Rh7DG190200

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Forward (+)
17629403 .. 17630929
1527 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG190200.1

Sequence Viewer

Length: 1527 bp
ATGTCTGTAACAACATCACAAACACAAAACAGTCCAAGAGAGAGTGCCTCTCAACCATGTTCATTCGAACCTCTCAACCAAAAATGGCCGTCCAACTTCCTCAAGATCATGCTTTCAGAGCTCAAAATACAAAGAGGAATAGCTCTGCCTCTGGTGGTTATGAACTTGACATGGTTTGCCAAAATAGCCATCACAACAGCTTTTCTAGGAAGACTCGGAGAGCTTCAACTGGCTGGTGGCACACTTGGTTTCACTTTCGCTAATGTCACCGGCTTCTCCGTCTTGAGTGGTCTCTGTGGTGCCATGGAGCCCGTATGTGGTCAAGCATATGGAGCCAAAAACATTAGGCTTCTCCACAAGACCCTTCTTATGACAACTTTCTTGTTACTTCTTGCAACTCTTCCTATTTCATTTTTGTGGCTCAGTGTTGACAAAATCCTCACCCATTTTGGCCAACAAGAAGATATTTCAACAGTTGCAAAGACCTACCTTTTCTATCTCCTACCAGACTTGGTTATGACCGCACTGCTTTGTCCCCTCAAAGCCTACTTGAACTCACAAAGCATCACGGTTCCTTCCATGTTCTGCTCAGGTCTTGCTCTTGCCTTTCACATACCAATCAACATAGTGCTTGCAAACGCTAAAGGTATTGAGGGAGTTGCAATGTCTGTCTGGATCACTGACCTTATGGTTGTGATTCTACTTGCAATTTATGTGTGTGTGATTGAAGTTAAGGCAAAAGAAGGAAGGTGGAAAGAAGGCGGGTGGCTGGACCAAGGTGTTTGGGATTGGATTAGACTGCTCAAGCTTTGTGGACCTTGCTGCCTTACTACCTGCCTAGAATGGTGGTGCTATGAGATTCTGGTCCTGTTAACTGGCCGGCTTGCCAATGCCAAGCAGGCAGTCGGAGTCTTAGCCATCGTACTAAACTTCGACTACTTGCTGTACTCGGTGATGCTGTCTCTGGCAACATGTGCGTCGACTCGAGTCTCAAATGAGCTCGGAGCAAACAGGGCAGGACCTGCATACCAATCTGCATTTGTGTCTCTGGCAGTGAGTTTGGTCTCTGGTTGTTTAGGTGGATTGGTGATGGTAGCAGCCAGGGGAAGTTGGGGGTCATTGTTTAGCCACGATAAGGGGATTGTAAGAGGTGTGAAGAAGATGATGCTGCTTATGGCTGTGGTGGAGGTTGTGAATTTCCCATTAGCTGTTTGCGGAGGGATTGTTCGAGGAACAGCGAGGCCATGGTTGGCTATGTATGCAAATCTTGGTGGATTCTACCTTCTGGCTTTGCCCTTGGGAGTTGTTTTAGCCTTCAAGGTTAAACTCGGGCTGAGTGGACTATTAGTAGGATTCTTGATTGGGATGGTTGCTTGCTTGATTTTGTTGCTGATCTTTGTTTTAAGAATCAACTGGGATGAAGAAGCGTGCAAAGCACAAAGACTTGCCTCACTTTCCTGTCAAGCACCAGAACTTAACAAACACAAACACCACAAAAGCGTGGGGAGAGTCGATGCCGAAGTCTAA

Protein Analysis

508

Amino Acids

55.17

Weight (kDa)

8.96

Isoelectric Point (pI)

