Rh7CG197000

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0007089
Physical Location & Seq
Reverse (-)
17414029 .. 17415883
1855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG197000.1

Sequence Viewer

Length: 948 bp
ATGTTCTGCTCAGGTCTCGCTCTTGCCTTTCACACACCAATCAACATAGTGCTTGCAAACGCTAAAGGAATTGAGGGAGTTGCAATGTCTGTCTGGATCACTGACCTTATGGTAGTGATTCTCCTTGCAATTTATGTGTGTGTGATTGAAGTTAAGGCAAAAGAAGGGAGGTGGAAAGAAGGCGGGTGGCTGGACCAAGGTGTTCGGGATTGGATTAGACTGCTCAAGCTTTGTGGACCTTGCTGCCTCACTACCTGCCTAGAATGGTGGTGCTATGAGATTCTGGTCCTGTTAGCTGGCCGGCTTGCCAATGCCAAGCAGGCAGTCGGAGTTTTAGCCATCGTACTAAACTTCGACTACTTGCTATACTCGGTGATGCTGTCTCTGGCAACATGTGCGTCGACTCGAGTCTCAAATGAGCTCGGAGCAAACAGGGCAGGACCTGCATACCAATCTGCATTTGTGTCTCTGGCAGTGAGTTTGGTCTCTGGTTGTTTAGGTGGATTGGTGATGGTAGCAGCCAGGGGAAGTTGGGGGTCGTTGTTTAGCCACGATAAGGGGATTGTAAGAGGTGTGAAGAAGATGATGCTGCTCATGGCTTTGGTGGAGGTTGTGAATTTCCCATTAGCTGCTTGCGGAGGGATTGTTCGAGGAACAGCGAGGCCATGGTTGGCTATGTATGCAAATCTTGGTGGATTCTACCTTCTGGCTTTGCCCTTGGGAGTTGTTTTAGCCTTCGAGGTTAAACTCGGGCTGAGTGGACTATTGATAGGATTCTTGATTGGGATGGTTGCTTGCTTGATTTTGTTGCTGATCTTTGTTTTAAGAATCAATTGGGATGAAGAAGCGTGCAAAGCACAAAGACTTGCCTCACTTTCCTGTCAAGCACCAGAACTTAACAAACACGAAAACCACAAAAACGTGGGGAGAGTCGATGCCGAAGTCTAA

Protein Analysis

315

Amino Acids

33.99

Weight (kDa)

8.54

Isoelectric Point (pI)

