MD17G1137500.v1.1

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
12328143 .. 12329594
1452 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1137500.v1.1.491

Sequence Viewer

Length: 1452 bp
ATGTCTGCAACAACAATATCAAATTTGGAAGATAACCCAATTGAGAAAACCTTTCAGAAATTGCCATCCAATTTCTTCAAGGTTACGCTTTTGGAGCTGAAAATACAAAGGGCAATAGCTCTTCCTCTTGTGGCAGTGAACTTGACATGGTTTGCCAAGATAGGCATCACAACAGTTTTTCTTGGCAGGCTCGGGGAGCTCCAACTGGCTGGCGGTACGCTTGGCTTCACCTTTGCTAATGTCACCGGCTTCTCAGTTTTAAATGGGCTTTGTGCTGCCATGGAACCTATTTGTGGTCAAGCTTTTGGAGCTAGAAATATAAAGCTCCTCCACAAAGCCCTTCTCATGACAACTTTCTTGCTGCTCCTCGCAACGCTTCCTATTTCGTTCTTGTGGCTCAATGTTGACAAAATCCTCATCCATTTTGGCCAACAAGAAGACATTTCAATGGTTGCGAAGACCTACCTCTTCTATCTCCTGCCAGACTTGGTAGTTACTTCACTCTTATGTCCTTTTAAGGCCTACTTGAACTCACAAGGCATCACAGTGCCATCAATGTTCTGCTCGGGTCTAGCGTTTGCTTTTCACATACCGATTAACATCTTTCTTGCGAAAGCCAAGGGTCTCAAGGGTGTTGCAATGTCTGTGTGGATCACTGATCTCATGGTTGTGGTTCTACTTGCCTTGTATACATGTGTCATTGAAATTAAGGCAAAGGAAGGGAGGTGGAGGGAAGGGGGTTGGCTTGATCAACATGTCAGCGATTGGAAAAGGTTGCTCAAGCTTTGTGGACCTTGCTGCCTCACTACCTGCCTTGAATGGTGGTGCTATGAGATATTGATGTTGCTCACAGGCCGACTTGCGAATGCCAAGGAGGCAGTGGGAGTATTAGCAATTGTGTTAAACTTCGACTATCTGCTTTACTCGGTGATGCTTTCTTTGGCAACTTGTGCATCAACCCGCGTCTCCAACGAGCTTGGAGCAAACAGAGCAGGCCCTGCTTATCAGTCTGCATTTGTGTCTGTTGCAGTGAGTGTGGTCTCGGGTTTCATAGGTGGTTTGGTAATGTTAGGAGCCAGGGGAAGTTGGGGGTGTTTGTTCACTCATGACAAAGGAATTTTAGAAGGTGTGAAGAAGATGATGCTGCTGATGGCTTTAGTCGAGGTGGTGAATTTCCCTTTAACAGTTTGTGGAGGGATTGTCCGGGGAACGGCGCGACCGTGGTTAGCCATGTACGCAAATCTTGGTGGGTTTTACCTCCTGGCCTTGCCCTTGGGAGTTATCTTAGCCTTCAAGATTGCACTTGGGCTCAGTGGATTGATGGTAGGGTTCTTAATTGGAATGATTGCATGCTTGATTTTGTTGCTAATTTTTGTTTTGAGGATCAATTGGGAAGAAGAAGGTTGGAAGGCACAAACACTTGCTTCCGTTGGTTGTCAAGCACCAGAATAA

Protein Analysis

484

Amino Acids

52.61

Weight (kDa)

8.74

Isoelectric Point (pI)