33.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 50 - 209 2.8e-31 MatE
MatE PF01554 273 - 435 1e-29 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 842, 1030
AccB1I GGYRCC 1 cut(s) 299
AccI GTMKAC 1 cut(s) 980
AciI CCGC 3 cut(s) 522, 762, 1215
AclWI GGATC 1 cut(s) 683
AcoI YGGCCR 3 cut(s) 86, 451, 877
AcsI RAATTY 1 cut(s) 1195
AfaI GTAC 2 cut(s) 924, 947
AfiI CCNNNNNNNGG 2 cut(s) 317, 1135
AflIII ACRYGT 1 cut(s) 971
AgsI TTSAA 5 cut(s) 227, 471, 553, 728, 1318
AjnI CCWGG 1 cut(s) 1100
AloI GAACNNNNNNTCC 2 cut(s) 1209, 1241
AluBI AGCT 7 cut(s) 121, 143, 200, 223, 808, 1000, 1208
AluI AGCT 7 cut(s) 121, 143, 200, 223, 808, 1000, 1208
Alw21I GWGCWC 2 cut(s) 123, 1002
Alw26I GTCTC 5 cut(s) 296, 966, 994, 1050, 1069
AlwI GGATC 1 cut(s) 683
AlwNI CAGNNNCTG 1 cut(s) 1022
Ama87I CYCGRG 2 cut(s) 984, 1328
AoxI GGCC 4 cut(s) 86, 451, 877, 1241
ApeKI GCWGC 3 cut(s) 822, 1097, 1168
ApoI RAATTY 1 cut(s) 1195
AspS9I GGNCC 4 cut(s) 772, 815, 865, 1019
AsuHPI GGTGA 4 cut(s) 259, 433, 964, 1099
AsuII TTCGAA 1 cut(s) 66
AvaI CYCGRG 2 cut(s) 984, 1328
AvaII GGWCC 4 cut(s) 772, 815, 865, 1019
BalI TGGCCA 1 cut(s) 453
BanI GGYRCC 1 cut(s) 299
BanII GRGCYC 3 cut(s) 123, 312, 1002
BbsI GAAGAC 1 cut(s) 217
Bbv12I GWGCWC 2 cut(s) 123, 1002
BbvI GCAGC 3 cut(s) 809, 1109, 1155
BccI CCATC 4 cut(s) 197, 926, 1084, 1360
BceAI ACGGC 1 cut(s) 73
BciT130I CCWGG 1 cut(s) 1102
BcoDI GTCTC 5 cut(s) 296, 966, 994, 1050, 1069
BfaI CTAG 2 cut(s) 206, 839
BfuAI ACCTGC 2 cut(s) 842, 1030
BglI GCCNNNNNGGC 1 cut(s) 899
BisI GCNGC 3 cut(s) 823, 1098, 1169
BlsI GCNGC 3 cut(s) 824, 1099, 1170
Bme1390I CCNGG 1 cut(s) 1102
Bme18I GGWCC 4 cut(s) 772, 815, 865, 1019
BmeT110I CYCGRG 2 cut(s) 984, 1328
BmgT120I GGNCC 4 cut(s) 772, 815, 865, 1019
BmiI GGNNCC 4 cut(s) 301, 309, 334, 573
BmrFI CCNGG 1 cut(s) 1102
BmrI ACTGGG 1 cut(s) 1423
BmsI GCATC 4 cut(s) 573, 945, 1155, 1504
BmuI ACTGGG 1 cut(s) 1423
BoxI GACNNNNGTC 1 cut(s) 986
BpiI GAAGAC 1 cut(s) 217
BplI GAGNNNNNCTC 4 cut(s) 32, 64, 34, 66
Bpu10I CCTNAGC 1 cut(s) 589
Bpu14I TTCGAA 1 cut(s) 66
BpuEI CTTGAG 3 cut(s) 86, 304, 788