33.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 80 - 242 3.1e-30 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 263, 451
AccI GTMKAC 1 cut(s) 401
AciI CCGC 2 cut(s) 183, 636
AclWI GGATC 1 cut(s) 104
AcoI YGGCCR 1 cut(s) 298
AcsI RAATTY 1 cut(s) 616
AfaI GTAC 1 cut(s) 345
AfiI CCNNNNNNNGG 1 cut(s) 556
AflIII ACRYGT 1 cut(s) 392
AgsI TTSAA 1 cut(s) 149
AjnI CCWGG 1 cut(s) 521
AloI GAACNNNNNNTCC 2 cut(s) 630, 662
AluBI AGCT 4 cut(s) 229, 296, 421, 629
AluI AGCT 4 cut(s) 229, 296, 421, 629
Alw21I GWGCWC 1 cut(s) 423
Alw26I GTCTC 5 cut(s) 20, 387, 415, 471, 490
AlwI GGATC 1 cut(s) 104
AlwNI CAGNNNCTG 1 cut(s) 443
Ama87I CYCGRG 2 cut(s) 405, 749
AoxI GGCC 2 cut(s) 298, 662
ApeKI GCWGC 4 cut(s) 243, 518, 589, 629
ApoI RAATTY 1 cut(s) 616
AspS9I GGNCC 4 cut(s) 193, 236, 286, 440
AsuHPI GGTGA 2 cut(s) 385, 520
AvaI CYCGRG 2 cut(s) 405, 749
AvaII GGWCC 4 cut(s) 193, 236, 286, 440
BanII GRGCYC 1 cut(s) 423
Bbv12I GWGCWC 1 cut(s) 423
BbvI GCAGC 4 cut(s) 230, 530, 576, 616
BccI CCATC 3 cut(s) 347, 505, 781
BciT130I CCWGG 1 cut(s) 523
BcoDI GTCTC 5 cut(s) 20, 387, 415, 471, 490
BfaI CTAG 1 cut(s) 260
BfuAI ACCTGC 2 cut(s) 263, 451
BglI GCCNNNNNGGC 1 cut(s) 320
BisI GCNGC 4 cut(s) 244, 519, 590, 630
BlsI GCNGC 4 cut(s) 245, 520, 591, 631
Bme1390I CCNGG 1 cut(s) 523
Bme18I GGWCC 4 cut(s) 193, 236, 286, 440
BmeT110I CYCGRG 2 cut(s) 405, 749
BmgT120I GGNCC 4 cut(s) 193, 236, 286, 440
BmrFI CCNGG 1 cut(s) 523
BmsI GCATC 3 cut(s) 366, 576, 925
BoxI GACNNNNGTC 1 cut(s) 407
Bpu10I CCTNAGC 1 cut(s) 10
BpuEI CTTGAG 1 cut(s) 209
BsaI GGTCTC 2 cut(s) 20, 490
BsaJI CCNNGG 4 cut(s) 196, 522, 665, 717
BsaXI ACNNNNNCTCC 2 cut(s) 630, 660
Bsc4I CCNNNNNNNGG 1 cut(s) 556
Bse118I RCCGGY 1 cut(s) 300
Bse3DI GCAATG 1 cut(s) 90
BseBI CCWGG 1 cut(s) 523
BseDI CCNNGG 4 cut(s) 196, 522, 665, 717
BseGI GGATG 2 cut(s) 792, 844
BseLI CCNNNNNNNGG 1 cut(s) 556
BseMI GCAATG 1 cut(s) 90
BseMII CTCAG 2 cut(s) 24, 746
BseXI GCAGC 4 cut(s) 230, 530, 576, 616
BshFI GGCC 2 cut(s) 300, 664
BsiHKAI GWGCWC 1 cut(s) 423
BsiHKCI CYCGRG 2 cut(s) 405, 749
BsiSI CCGG 1 cut(s) 301
BslI CCNNNNNNNGG 1 cut(s) 556
BsmAI GTCTC 5 cut(s) 20, 387, 415, 471, 490
BsnI GGCC 2 cut(s) 300, 664
Bso31I GGTCTC 2 cut(s) 20, 490
BsoBI CYCGRG 2 cut(s) 405, 749
Bsp1286I GDGCHC 1 cut(s) 423
Bsp143I GATC 2 cut(s) 96, 813
Bsp19I CCATGG 1 cut(s) 665
BspACI CCGC 2 cut(s) 183, 636
BspANI GGCC 2 cut(s) 300, 664
BspCNI CTCAG 2 cut(s) 23, 747
BspMI ACCTGC 2 cut(s) 263, 451
BspPI GGATC 1 cut(s) 104
BspTNI GGTCTC 2 cut(s) 20, 490
BsrDI GCAATG 1 cut(s) 90
BsrFI RCCGGY 1 cut(s) 300
BssAI RCCGGY 1 cut(s) 300
BssECI CCNNGG 4 cut(s) 196, 522, 665, 717
BssMI GATC 2 cut(s) 96, 813
