rosa_chinensis	RchiOBHm_Chr7g0200481 RchiOBHm_Chr7g0200881
rosa_laevigata	RLG00000003709 RLG00000003722
rosa_multiflora	Rmu_sc0000617.1_g000024 Rmu_sc0000708.1_g000018
rosa_roxburghii	Rroxscaffold_3G00255930
rosa_rugosa	Rorug07G0060600
rosa_samantha	Rh7AG186100 Rh7AG186200 Rh7BG189200 Rh7CG196300 Rh7CG197000 Rh7DG190200 Rh7DG192000 Rh7DG192100
rosa_wichuraiana	Rw7G016330 Rw7G016390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	470, 658
AccB1I	GGYRCC	1 cut(s)	128
AciI	CCGC	3 cut(s)	390, 605, 843
AclWI	GGATC	1 cut(s)	311
AcoI	YGGCCR	1 cut(s)	505
AcsI	RAATTY	1 cut(s)	823
AfaI	GTAC	1 cut(s)	552
AfiI	CCNNNNNNNGG	1 cut(s)	763
AflIII	ACRYGT	1 cut(s)	599
AgsI	TTSAA	2 cut(s)	57, 356
AjnI	CCWGG	1 cut(s)	728
AloI	GAACNNNNNNTCC	2 cut(s)	837, 869
AluBI	AGCT	5 cut(s)	30, 53, 436, 628, 836
AluI	AGCT	5 cut(s)	30, 53, 436, 628, 836
Alw21I	GWGCWC	1 cut(s)	630
Alw26I	GTCTC	6 cut(s)	125, 227, 594, 622, 678, 697
AlwI	GGATC	1 cut(s)	311
AlwNI	CAGNNNCTG	1 cut(s)	650
Ama87I	CYCGRG	2 cut(s)	612, 956
AoxI	GGCC	2 cut(s)	505, 869
ApeKI	GCWGC	5 cut(s)	427, 450, 725, 796, 836
ApoI	RAATTY	1 cut(s)	823
AspS9I	GGNCC	4 cut(s)	400, 443, 493, 647
AsuHPI	GGTGA	3 cut(s)	88, 592, 727
AvaI	CYCGRG	2 cut(s)	612, 956
AvaII	GGWCC	4 cut(s)	400, 443, 493, 647
BanI	GGYRCC	1 cut(s)	128
BanII	GRGCYC	2 cut(s)	141, 630
BbsI	GAAGAC	1 cut(s)	47
Bbv12I	GWGCWC	1 cut(s)	630
BbvI	GCAGC	5 cut(s)	414, 437, 737, 783, 823
BccI	CCATC	3 cut(s)	554, 712, 988
BciT130I	CCWGG	1 cut(s)	730
BcoDI	GTCTC	6 cut(s)	125, 227, 594, 622, 678, 697
BfaI	CTAG	2 cut(s)	36, 467
BfuAI	ACCTGC	2 cut(s)	470, 658
BglI	GCCNNNNNGGC	1 cut(s)	527
BisI	GCNGC	6 cut(s)	428, 451, 606, 726, 797, 837
BlsI	GCNGC	6 cut(s)	429, 452, 607, 727, 798, 838
Bme1390I	CCNGG	1 cut(s)	730
Bme18I	GGWCC	4 cut(s)	400, 443, 493, 647
BmeT110I	CYCGRG	2 cut(s)	612, 956
BmgT120I	GGNCC	4 cut(s)	400, 443, 493, 647
BmiI	GGNNCC	3 cut(s)	130, 138, 201
BmrFI	CCNGG	1 cut(s)	730
BmsI	GCATC	4 cut(s)	201, 573, 783, 1132
BoxI	GACNNNNGTC	1 cut(s)	614
BpiI	GAAGAC	1 cut(s)	47
Bpu10I	CCTNAGC	1 cut(s)	217
BpuEI	CTTGAG	2 cut(s)	133, 416
BsaI	GGTCTC	3 cut(s)	125, 227, 697
BsaJI	CCNNGG	5 cut(s)	132, 403, 729, 872, 924
BsaXI	ACNNNNNCTCC	4 cut(s)	187, 217, 837, 867
Bsc4I	CCNNNNNNNGG	1 cut(s)	763
Bse118I	RCCGGY	2 cut(s)	98, 507
Bse1I	ACTGG	2 cut(s)	64, 508
Bse3DI	GCAATG	2 cut(s)	157, 297
BseBI	CCWGG	1 cut(s)	730
BseDI	CCNNGG	5 cut(s)	132, 403, 729, 872, 924