BsaI GGTCTC 2 cut(s) 296, 1069
BsaJI CCNNGG 5 cut(s) 303, 775, 1101, 1244, 1296
BsaXI ACNNNNNCTCC 2 cut(s) 1209, 1239
Bsc4I CCNNNNNNNGG 2 cut(s) 317, 1135
Bse118I RCCGGY 2 cut(s) 269, 879
Bse1I ACTGG 3 cut(s) 234, 880, 1418
Bse3DI GCAATG 1 cut(s) 669
BseBI CCWGG 1 cut(s) 1102
BseDI CCNNGG 5 cut(s) 303, 775, 1101, 1244, 1296
BseGI GGATG 2 cut(s) 1371, 1423
BseLI CCNNNNNNNGG 2 cut(s) 317, 1135
BseMI GCAATG 1 cut(s) 669
BseMII CTCAG 3 cut(s) 436, 603, 1325
BseNI ACTGG 3 cut(s) 234, 880, 1418
BseXI GCAGC 3 cut(s) 809, 1109, 1155
BshFI GGCC 4 cut(s) 88, 453, 879, 1243
BshNI GGYRCC 1 cut(s) 299
BsiHKAI GWGCWC 2 cut(s) 123, 1002
BsiHKCI CYCGRG 2 cut(s) 984, 1328
BsiSI CCGG 2 cut(s) 270, 880
BslFI GGGAC 1 cut(s) 519
BslI CCNNNNNNNGG 2 cut(s) 317, 1135
BsmAI GTCTC 5 cut(s) 296, 966, 994, 1050, 1069
BsmFI GGGAC 1 cut(s) 519
BsnI GGCC 4 cut(s) 88, 453, 879, 1243
Bso31I GGTCTC 2 cut(s) 296, 1069
BsoBI CYCGRG 2 cut(s) 984, 1328
Bsp119I TTCGAA 1 cut(s) 66
Bsp1286I GDGCHC 3 cut(s) 123, 312, 1002
Bsp143I GATC 3 cut(s) 105, 675, 1392
Bsp19I CCATGG 2 cut(s) 303, 1244
BspACI CCGC 3 cut(s) 522, 762, 1215
BspANI GGCC 4 cut(s) 88, 453, 879, 1243
BspCNI CTCAG 3 cut(s) 435, 602, 1326
BspLI GGNNCC 4 cut(s) 301, 309, 334, 573
BspMI ACCTGC 2 cut(s) 842, 1030
BspPI GGATC 1 cut(s) 683
BspT104I TTCGAA 1 cut(s) 66
BspT107I GGYRCC 1 cut(s) 299
BspTNI GGTCTC 2 cut(s) 296, 1069
BsrDI GCAATG 1 cut(s) 669
BsrFI RCCGGY 2 cut(s) 269, 879
BsrI ACTGG 3 cut(s) 234, 880, 1418
BssAI RCCGGY 2 cut(s) 269, 879
BssECI CCNNGG 5 cut(s) 303, 775, 1101, 1244, 1296
BssMI GATC 3 cut(s) 105, 675, 1392
BssT1I CCWWGG 4 cut(s) 303, 775, 1244, 1296
Bst2UI CCWGG 1 cut(s) 1102
Bst4CI ACNGT 3 cut(s) 32, 475, 571
Bst6I CTCTTC 1 cut(s) 405
BstAPI GCANNNNNTGC 2 cut(s) 974, 1022
BstBI TTCGAA 1 cut(s) 66
BstC8I GCNNGC 6 cut(s) 633, 881, 885, 900, 1375, 1429
BstDEI CTNAG 4 cut(s) 422, 589, 913, 1334
BstDSI CCRYGG 2 cut(s) 303, 1244
BstF5I GGATG 2 cut(s) 1371, 1423
BstKTI GATC 3 cut(s) 108, 678, 1395
BstMAI GTCTC 5 cut(s) 296, 966, 994, 1050, 1069
BstMBI GATC 3 cut(s) 105, 675, 1392