31.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 56 - 201 1.7e-31 MatE
MatE PF01554 265 - 428 1.1e-29 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 818
AccI GTMKAC 1 cut(s) 689
AccII CGCG 2 cut(s) 963, 1216
AciI CCGC 2 cut(s) 213, 961
AclWI GGATC 2 cut(s) 659, 1391
AcoI YGGCCR 1 cut(s) 427
AcsI RAATTY 3 cut(s) 22, 1116, 1171
AfaI GTAC 2 cut(s) 217, 1235
AfiI CCNNNNNNNGG 2 cut(s) 293, 1210
AflIII ACRYGT 2 cut(s) 692, 754
AgsI TTSAA 6 cut(s) 79, 447, 529, 704, 818, 1294
AjnI CCWGG 2 cut(s) 1076, 1260
AluBI AGCT 8 cut(s) 97, 119, 199, 302, 311, 325, 784, 976
AluI AGCT 8 cut(s) 97, 119, 199, 302, 311, 325, 784, 976
Alw21I GWGCWC 1 cut(s) 201
Alw26I GTCTC 3 cut(s) 629, 970, 1045
AlwI GGATC 2 cut(s) 659, 1391
AlwNI CAGNNNCTG 1 cut(s) 998
Ama87I CYCGRG 3 cut(s) 191, 565, 1042
AoxI GGCC 5 cut(s) 427, 519, 853, 994, 1263
ApeKI GCWGC 4 cut(s) 275, 361, 798, 1144
ApoI RAATTY 3 cut(s) 22, 1116, 1171
AspLEI GCGC 1 cut(s) 1216
AspS9I GGNCC 2 cut(s) 791, 995
AsuC2I CCSGG 1 cut(s) 1205
AsuHPI GGTGA 4 cut(s) 220, 235, 940, 1180
AvaI CYCGRG 3 cut(s) 191, 565, 1042
AvaII GGWCC 1 cut(s) 791
BalI TGGCCA 1 cut(s) 429
BanII GRGCYC 2 cut(s) 201, 1311
BbsI GAAGAC 2 cut(s) 444, 464
Bbv12I GWGCWC 1 cut(s) 201
BbvI GCAGC 4 cut(s) 262, 348, 785, 1131
BccI CCATC 4 cut(s) 73, 559, 1144, 1315
BceAI ACGGC 1 cut(s) 1227
BciT130I CCWGG 2 cut(s) 1078, 1262
BclI TGATCA 1 cut(s) 748
BcnI CCSGG 1 cut(s) 1205
BcoDI GTCTC 3 cut(s) 629, 970, 1045
BfaI CTAG 2 cut(s) 312, 572
BfuAI ACCTGC 1 cut(s) 818
BglI GCCNNNNNGGC 1 cut(s) 875
BisI GCNGC 4 cut(s) 276, 362, 799, 1145
BlsI GCNGC 4 cut(s) 277, 363, 800, 1146
Bme1390I CCNGG 3 cut(s) 1078, 1205, 1262
Bme18I GGWCC 1 cut(s) 791
BmeT110I CYCGRG 3 cut(s) 191, 565, 1042
BmgT120I GGNCC 2 cut(s) 791, 995
BmiI GGNNCC 2 cut(s) 285, 1075
BmrFI CCNGG 3 cut(s) 1078, 1205, 1262
BmsI GCATC 5 cut(s) 174, 549, 921, 962, 1131
BpiI GAAGAC 2 cut(s) 444, 464
BpuEI CTTGAG 2 cut(s) 611, 764
BpuMI CCSGG 1 cut(s) 1205
BsaBI GATNNNNATC 2 cut(s) 164, 599
BsaI GGTCTC 2 cut(s) 629, 1045
BsaJI CCNNGG 7 cut(s) 279, 618, 870, 1077, 1204, 1220, 1272
BsaXI ACNNNNNCTCC 2 cut(s) 1185, 1215