BseGI	GGATG	2 cut(s)	999, 1051
BseLI	CCNNNNNNNGG	1 cut(s)	763
BseMI	GCAATG	2 cut(s)	157, 297
BseMII	CTCAG	2 cut(s)	231, 953
BseNI	ACTGG	2 cut(s)	64, 508
BseRI	GAGGAG	1 cut(s)	391
BseXI	GCAGC	5 cut(s)	414, 437, 737, 783, 823
BshFI	GGCC	2 cut(s)	507, 871
BshNI	GGYRCC	1 cut(s)	128
BsiHKAI	GWGCWC	1 cut(s)	630
BsiHKCI	CYCGRG	2 cut(s)	612, 956
BsiSI	CCGG	2 cut(s)	99, 508
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	763
BsmAI	GTCTC	6 cut(s)	125, 227, 594, 622, 678, 697
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	2 cut(s)	507, 871
Bso31I	GGTCTC	3 cut(s)	125, 227, 697
BsoBI	CYCGRG	2 cut(s)	612, 956
Bsp1286I	GDGCHC	2 cut(s)	141, 630
Bsp143I	GATC	2 cut(s)	303, 1020
Bsp19I	CCATGG	2 cut(s)	132, 872
BspACI	CCGC	3 cut(s)	390, 605, 843
BspANI	GGCC	2 cut(s)	507, 871
BspCNI	CTCAG	2 cut(s)	230, 954
BspLI	GGNNCC	3 cut(s)	130, 138, 201
BspMI	ACCTGC	2 cut(s)	470, 658
BspPI	GGATC	1 cut(s)	311
BspT107I	GGYRCC	1 cut(s)	128
BspTNI	GGTCTC	3 cut(s)	125, 227, 697
BsrDI	GCAATG	2 cut(s)	157, 297
BsrFI	RCCGGY	2 cut(s)	98, 507
BsrI	ACTGG	2 cut(s)	64, 508
BssAI	RCCGGY	2 cut(s)	98, 507
BssECI	CCNNGG	5 cut(s)	132, 403, 729, 872, 924
BssMI	GATC	2 cut(s)	303, 1020
BssT1I	CCWWGG	4 cut(s)	132, 403, 872, 924
Bst2UI	CCWGG	1 cut(s)	730
Bst4CI	ACNGT	1 cut(s)	199
BstAPI	GCANNNNNTGC	2 cut(s)	602, 650
BstC8I	GCNNGC	7 cut(s)	261, 509, 513, 528, 841, 1003, 1057
BstDEI	CTNAG	2 cut(s)	217, 962
BstDSI	CCRYGG	2 cut(s)	132, 872
BstF5I	GGATG	2 cut(s)	999, 1051
BstKTI	GATC	2 cut(s)	306, 1023
BstMAI	GTCTC	6 cut(s)	125, 227, 594, 622, 678, 697
BstMBI	GATC	2 cut(s)	303, 1020
BstMWI	GCNNNNNNNGC	9 cut(s)	15, 184, 433, 527, 602, 641, 650, 887, 1061
BstNI	CCWGG	1 cut(s)	730
BstNSI	RCATGY	1 cut(s)	603
BstPAI	GACNNNNGTC	1 cut(s)	614
BstSCI	CCNGG	1 cut(s)	728
BstV1I	GCAGC	5 cut(s)	414, 437, 737, 783, 823
BstV2I	GAAGAC	1 cut(s)	47
BsuRI	GGCC	2 cut(s)	507, 871
BtgI	CCRYGG	2 cut(s)	132, 872
BtsCI	GGATG	2 cut(s)	999, 1051
BtsI	GCAGTG	1 cut(s)	687
BtsIMutI	CAGTG	2 cut(s)	306, 687
BveI	ACCTGC	2 cut(s)	470, 658
Cac8I	GCNNGC	7 cut(s)	261, 509, 513, 528, 841, 1003, 1057
CaiI	CAGNNNCTG	1 cut(s)	650
Cfr10I	RCCGGY	2 cut(s)	98, 507
Cfr13I	GGNCC	4 cut(s)	400, 443, 493, 647
Csp6I	GTAC	1 cut(s)	551
CspCI	CAANNNNNGTGG	2 cut(s)	421, 456
CviAII	CATG	5 cut(s)	133, 208, 600, 802, 873
CviQI	GTAC	1 cut(s)	551
DdeI	CTNAG	2 cut(s)	217, 962
DpnI	GATC	2 cut(s)	305, 1022