BstMWI GCNNNNNNNGC 9 cut(s) 118, 185, 332, 899, 974, 1013, 1022, 1259, 1433
BstNI CCWGG 1 cut(s) 1102
BstNSI RCATGY 1 cut(s) 975
BstPAI GACNNNNGTC 1 cut(s) 986
BstSCI CCNGG 1 cut(s) 1100
BstV1I GCAGC 3 cut(s) 809, 1109, 1155
BstV2I GAAGAC 1 cut(s) 217
BsuRI GGCC 4 cut(s) 88, 453, 879, 1243
BtgI CCRYGG 2 cut(s) 303, 1244
BtsCI GGATG 2 cut(s) 1371, 1423
BtsI GCAGTG 2 cut(s) 524, 1059
BtsIMutI CAGTG 4 cut(s) 430, 524, 678, 1059
BveI ACCTGC 2 cut(s) 842, 1030
Cac8I GCNNGC 6 cut(s) 633, 881, 885, 900, 1375, 1429
CaiI CAGNNNCTG 1 cut(s) 1022
Cfr10I RCCGGY 2 cut(s) 269, 879
Cfr13I GGNCC 4 cut(s) 772, 815, 865, 1019
CseI GACGC 1 cut(s) 966
Csp6I GTAC 2 cut(s) 923, 946
CspCI CAANNNNNGTGG 2 cut(s) 793, 828
CviAII CATG 7 cut(s) 57, 109, 171, 304, 580, 972, 1245
CviQI GTAC 2 cut(s) 923, 946
DdeI CTNAG 4 cut(s) 422, 589, 913, 1334
DpnI GATC 3 cut(s) 107, 677, 1394
DpnII GATC 3 cut(s) 105, 675, 1392
EaeI YGGCCR 3 cut(s) 86, 451, 877
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Ecl136II GAGCTC 2 cut(s) 121, 1000
Eco130I CCWWGG 4 cut(s) 303, 775, 1244, 1296
Eco24I GRGCYC 3 cut(s) 123, 312, 1002
Eco31I GGTCTC 2 cut(s) 296, 1069
Eco47I GGWCC 4 cut(s) 772, 815, 865, 1019
Eco53kI GAGCTC 2 cut(s) 121, 1000
Eco88I CYCGRG 2 cut(s) 984, 1328
EcoICRI GAGCTC 2 cut(s) 121, 1000
EcoO109I RGGNCCY 1 cut(s) 1019
EcoRII CCWGG 1 cut(s) 1100
EcoT14I CCWWGG 4 cut(s) 303, 775, 1244, 1296
EcoT38I GRGCYC 3 cut(s) 123, 312, 1002
ErhI CCWWGG 4 cut(s) 303, 775, 1244, 1296
FaeI CATG 7 cut(s) 60, 112, 174, 307, 583, 975, 1248
FaqI GGGAC 1 cut(s) 519
FatI CATG 7 cut(s) 56, 108, 170, 303, 579, 971, 1244
FauI CCCGC 1 cut(s) 755
FauNDI CATATG 1 cut(s) 328
FblI GTMKAC 1 cut(s) 980
Fnu4HI GCNGC 3 cut(s) 823, 1098, 1169
FokI GGATG 2 cut(s) 1378, 1430
FriOI GRGCYC 3 cut(s) 123, 312, 1002
Fsp4HI GCNGC 3 cut(s) 823, 1098, 1169
FspBI CTAG 2 cut(s) 206, 839
GluI GCNGC 3 cut(s) 823, 1098, 1169
HaeIII GGCC 4 cut(s) 88, 453, 879, 1243
HapII CCGG 2 cut(s) 270, 880
HgaI GACGC 1 cut(s) 966
Hin1II CATG 7 cut(s) 60, 112, 174, 307, 583, 975, 1248
HincII GTYRAC 3 cut(s) 430, 873, 981
HindII GTYRAC 3 cut(s) 430, 873, 981
HindIII AAGCTT 1 cut(s) 806