Bsc4I CCNNNNNNNGG 2 cut(s) 293, 1210
Bse118I RCCGGY 1 cut(s) 245
Bse1I ACTGG 1 cut(s) 210
Bse3DI GCAATG 1 cut(s) 645
Bse8I GATNNNNATC 2 cut(s) 164, 599
BseBI CCWGG 2 cut(s) 1078, 1262
BseDI CCNNGG 7 cut(s) 279, 618, 870, 1077, 1204, 1220, 1272
BseGI GGATG 2 cut(s) 65, 417
BseJI GATNNNNATC 2 cut(s) 164, 599
BseLI CCNNNNNNNGG 2 cut(s) 293, 1210
BseMI GCAATG 1 cut(s) 645
BseMII CTCAG 2 cut(s) 267, 1324
BseNI ACTGG 1 cut(s) 210
BseRI GAGGAG 2 cut(s) 317, 356
BseXI GCAGC 4 cut(s) 262, 348, 785, 1131
Bsh1236I CGCG 2 cut(s) 963, 1216
Bsh1285I CGRYCG 1 cut(s) 1220
BshFI GGCC 5 cut(s) 429, 521, 855, 996, 1265
BsiEI CGRYCG 1 cut(s) 1220
BsiHKAI GWGCWC 1 cut(s) 201
BsiHKCI CYCGRG 3 cut(s) 191, 565, 1042
BsiSI CCGG 2 cut(s) 246, 1204
BslI CCNNNNNNNGG 2 cut(s) 293, 1210
BsmAI GTCTC 3 cut(s) 629, 970, 1045
BsmBI CGTCTC 1 cut(s) 970
BsmI GAATGC 1 cut(s) 871
BsnI GGCC 5 cut(s) 429, 521, 855, 996, 1265
Bso31I GGTCTC 2 cut(s) 629, 1045
BsoBI CYCGRG 3 cut(s) 191, 565, 1042
Bsp1286I GDGCHC 2 cut(s) 201, 1311
Bsp143I GATC 4 cut(s) 651, 658, 748, 1383
Bsp19I CCATGG 1 cut(s) 279
BspACI CCGC 2 cut(s) 213, 961
BspANI GGCC 5 cut(s) 429, 521, 855, 996, 1265
BspCNI CTCAG 2 cut(s) 266, 1323
BspFNI CGCG 2 cut(s) 963, 1216
BspHI TCATGA 2 cut(s) 345, 1105
BspLI GGNNCC 2 cut(s) 285, 1075
BspMI ACCTGC 1 cut(s) 818
BspPI GGATC 2 cut(s) 659, 1391
BspQI GCTCTTC 1 cut(s) 126
BspTNI GGTCTC 2 cut(s) 629, 1045
BsrDI GCAATG 1 cut(s) 645
BsrFI RCCGGY 1 cut(s) 245
BsrI ACTGG 1 cut(s) 210
BssAI RCCGGY 1 cut(s) 245
BssECI CCNNGG 7 cut(s) 279, 618, 870, 1077, 1204, 1220, 1272
BssMI GATC 4 cut(s) 651, 658, 748, 1383
BssNAI GTATAC 1 cut(s) 690
BssT1I CCWWGG 4 cut(s) 279, 618, 870, 1272
Bst1107I GTATAC 1 cut(s) 690
Bst2UI CCWGG 2 cut(s) 1078, 1262
Bst4CI ACNGT 4 cut(s) 175, 547, 1186, 1221
Bst6I CTCTTC 2 cut(s) 126, 473
BstAPI GCANNNNNTGC 2 cut(s) 950, 998
BstC8I GCNNGC 4 cut(s) 188, 211, 994, 1351
BstDEI CTNAG 3 cut(s) 253, 1285, 1310
BstDSI CCRYGG 2 cut(s) 279, 1220
BstF5I GGATG 2 cut(s) 65, 417
BstFNI CGCG 2 cut(s) 963, 1216
BstHHI GCGC 1 cut(s) 1216
BstKTI GATC 4 cut(s) 654, 661, 751, 1386
BstMAI GTCTC 3 cut(s) 629, 970, 1045