BssT1I CCWWGG 3 cut(s) 196, 665, 717
Bst2UI CCWGG 1 cut(s) 523
BstAPI GCANNNNNTGC 2 cut(s) 395, 443
BstC8I GCNNGC 8 cut(s) 54, 298, 302, 306, 321, 634, 796, 850
BstDEI CTNAG 2 cut(s) 10, 755
BstDSI CCRYGG 1 cut(s) 665
BstF5I GGATG 2 cut(s) 792, 844
BstKTI GATC 2 cut(s) 99, 816
BstMAI GTCTC 5 cut(s) 20, 387, 415, 471, 490
BstMBI GATC 2 cut(s) 96, 813
BstMWI GCNNNNNNNGC 6 cut(s) 320, 395, 434, 443, 680, 854
BstNI CCWGG 1 cut(s) 523
BstNSI RCATGY 1 cut(s) 396
BstPAI GACNNNNGTC 1 cut(s) 407
BstSCI CCNGG 1 cut(s) 521
BstV1I GCAGC 4 cut(s) 230, 530, 576, 616
BsuRI GGCC 2 cut(s) 300, 664
BtgI CCRYGG 1 cut(s) 665
BtsCI GGATG 2 cut(s) 792, 844
BtsI GCAGTG 1 cut(s) 480
BtsIMutI CAGTG 2 cut(s) 99, 480
BveI ACCTGC 2 cut(s) 263, 451
Cac8I GCNNGC 8 cut(s) 54, 298, 302, 306, 321, 634, 796, 850
CaiI CAGNNNCTG 1 cut(s) 443
Cfr10I RCCGGY 1 cut(s) 300
Cfr13I GGNCC 4 cut(s) 193, 236, 286, 440
CseI GACGC 1 cut(s) 387
Csp6I GTAC 1 cut(s) 344
CspCI CAANNNNNGTGG 2 cut(s) 214, 249
CviAII CATG 3 cut(s) 393, 595, 666
CviQI GTAC 1 cut(s) 344
DdeI CTNAG 2 cut(s) 10, 755
DpnI GATC 2 cut(s) 98, 815
DpnII GATC 2 cut(s) 96, 813
EaeI YGGCCR 1 cut(s) 298
Ecl136II GAGCTC 1 cut(s) 421
Eco130I CCWWGG 3 cut(s) 196, 665, 717
Eco24I GRGCYC 1 cut(s) 423
Eco31I GGTCTC 2 cut(s) 20, 490
Eco47I GGWCC 4 cut(s) 193, 236, 286, 440
Eco53kI GAGCTC 1 cut(s) 421
Eco88I CYCGRG 2 cut(s) 405, 749
EcoICRI GAGCTC 1 cut(s) 421
EcoO109I RGGNCCY 1 cut(s) 440
EcoRII CCWGG 1 cut(s) 521
EcoT14I CCWWGG 3 cut(s) 196, 665, 717
EcoT38I GRGCYC 1 cut(s) 423
ErhI CCWWGG 3 cut(s) 196, 665, 717
FaeI CATG 3 cut(s) 396, 598, 669
FatI CATG 3 cut(s) 392, 594, 665
FauI CCCGC 1 cut(s) 176
FblI GTMKAC 1 cut(s) 401
Fnu4HI GCNGC 4 cut(s) 244, 519, 590, 630
FokI GGATG 2 cut(s) 799, 851
FriOI GRGCYC 1 cut(s) 423
Fsp4HI GCNGC 4 cut(s) 244, 519, 590, 630
FspBI CTAG 1 cut(s) 260
GluI GCNGC 4 cut(s) 244, 519, 590, 630
HaeIII GGCC 2 cut(s) 300, 664
HapII CCGG 1 cut(s) 301
HgaI GACGC 1 cut(s) 387
Hin1II CATG 3 cut(s) 396, 598, 669
HincII GTYRAC 1 cut(s) 402
HindII GTYRAC 1 cut(s) 402
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 8 cut(s) 118, 280, 403, 408, 696, 774, 828, 930
HpaII CCGG 1 cut(s) 301
HphI GGTGA 2 cut(s) 385, 520
Hpy166II GTNNAC 3 cut(s) 236, 402, 761
Hpy188I TCNGA 2 cut(s) 329, 425
Hpy188III TCNNGA 3 cut(s) 94, 206, 778
Hpy8I GTNNAC 3 cut(s) 236, 402, 761
Hpy99I CGWCG 1 cut(s) 403
HpyAV CCTTC 4 cut(s) 158, 173, 713, 745
HpyCH4IV ACGT 1 cut(s) 921
HpyCH4V TGCA 7 cut(s) 56, 83, 128, 446, 458, 683, 852
HpyF10VI GCNNNNNNNGC 6 cut(s) 320, 395, 434, 443, 680, 854
HpyF3I CTNAG 2 cut(s) 10, 755
HpySE526I ACGT 1 cut(s) 921
Hsp92II CATG 3 cut(s) 396, 598, 669
