Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0007089

Physical Location & Seq

Genomic Coordinates Reverse (-)

15119386 .. 15119922

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1067400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTCTGCAACAACAATATCAAATTTGGAAGACAACCCAACTGAGAAAACCTTTCAGAAATGGCCATCCAATTTCTTCAAGGTTACGCTTTTGGAGCTGAAAATACAAAGGGAAATAGCTCTTCCTCTTGTGGCAGTGAACTTGACATGGTTTGCCAAGATAGGCATCACAACAGCTTTTCTTGGCAGGCTCGGGGAGCTCCAACTGGCTGGCGGTACGCTTGGCTTCACTTTTGCTAATGTCACCGGCTTCTCAGTTTTAAATGGGCTCTGTGCTGCCATGGAACCTATTTGTGGTCAAGCTTTTGGAGCTAGAAATATAAAGCTCCTCCACAAAGCCCTTCTCATGACAACTTTCTTGCTGCTCCTCGCAATGCTTCCTATTTGGTTCTTGTGGCTCAATGTTGACAAAATCCTCATCCATTTTGGCCAGCAAGAAGACATTTCAATGATTGCGAAGACCTACCTCTTCTATCTCTTGCCAGACTTGCTAGTTACTTCACTCTTATGTCCCATTAAGGCCTACTTGAACTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0008150 GO:0009987 GO:0010033 GO:0010035 GO:0010037 GO:0010119 GO:0015238 GO:0015691 GO:0015893 GO:0016020 GO:0022857 GO:0030001 GO:0035690 GO:0042221 GO:0042493 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051716 GO:0055085 GO:0065007 GO:0065008 GO:0070838 GO:0070887 GO:0071241 GO:0071244 GO:0071944 GO:0072347 GO:0072511 GO:1901700 GO:1901701 GO:1902456

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

179

Amino Acids

19.83

Weight (kDa)

8.46

Isoelectric Point (pI)