BstMBI GATC 4 cut(s) 651, 658, 748, 1383
BstMCI CGRYCG 1 cut(s) 1220
BstMWI GCNNNNNNNGC 8 cut(s) 94, 196, 308, 875, 950, 989, 998, 1235
BstNI CCWGG 2 cut(s) 1078, 1262
BstNSI RCATGY 3 cut(s) 696, 758, 1353
BstSCI CCNGG 3 cut(s) 1076, 1203, 1260
BstUI CGCG 2 cut(s) 963, 1216
BstV1I GCAGC 4 cut(s) 262, 348, 785, 1131
BstV2I GAAGAC 2 cut(s) 444, 464
BstXI CCANNNNNNTGG 1 cut(s) 209
BstZ17I GTATAC 1 cut(s) 690
BsuRI GGCC 5 cut(s) 429, 521, 855, 996, 1265
BtgI CCRYGG 2 cut(s) 279, 1220
BtsCI GGATG 2 cut(s) 65, 417
BtsI GCAGTG 3 cut(s) 141, 885, 1035
BtsIMutI CAGTG 6 cut(s) 141, 552, 654, 885, 1035, 1318
BveI ACCTGC 1 cut(s) 818
Cac8I GCNNGC 4 cut(s) 188, 211, 994, 1351
CaiI CAGNNNCTG 1 cut(s) 998
CciI TCATGA 2 cut(s) 345, 1105
CfoI GCGC 1 cut(s) 1216
Cfr10I RCCGGY 1 cut(s) 245
Cfr13I GGNCC 2 cut(s) 791, 995
CseI GACGC 1 cut(s) 952
Csp6I GTAC 2 cut(s) 216, 1234
CspCI CAANNNNNGTGG 2 cut(s) 769, 804
CviAII CATG 9 cut(s) 147, 280, 346, 664, 693, 755, 1106, 1231, 1350
CviQI GTAC 2 cut(s) 216, 1234
DdeI CTNAG 3 cut(s) 253, 1285, 1310
DpnI GATC 4 cut(s) 653, 660, 750, 1385
DpnII GATC 4 cut(s) 651, 658, 748, 1383
DraI TTTAAA 1 cut(s) 261
EaeI YGGCCR 1 cut(s) 427
Eam1104I CTCTTC 2 cut(s) 126, 473
EarI CTCTTC 2 cut(s) 126, 473
Ecl136II GAGCTC 1 cut(s) 199
Eco130I CCWWGG 4 cut(s) 279, 618, 870, 1272
Eco147I AGGCCT 1 cut(s) 521
Eco24I GRGCYC 2 cut(s) 201, 1311
Eco31I GGTCTC 2 cut(s) 629, 1045
Eco47I GGWCC 1 cut(s) 791
Eco53kI GAGCTC 1 cut(s) 199
Eco88I CYCGRG 3 cut(s) 191, 565, 1042
EcoICRI GAGCTC 1 cut(s) 199
EcoO109I RGGNCCY 1 cut(s) 995
EcoRII CCWGG 2 cut(s) 1076, 1260
EcoT14I CCWWGG 4 cut(s) 279, 618, 870, 1272
EcoT38I GRGCYC 2 cut(s) 201, 1311
ErhI CCWWGG 4 cut(s) 279, 618, 870, 1272
Esp3I CGTCTC 1 cut(s) 970
FaeI CATG 9 cut(s) 150, 283, 349, 667, 696, 758, 1109, 1234, 1353
FalI AAGNNNNNCTT 2 cut(s) 509, 541
FatI CATG 9 cut(s) 146, 279, 345, 663, 692, 754, 1105, 1230, 1349
FauI CCCGC 1 cut(s) 968
FbaI TGATCA 1 cut(s) 748
FblI GTMKAC 1 cut(s) 689
Fnu4HI GCNGC 4 cut(s) 276, 362, 799, 1145
FokI GGATG 2 cut(s) 52, 404
FriOI GRGCYC 2 cut(s) 201, 1311
Fsp4HI GCNGC 4 cut(s) 276, 362, 799, 1145