HpaI GTTAAC 1 cut(s) 873
HpaII CCGG 2 cut(s) 270, 880
HphI GGTGA 4 cut(s) 259, 433, 964, 1099
Hpy166II GTNNAC 5 cut(s) 430, 815, 873, 981, 1340
Hpy188I TCNGA 4 cut(s) 118, 218, 908, 1004
Hpy188III TCNNGA 4 cut(s) 103, 283, 673, 1357
Hpy8I GTNNAC 5 cut(s) 430, 815, 873, 981, 1340
Hpy99I CGWCG 1 cut(s) 982
HpyAV CCTTC 7 cut(s) 374, 585, 737, 741, 752, 1292, 1324
HpyCH4III ACNGT 3 cut(s) 32, 475, 571
HpyCH4V TGCA 9 cut(s) 395, 479, 635, 662, 707, 1025, 1037, 1262, 1431
HpyF10VI GCNNNNNNNGC 9 cut(s) 118, 185, 332, 899, 974, 1013, 1022, 1259, 1433
HpyF3I CTNAG 4 cut(s) 422, 589, 913, 1334
Hsp92II CATG 7 cut(s) 60, 112, 174, 307, 583, 975, 1248
KroI GCCGGC 1 cut(s) 879
KroNI GCCGGC 1 cut(s) 881
KspAI GTTAAC 1 cut(s) 873
Kzo9I GATC 3 cut(s) 105, 675, 1392
LmnI GCTCC 3 cut(s) 307, 332, 1004
Lsp1109I GCAGC 3 cut(s) 809, 1109, 1155
LweI GCATC 4 cut(s) 573, 945, 1155, 1504
MaeI CTAG 2 cut(s) 206, 839
MaeIII GTNAC 3 cut(s) 7, 265, 384
MalI GATC 3 cut(s) 107, 677, 1394
MboI GATC 3 cut(s) 105, 675, 1392
MboII GAAGA 6 cut(s) 222, 392, 473, 1168, 1171, 1433
MhlI GDGCHC 3 cut(s) 123, 312, 1002
MlsI TGGCCA 1 cut(s) 453
MluCI AATT 2 cut(s) 708, 1195
MluNI TGGCCA 1 cut(s) 453
MlyI GAGTC 5 cut(s) 207, 918, 976, 996, 1518
MmeI TCCRAC 2 cut(s) 117, 886
Mox20I TGGCCA 1 cut(s) 453
MroNI GCCGGC 1 cut(s) 879
MscI TGGCCA 1 cut(s) 453
MseI TTAA 5 cut(s) 732, 872, 1323, 1403, 1476
MslI CAYNNNNRTG 1 cut(s) 415
Msp20I TGGCCA 1 cut(s) 453
MspI CCGG 2 cut(s) 270, 880
MspR9I CCNGG 1 cut(s) 1102
MvaI CCWGG 1 cut(s) 1102
MwoI GCNNNNNNNGC 9 cut(s) 118, 185, 332, 899, 974, 1013, 1022, 1259, 1433
NaeI GCCGGC 1 cut(s) 881
NcoI CCATGG 2 cut(s) 303, 1244
NdeI CATATG 1 cut(s) 328
NdeII GATC 3 cut(s) 105, 675, 1392
NgoMIV GCCGGC 1 cut(s) 879
NlaIII CATG 7 cut(s) 60, 112, 174, 307, 583, 975, 1248
NlaIV GGNNCC 4 cut(s) 301, 309, 334, 573
NmuCI GTSAC 1 cut(s) 265
NspI RCATGY 1 cut(s) 975
NspV TTCGAA 1 cut(s) 66
PaeR7I CTCGAG 1 cut(s) 984
PciI ACATGT 1 cut(s) 971
PdiI GCCGGC 1 cut(s) 881
PfeI GAWTC 5 cut(s) 697, 859, 1275, 1353, 1407
PkrI GCNGC 3 cut(s) 824, 1099, 1170