26.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	56 - 178	1.5e-25	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22790
fragaria_vesca	FvH4_5g00900
malus_domestica	MD06G1067200.v1.1 MD06G1067400.v1.1 MD17G1137500.v1.1
prunus_persica	Prupe.5G082100_v2.0.a1
pyrus_communis	pycom06g06480
rosa_chinensis	RchiOBHm_Chr7g0200481 RchiOBHm_Chr7g0200881
rosa_laevigata	RLG00000003709 RLG00000003722
rosa_multiflora	Rmu_sc0000617.1_g000024 Rmu_sc0000708.1_g000018
rosa_roxburghii	Rroxscaffold_3G00255930
rosa_rugosa	Rorug07G0060600
rosa_samantha	Rh7AG186100 Rh7AG186200 Rh7BG189200 Rh7CG196300 Rh7CG197000 Rh7DG190200 Rh7DG192000 Rh7DG192100
rosa_wichuraiana	Rw7G016330 Rw7G016390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	213
AcoI	YGGCCR	2 cut(s)	62, 427
AcsI	RAATTY	1 cut(s)	22
AfaI	GTAC	1 cut(s)	217
AfiI	CCNNNNNNNGG	1 cut(s)	293
AgsI	TTSAA	3 cut(s)	79, 447, 529
AluBI	AGCT	7 cut(s)	97, 119, 176, 199, 302, 311, 325
AluI	AGCT	7 cut(s)	97, 119, 176, 199, 302, 311, 325
Alw21I	GWGCWC	1 cut(s)	201
Ama87I	CYCGRG	1 cut(s)	191
AoxI	GGCC	3 cut(s)	62, 427, 519
ApeKI	GCWGC	2 cut(s)	275, 361
ApoI	RAATTY	1 cut(s)	22
AsuHPI	GGTGA	1 cut(s)	235
AvaI	CYCGRG	1 cut(s)	191
BalI	TGGCCA	2 cut(s)	64, 429
BanII	GRGCYC	2 cut(s)	201, 270
BbsI	GAAGAC	3 cut(s)	36, 444, 464
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	2 cut(s)	262, 348
BccI	CCATC	1 cut(s)	73
BfaI	CTAG	2 cut(s)	312, 491
BisI	GCNGC	2 cut(s)	276, 362
BlsI	GCNGC	2 cut(s)	277, 363
BmeT110I	CYCGRG	1 cut(s)	191
BmiI	GGNNCC	1 cut(s)	285
BmsI	GCATC	1 cut(s)	174
BpiI	GAAGAC	3 cut(s)	36, 444, 464
BsaBI	GATNNNNATC	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	1 cut(s)	293
Bse118I	RCCGGY	1 cut(s)	245
Bse1I	ACTGG	1 cut(s)	210
Bse3DI	GCAATG	1 cut(s)	378
Bse8I	GATNNNNATC	1 cut(s)	164
BseDI	CCNNGG	1 cut(s)	279
BseGI	GGATG	2 cut(s)	65, 417
BseJI	GATNNNNATC	1 cut(s)	164
BseLI	CCNNNNNNNGG	1 cut(s)	293
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	2 cut(s)	33, 267
BseNI	ACTGG	1 cut(s)	210
BseRI	GAGGAG	2 cut(s)	317, 356
BseXI	GCAGC	2 cut(s)	262, 348
BshFI	GGCC	3 cut(s)	64, 429, 521
BsiHKAI	GWGCWC	1 cut(s)	201
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	246
BslFI	GGGAC	1 cut(s)	495
BslI	CCNNNNNNNGG	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	495
BsnI	GGCC	3 cut(s)	64, 429, 521
BsoBI	CYCGRG	1 cut(s)	191
Bsp1286I	GDGCHC	2 cut(s)	201, 270
Bsp19I	CCATGG	1 cut(s)	279
BspACI	CCGC	1 cut(s)	213
BspANI	GGCC	3 cut(s)	64, 429, 521
BspCNI	CTCAG	2 cut(s)	34, 266
BspHI	TCATGA	1 cut(s)	345
BspLI	GGNNCC	1 cut(s)	285
BspQI	GCTCTTC	1 cut(s)	126
BsrDI	GCAATG	1 cut(s)	378
BsrFI	RCCGGY	1 cut(s)	245
BsrI	ACTGG	1 cut(s)	210
BssAI	RCCGGY	1 cut(s)	245
BssECI	CCNNGG	1 cut(s)	279
BssT1I	CCWWGG	1 cut(s)	279
Bst6I	CTCTTC	2 cut(s)	126, 473
BstC8I	GCNNGC	3 cut(s)	188, 211, 431
BstDEI	CTNAG	2 cut(s)	42, 253
BstDSI	CCRYGG	1 cut(s)	279
BstF5I	GGATG	2 cut(s)	65, 417
BstMWI	GCNNNNNNNGC	4 cut(s)	94, 196, 308, 487
BstV1I	GCAGC	2 cut(s)	262, 348
BstV2I	GAAGAC	3 cut(s)	36, 444, 464
BstXI	CCANNNNNNTGG	1 cut(s)	209
BsuRI	GGCC	3 cut(s)	64, 429, 521
BtgI	CCRYGG	1 cut(s)	279
BtsCI	GGATG	2 cut(s)	65, 417
BtsI	GCAGTG	1 cut(s)	141
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	3 cut(s)	188, 211, 431
CciI	TCATGA	1 cut(s)	345