FspBI CTAG 2 cut(s) 312, 572
GlaI GCGC 1 cut(s) 1215
GluI GCNGC 4 cut(s) 276, 362, 799, 1145
HaeIII GGCC 5 cut(s) 429, 521, 855, 996, 1265
HapII CCGG 2 cut(s) 246, 1204
HgaI GACGC 1 cut(s) 952
HhaI GCGC 1 cut(s) 1216
Hin1II CATG 9 cut(s) 150, 283, 349, 667, 696, 758, 1109, 1234, 1353
Hin6I GCGC 1 cut(s) 1214
HinP1I GCGC 1 cut(s) 1214
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HindIII AAGCTT 2 cut(s) 300, 782
HpaII CCGG 2 cut(s) 246, 1204
HphI GGTGA 4 cut(s) 220, 235, 940, 1180
Hpy166II GTNNAC 5 cut(s) 139, 406, 690, 791, 1101
Hpy188I TCNGA 1 cut(s) 57
Hpy188III TCNNGA 3 cut(s) 346, 1106, 1294
Hpy8I GTNNAC 5 cut(s) 139, 406, 690, 791, 1101
HpyAV CCTTC 7 cut(s) 350, 713, 728, 1118, 1300, 1394, 1402
HpyCH4III ACNGT 4 cut(s) 175, 547, 1186, 1221
HpyCH4V TGCA 7 cut(s) 8, 638, 953, 1013, 1028, 1301, 1349
HpyF10VI GCNNNNNNNGC 8 cut(s) 94, 196, 308, 875, 950, 989, 998, 1235
HpyF3I CTNAG 3 cut(s) 253, 1285, 1310
Hsp92II CATG 9 cut(s) 150, 283, 349, 667, 696, 758, 1109, 1234, 1353
HspAI GCGC 1 cut(s) 1214
Ksp22I TGATCA 1 cut(s) 748
Kzo9I GATC 4 cut(s) 651, 658, 748, 1383
LguI GCTCTTC 1 cut(s) 126
LmnI GCTCC 8 cut(s) 94, 196, 204, 308, 330, 369, 980, 1073
Lsp1109I GCAGC 4 cut(s) 262, 348, 785, 1131
LweI GCATC 5 cut(s) 174, 549, 921, 962, 1131
MaeI CTAG 2 cut(s) 312, 572
MaeIII GTNAC 3 cut(s) 82, 241, 493
MalI GATC 4 cut(s) 653, 660, 750, 1385
MboI GATC 4 cut(s) 651, 658, 748, 1383
MfeI CAATTG 3 cut(s) 39, 894, 1387
MhlI GDGCHC 2 cut(s) 201, 1311
MlsI TGGCCA 1 cut(s) 429
MluNI TGGCCA 1 cut(s) 429
MmeI TCCRAC 3 cut(s) 226, 993, 1385
Mox20I TGGCCA 1 cut(s) 429
MscI TGGCCA 1 cut(s) 429
MseI TTAA 7 cut(s) 260, 516, 597, 708, 902, 1181, 1334
MslI CAYNNNNRTG 4 cut(s) 446, 505, 545, 668
Msp20I TGGCCA 1 cut(s) 429
MspI CCGG 2 cut(s) 246, 1204
MspR9I CCNGG 3 cut(s) 1078, 1205, 1262
MunI CAATTG 3 cut(s) 39, 894, 1387
Mva1269I GAATGC 1 cut(s) 871
MvaI CCWGG 2 cut(s) 1078, 1262
MvnI CGCG 2 cut(s) 963, 1216
MwoI GCNNNNNNNGC 8 cut(s) 94, 196, 308, 875, 950, 989, 998, 1235
NciI CCSGG 1 cut(s) 1205
NcoI CCATGG 1 cut(s) 279
NdeII GATC 4 cut(s) 651, 658, 748, 1383