DpnII	GATC	2 cut(s)	303, 1020
EaeI	YGGCCR	1 cut(s)	505
Ecl136II	GAGCTC	1 cut(s)	628
Eco130I	CCWWGG	4 cut(s)	132, 403, 872, 924
Eco24I	GRGCYC	2 cut(s)	141, 630
Eco31I	GGTCTC	3 cut(s)	125, 227, 697
Eco47I	GGWCC	4 cut(s)	400, 443, 493, 647
Eco53kI	GAGCTC	1 cut(s)	628
Eco88I	CYCGRG	2 cut(s)	612, 956
EcoICRI	GAGCTC	1 cut(s)	628
EcoO109I	RGGNCCY	1 cut(s)	647
EcoRII	CCWGG	1 cut(s)	728
EcoT14I	CCWWGG	4 cut(s)	132, 403, 872, 924
EcoT38I	GRGCYC	2 cut(s)	141, 630
ErhI	CCWWGG	4 cut(s)	132, 403, 872, 924
FaeI	CATG	5 cut(s)	136, 211, 603, 805, 876
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	5 cut(s)	132, 207, 599, 801, 872
FauI	CCCGC	1 cut(s)	383
Fnu4HI	GCNGC	6 cut(s)	428, 451, 606, 726, 797, 837
FokI	GGATG	2 cut(s)	1006, 1058
FriOI	GRGCYC	2 cut(s)	141, 630
Fsp4HI	GCNGC	6 cut(s)	428, 451, 606, 726, 797, 837
FspBI	CTAG	2 cut(s)	36, 467
GluI	GCNGC	6 cut(s)	428, 451, 606, 726, 797, 837
HaeIII	GGCC	2 cut(s)	507, 871
HapII	CCGG	2 cut(s)	99, 508
Hin1II	CATG	5 cut(s)	136, 211, 603, 805, 876
HincII	GTYRAC	1 cut(s)	501
HindII	GTYRAC	1 cut(s)	501
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	9 cut(s)	43, 325, 487, 610, 615, 903, 981, 1035, 1137
HpaI	GTTAAC	1 cut(s)	501
HpaII	CCGG	2 cut(s)	99, 508
HphI	GGTGA	3 cut(s)	88, 592, 727
Hpy166II	GTNNAC	3 cut(s)	443, 501, 968
Hpy188I	TCNGA	3 cut(s)	48, 536, 632
Hpy188III	TCNNGA	4 cut(s)	112, 301, 413, 985
Hpy8I	GTNNAC	3 cut(s)	443, 501, 968
HpyAV	CCTTC	4 cut(s)	365, 380, 920, 952
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	7 cut(s)	263, 290, 335, 653, 665, 890, 1059
HpyF10VI	GCNNNNNNNGC	9 cut(s)	15, 184, 433, 527, 602, 641, 650, 887, 1061
HpyF3I	CTNAG	2 cut(s)	217, 962
Hsp92II	CATG	5 cut(s)	136, 211, 603, 805, 876
KroI	GCCGGC	1 cut(s)	507
KroNI	GCCGGC	1 cut(s)	509
KspAI	GTTAAC	1 cut(s)	501
Kzo9I	GATC	2 cut(s)	303, 1020
LmnI	GCTCC	2 cut(s)	136, 632
Lsp1109I	GCAGC	5 cut(s)	414, 437, 737, 783, 823
LweI	GCATC	4 cut(s)	201, 573, 783, 1132
MaeI	CTAG	2 cut(s)	36, 467
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	2 cut(s)	305, 1022
MboI	GATC	2 cut(s)	303, 1020
MboII	GAAGA	4 cut(s)	52, 796, 799, 1061
MfeI	CAATTG	1 cut(s)	1039
MhlI	GDGCHC	2 cut(s)	141, 630
MluCI	AATT	4 cut(s)	276, 336, 823, 1039
MlyI	GAGTC	4 cut(s)	37, 604, 624, 1146
MmeI	TCCRAC	1 cut(s)	514
MroNI	GCCGGC	1 cut(s)	507
MseI	TTAA	5 cut(s)	360, 500, 951, 1031, 1104
MspI	CCGG	2 cut(s)	99, 508
MspR9I	CCNGG	1 cut(s)	730