Cfr10I	RCCGGY	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	216
CviAII	CATG	3 cut(s)	147, 280, 346
CviQI	GTAC	1 cut(s)	216
DdeI	CTNAG	2 cut(s)	42, 253
DraI	TTTAAA	1 cut(s)	261
EaeI	YGGCCR	2 cut(s)	62, 427
Eam1104I	CTCTTC	2 cut(s)	126, 473
EarI	CTCTTC	2 cut(s)	126, 473
Ecl136II	GAGCTC	1 cut(s)	199
Eco130I	CCWWGG	1 cut(s)	279
Eco147I	AGGCCT	1 cut(s)	521
Eco24I	GRGCYC	2 cut(s)	201, 270
Eco53kI	GAGCTC	1 cut(s)	199
Eco88I	CYCGRG	1 cut(s)	191
EcoICRI	GAGCTC	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	279
EcoT38I	GRGCYC	2 cut(s)	201, 270
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	3 cut(s)	150, 283, 349
FaiI	YATR	6 cut(s)	148, 281, 320, 347, 508, 535
FalI	AAGNNNNNCTT	1 cut(s)	509
FaqI	GGGAC	1 cut(s)	495
FatI	CATG	3 cut(s)	146, 279, 345
Fnu4HI	GCNGC	2 cut(s)	276, 362
FokI	GGATG	2 cut(s)	52, 404
FriOI	GRGCYC	2 cut(s)	201, 270
Fsp4HI	GCNGC	2 cut(s)	276, 362
FspBI	CTAG	2 cut(s)	312, 491
GluI	GCNGC	2 cut(s)	276, 362
HaeIII	GGCC	3 cut(s)	64, 429, 521
HapII	CCGG	1 cut(s)	246
Hin1II	CATG	3 cut(s)	150, 283, 349
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HindIII	AAGCTT	1 cut(s)	300
HpaII	CCGG	1 cut(s)	246
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	2 cut(s)	139, 406
Hpy188I	TCNGA	1 cut(s)	57
Hpy188III	TCNNGA	1 cut(s)	346
Hpy8I	GTNNAC	2 cut(s)	139, 406
HpyAV	CCTTC	1 cut(s)	350
HpyCH4V	TGCA	1 cut(s)	8
HpyF10VI	GCNNNNNNNGC	4 cut(s)	94, 196, 308, 487
HpyF3I	CTNAG	2 cut(s)	42, 253
Hsp92II	CATG	3 cut(s)	150, 283, 349
LguI	GCTCTTC	1 cut(s)	126
LmnI	GCTCC	6 cut(s)	94, 196, 204, 308, 330, 369
LpnPI	CCDG	6 cut(s)	172, 191, 195, 259, 443, 495
Lsp1109I	GCAGC	2 cut(s)	262, 348
LweI	GCATC	1 cut(s)	174
MaeI	CTAG	2 cut(s)	312, 491
MaeIII	GTNAC	3 cut(s)	82, 241, 493
MboII	GAAGA	6 cut(s)	41, 67, 113, 449, 460, 469
MhlI	GDGCHC	2 cut(s)	201, 270
MlsI	TGGCCA	2 cut(s)	64, 429
MluCI	AATT	2 cut(s)	22, 70
MluNI	TGGCCA	2 cut(s)	64, 429
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	5 cut(s)	135, 338, 377, 425, 476
Mox20I	TGGCCA	2 cut(s)	64, 429
MscI	TGGCCA	2 cut(s)	64, 429
MseI	TTAA	2 cut(s)	260, 516
MslI	CAYNNNNRTG	2 cut(s)	446, 505
Msp20I	TGGCCA	2 cut(s)	64, 429
MspI	CCGG	1 cut(s)	246
MwoI	GCNNNNNNNGC	4 cut(s)	94, 196, 308, 487
NcoI	CCATGG	1 cut(s)	279
NlaIII	CATG	3 cut(s)	150, 283, 349
NlaIV	GGNNCC	1 cut(s)	285
NmuCI	GTSAC	1 cut(s)	241
PagI	TCATGA	1 cut(s)	345
PceI	AGGCCT	1 cut(s)	521
PciSI	GCTCTTC	1 cut(s)	126
PkrI	GCNGC	2 cut(s)	277, 363
Psp124BI	GAGCTC	1 cut(s)	201
PspN4I	GGNNCC	1 cut(s)	285
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
RseI	CAYNNNNRTG	2 cut(s)	446, 505
SacI	GAGCTC	1 cut(s)	201
SapI	GCTCTTC	1 cut(s)	126
SaqAI	TTAA	2 cut(s)	260, 516
SatI	GCNGC	2 cut(s)	276, 362
SduI	GDGCHC	2 cut(s)	201, 270
SfaNI	GCATC	1 cut(s)	174
SmiMI	CAYNNNNRTG	2 cut(s)	446, 505
Sse9I	AATT	2 cut(s)	22, 70
SseBI	AGGCCT	1 cut(s)	521
SsiI	CCGC	1 cut(s)	213
SspMI	CTAG	2 cut(s)	312, 491
SstI	GAGCTC	1 cut(s)	201
StuI	AGGCCT	1 cut(s)	521
StyI	CCWWGG	1 cut(s)	279
TasI	AATT	2 cut(s)	22, 70
Tru1I	TTAA	2 cut(s)	260, 516
Tru9I	TTAA	2 cut(s)	260, 516
TscAI	CASTG	1 cut(s)	141
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	2 cut(s)	275, 361
Tsp45I	GTSAC	1 cut(s)	241
TspRI	CASTG	1 cut(s)	141
XapI	RAATTY	1 cut(s)	22
XspI	CTAG	2 cut(s)	312, 491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.