NlaIII CATG 9 cut(s) 150, 283, 349, 667, 696, 758, 1109, 1234, 1353
NlaIV GGNNCC 2 cut(s) 285, 1075
NmuCI GTSAC 1 cut(s) 241
NspI RCATGY 3 cut(s) 696, 758, 1353
PaeI GCATGC 1 cut(s) 1353
PagI TCATGA 2 cut(s) 345, 1105
PceI AGGCCT 1 cut(s) 521
PciI ACATGT 2 cut(s) 692, 754
PciSI GCTCTTC 1 cut(s) 126
PcsI WCGNNNNNNNCGW 2 cut(s) 572, 1217
PctI GAATGC 1 cut(s) 871
PkrI GCNGC 4 cut(s) 277, 363, 800, 1146
PscI ACATGT 2 cut(s) 692, 754
Psp124BI GAGCTC 1 cut(s) 201
Psp6I CCWGG 2 cut(s) 1076, 1260
PspGI CCWGG 2 cut(s) 1076, 1260
PspN4I GGNNCC 2 cut(s) 285, 1075
PspPI GGNCC 2 cut(s) 791, 995
PstNI CAGNNNCTG 1 cut(s) 998
RsaI GTAC 2 cut(s) 217, 1235
RsaNI GTAC 2 cut(s) 216, 1234
RseI CAYNNNNRTG 4 cut(s) 446, 505, 545, 668
SacI GAGCTC 1 cut(s) 201
SapI GCTCTTC 1 cut(s) 126
SaqAI TTAA 7 cut(s) 260, 516, 597, 708, 902, 1181, 1334
SatI GCNGC 4 cut(s) 276, 362, 799, 1145
Sau3AI GATC 4 cut(s) 651, 658, 748, 1383
Sau96I GGNCC 2 cut(s) 791, 995
ScrFI CCNGG 3 cut(s) 1078, 1205, 1262
SduI GDGCHC 2 cut(s) 201, 1311
SfaNI GCATC 5 cut(s) 174, 549, 921, 962, 1131
SinI GGWCC 1 cut(s) 791
SmiMI CAYNNNNRTG 4 cut(s) 446, 505, 545, 668
SmlI CTYRAG 2 cut(s) 626, 779
SmoI CTYRAG 2 cut(s) 626, 779
SphI GCATGC 1 cut(s) 1353
SseBI AGGCCT 1 cut(s) 521
SsiI CCGC 2 cut(s) 213, 961
SspMI CTAG 2 cut(s) 312, 572
SstI GAGCTC 1 cut(s) 201
StuI AGGCCT 1 cut(s) 521
StyD4I CCNGG 3 cut(s) 1076, 1203, 1260
StyI CCWWGG 4 cut(s) 279, 618, 870, 1272
TaaI ACNGT 4 cut(s) 175, 547, 1186, 1221
TaqI TCGA 2 cut(s) 909, 1161
Tru1I TTAA 7 cut(s) 260, 516, 597, 708, 902, 1181, 1334
Tru9I TTAA 7 cut(s) 260, 516, 597, 708, 902, 1181, 1334
TscAI CASTG 6 cut(s) 141, 552, 661, 885, 1035, 1318
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 4 cut(s) 275, 361, 798, 1144
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 1 cut(s) 1039
TspGWI ACGGA 1 cut(s) 1417
TspRI CASTG 6 cut(s) 141, 552, 661, 885, 1035, 1318
VpaK11BI GGWCC 1 cut(s) 791
XapI RAATTY 3 cut(s) 22, 1116, 1171
XceI RCATGY 3 cut(s) 696, 758, 1353
XcmI CCANNNNNNNNNTGG 1 cut(s) 877
XmiI GTMKAC 1 cut(s) 689
XspI CTAG 2 cut(s) 312, 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.