PleI GAGTC 5 cut(s) 207, 917, 976, 995, 1517
PpsI GAGTC 5 cut(s) 207, 917, 976, 995, 1517
PpuMI RGGWCCY 1 cut(s) 1019
PscI ACATGT 1 cut(s) 971
PshAI GACNNNNGTC 1 cut(s) 986
Psp124BI GAGCTC 2 cut(s) 123, 1002
Psp5II RGGWCCY 1 cut(s) 1019
Psp6I CCWGG 1 cut(s) 1100
PspGI CCWGG 1 cut(s) 1100
PspN4I GGNNCC 4 cut(s) 301, 309, 334, 573
PspPI GGNCC 4 cut(s) 772, 815, 865, 1019
PspPPI RGGWCCY 1 cut(s) 1019
PspXI VCTCGAGB 1 cut(s) 984
PstNI CAGNNNCTG 1 cut(s) 1022
RsaI GTAC 2 cut(s) 924, 947
RsaNI GTAC 2 cut(s) 923, 946
RseI CAYNNNNRTG 1 cut(s) 415
SacI GAGCTC 2 cut(s) 123, 1002
SalI GTCGAC 1 cut(s) 979
SaqAI TTAA 5 cut(s) 732, 872, 1323, 1403, 1476
SatI GCNGC 3 cut(s) 823, 1098, 1169
Sau3AI GATC 3 cut(s) 105, 675, 1392
Sau96I GGNCC 4 cut(s) 772, 815, 865, 1019
SchI GAGTC 5 cut(s) 207, 918, 976, 996, 1518
ScrFI CCNGG 1 cut(s) 1102
SduI GDGCHC 3 cut(s) 123, 312, 1002
SfaNI GCATC 4 cut(s) 573, 945, 1155, 1504
Sfr274I CTCGAG 1 cut(s) 984
SfuI TTCGAA 1 cut(s) 66
SinI GGWCC 4 cut(s) 772, 815, 865, 1019
SlaI CTCGAG 1 cut(s) 984
SmiMI CAYNNNNRTG 1 cut(s) 415
SmlI CTYRAG 4 cut(s) 101, 283, 803, 984
SmoI CTYRAG 4 cut(s) 101, 283, 803, 984
Sse9I AATT 2 cut(s) 708, 1195
SsiI CCGC 3 cut(s) 522, 762, 1215
SspMI CTAG 2 cut(s) 206, 839
SstI GAGCTC 2 cut(s) 123, 1002
StyD4I CCNGG 1 cut(s) 1100
StyI CCWWGG 4 cut(s) 303, 775, 1244, 1296
TaaI ACNGT 3 cut(s) 32, 475, 571
TaqI TCGA 6 cut(s) 66, 933, 980, 985, 1228, 1512
TasI AATT 2 cut(s) 708, 1195
TatI WGTACW 1 cut(s) 945
TfiI GAWTC 5 cut(s) 697, 859, 1275, 1353, 1407
Tru1I TTAA 5 cut(s) 732, 872, 1323, 1403, 1476
Tru9I TTAA 5 cut(s) 732, 872, 1323, 1403, 1476
TscAI CASTG 4 cut(s) 430, 531, 685, 1059
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 3 cut(s) 822, 1097, 1168
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 4 cut(s) 51, 176, 399, 1434
TspGWI ACGGA 1 cut(s) 268
TspRI CASTG 4 cut(s) 430, 531, 685, 1059
VpaK11BI GGWCC 4 cut(s) 772, 815, 865, 1019
XapI RAATTY 1 cut(s) 1195
XceI RCATGY 1 cut(s) 975
XhoI CTCGAG 1 cut(s) 984
XmiI GTMKAC 1 cut(s) 980
XspI CTAG 2 cut(s) 206, 839
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.