KroI GCCGGC 1 cut(s) 300
KroNI GCCGGC 1 cut(s) 302
Kzo9I GATC 2 cut(s) 96, 813
LmnI GCTCC 1 cut(s) 425
Lsp1109I GCAGC 4 cut(s) 230, 530, 576, 616
LweI GCATC 3 cut(s) 366, 576, 925
MaeI CTAG 1 cut(s) 260
MaeII ACGT 1 cut(s) 921
MalI GATC 2 cut(s) 98, 815
MboI GATC 2 cut(s) 96, 813
MboII GAAGA 3 cut(s) 589, 592, 854
MfeI CAATTG 1 cut(s) 832
MhlI GDGCHC 1 cut(s) 423
MluCI AATT 4 cut(s) 69, 129, 616, 832
MlyI GAGTC 3 cut(s) 397, 417, 939
MmeI TCCRAC 1 cut(s) 307
MroNI GCCGGC 1 cut(s) 300
MseI TTAA 4 cut(s) 153, 744, 824, 897
MspI CCGG 1 cut(s) 301
MspR9I CCNGG 1 cut(s) 523
MunI CAATTG 1 cut(s) 832
MvaI CCWGG 1 cut(s) 523
MwoI GCNNNNNNNGC 6 cut(s) 320, 395, 434, 443, 680, 854
NaeI GCCGGC 1 cut(s) 302
NcoI CCATGG 1 cut(s) 665
NdeII GATC 2 cut(s) 96, 813
NgoMIV GCCGGC 1 cut(s) 300
NlaIII CATG 3 cut(s) 396, 598, 669
NspI RCATGY 1 cut(s) 396
PaeR7I CTCGAG 1 cut(s) 405
PciI ACATGT 1 cut(s) 392
PdiI GCCGGC 1 cut(s) 302
PfeI GAWTC 5 cut(s) 118, 280, 696, 774, 828
PkrI GCNGC 4 cut(s) 245, 520, 591, 631
PleI GAGTC 3 cut(s) 397, 416, 938
PpsI GAGTC 3 cut(s) 397, 416, 938
PpuMI RGGWCCY 1 cut(s) 440
PscI ACATGT 1 cut(s) 392
PshAI GACNNNNGTC 1 cut(s) 407
Psp124BI GAGCTC 1 cut(s) 423
Psp5II RGGWCCY 1 cut(s) 440
Psp6I CCWGG 1 cut(s) 521
PspGI CCWGG 1 cut(s) 521
PspPI GGNCC 4 cut(s) 193, 236, 286, 440
PspPPI RGGWCCY 1 cut(s) 440
PspXI VCTCGAGB 1 cut(s) 405
PstNI CAGNNNCTG 1 cut(s) 443
RsaI GTAC 1 cut(s) 345
RsaNI GTAC 1 cut(s) 344
SacI GAGCTC 1 cut(s) 423
SalI GTCGAC 1 cut(s) 400
SaqAI TTAA 4 cut(s) 153, 744, 824, 897
SatI GCNGC 4 cut(s) 244, 519, 590, 630
Sau3AI GATC 2 cut(s) 96, 813
Sau96I GGNCC 4 cut(s) 193, 236, 286, 440
SchI GAGTC 3 cut(s) 397, 417, 939
ScrFI CCNGG 1 cut(s) 523
SduI GDGCHC 1 cut(s) 423
SfaNI GCATC 3 cut(s) 366, 576, 925
Sfr274I CTCGAG 1 cut(s) 405
SinI GGWCC 4 cut(s) 193, 236, 286, 440
SlaI CTCGAG 1 cut(s) 405
SmlI CTYRAG 2 cut(s) 224, 405
SmoI CTYRAG 2 cut(s) 224, 405
Sse9I AATT 4 cut(s) 69, 129, 616, 832
SsiI CCGC 2 cut(s) 183, 636
SspMI CTAG 1 cut(s) 260
SstI GAGCTC 1 cut(s) 423
StyD4I CCNGG 1 cut(s) 521
StyI CCWWGG 3 cut(s) 196, 665, 717
TaiI ACGT 1 cut(s) 924
TaqI TCGA 6 cut(s) 354, 401, 406, 649, 738, 933
TasI AATT 4 cut(s) 69, 129, 616, 832
TfiI GAWTC 5 cut(s) 118, 280, 696, 774, 828
Tru1I TTAA 4 cut(s) 153, 744, 824, 897
Tru9I TTAA 4 cut(s) 153, 744, 824, 897
TscAI CASTG 2 cut(s) 106, 480
TseI GCWGC 4 cut(s) 243, 518, 589, 629
TspDTI ATGAA 1 cut(s) 855
TspRI CASTG 2 cut(s) 106, 480
VpaK11BI GGWCC 4 cut(s) 193, 236, 286, 440
XapI RAATTY 1 cut(s) 616
XceI RCATGY 1 cut(s) 396
XhoI CTCGAG 1 cut(s) 405
XmiI GTMKAC 1 cut(s) 401
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.