MunI	CAATTG	1 cut(s)	1039
MvaI	CCWGG	1 cut(s)	730
MwoI	GCNNNNNNNGC	9 cut(s)	15, 184, 433, 527, 602, 641, 650, 887, 1061
NaeI	GCCGGC	1 cut(s)	509
NcoI	CCATGG	2 cut(s)	132, 872
NdeII	GATC	2 cut(s)	303, 1020
NgoMIV	GCCGGC	1 cut(s)	507
NlaIII	CATG	5 cut(s)	136, 211, 603, 805, 876
NlaIV	GGNNCC	3 cut(s)	130, 138, 201
NmuCI	GTSAC	1 cut(s)	94
NspI	RCATGY	1 cut(s)	603
PaeR7I	CTCGAG	1 cut(s)	612
PciI	ACATGT	1 cut(s)	599
PdiI	GCCGGC	1 cut(s)	509
PfeI	GAWTC	5 cut(s)	325, 487, 903, 981, 1035
PkrI	GCNGC	6 cut(s)	429, 452, 607, 727, 798, 838
PleI	GAGTC	4 cut(s)	37, 604, 623, 1145
PpsI	GAGTC	4 cut(s)	37, 604, 623, 1145
PpuMI	RGGWCCY	1 cut(s)	647
PscI	ACATGT	1 cut(s)	599
PshAI	GACNNNNGTC	1 cut(s)	614
Psp124BI	GAGCTC	1 cut(s)	630
Psp5II	RGGWCCY	1 cut(s)	647
Psp6I	CCWGG	1 cut(s)	728
PspGI	CCWGG	1 cut(s)	728
PspN4I	GGNNCC	3 cut(s)	130, 138, 201
PspPI	GGNCC	4 cut(s)	400, 443, 493, 647
PspPPI	RGGWCCY	1 cut(s)	647
PspXI	VCTCGAGB	1 cut(s)	612
PstNI	CAGNNNCTG	1 cut(s)	650
RsaI	GTAC	1 cut(s)	552
RsaNI	GTAC	1 cut(s)	551
SacI	GAGCTC	1 cut(s)	630
SaqAI	TTAA	5 cut(s)	360, 500, 951, 1031, 1104
SatI	GCNGC	6 cut(s)	428, 451, 606, 726, 797, 837
Sau3AI	GATC	2 cut(s)	303, 1020
Sau96I	GGNCC	4 cut(s)	400, 443, 493, 647
SchI	GAGTC	4 cut(s)	37, 604, 624, 1146
ScrFI	CCNGG	1 cut(s)	730
SduI	GDGCHC	2 cut(s)	141, 630
SfaNI	GCATC	4 cut(s)	201, 573, 783, 1132
Sfr274I	CTCGAG	1 cut(s)	612
SinI	GGWCC	4 cut(s)	400, 443, 493, 647
SlaI	CTCGAG	1 cut(s)	612
SmlI	CTYRAG	3 cut(s)	112, 431, 612
SmoI	CTYRAG	3 cut(s)	112, 431, 612
Sse9I	AATT	4 cut(s)	276, 336, 823, 1039
SsiI	CCGC	3 cut(s)	390, 605, 843
SspMI	CTAG	2 cut(s)	36, 467
SstI	GAGCTC	1 cut(s)	630
StyD4I	CCNGG	1 cut(s)	728
StyI	CCWWGG	4 cut(s)	132, 403, 872, 924
TaaI	ACNGT	1 cut(s)	199
TaqI	TCGA	5 cut(s)	561, 613, 856, 945, 1140
TasI	AATT	4 cut(s)	276, 336, 823, 1039
TauI	GCSGC	1 cut(s)	608
TfiI	GAWTC	5 cut(s)	325, 487, 903, 981, 1035
Tru1I	TTAA	5 cut(s)	360, 500, 951, 1031, 1104
Tru9I	TTAA	5 cut(s)	360, 500, 951, 1031, 1104
TscAI	CASTG	2 cut(s)	313, 687
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	5 cut(s)	427, 450, 725, 796, 836
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	1 cut(s)	1062
TspRI	CASTG	2 cut(s)	313, 687
VpaK11BI	GGWCC	4 cut(s)	400, 443, 493, 647
XapI	RAATTY	1 cut(s)	823
XceI	RCATGY	1 cut(s)	603
XhoI	CTCGAG	1 cut(s)	612
XspI	CTAG	2 cut(s)	36, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.