Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0007089

Physical Location & Seq

Genomic Coordinates Forward (+)

17935691 .. 17936158

Gene Structure 468 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG192000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGTTTGCCAAAATAGCCATCACAACAGCTTTTCTAGGAAGACTCGGAGAGCTTCAACTGGCTGGTGGCACACTCGGTTTCACTTTCGCTATGTCACCGGCTTCTCTGTCTTGAGTGGTCTCTGTGGTGCCATGGAGCCCGTATGTGGTCAAGCATATGGAGCCAAAAACATTAGGCTTCTCCACAAGACCCTTCTTATGACAACTTTCTTGTTACTTCTTGCAACTCTTCCTATTTCATTTTTGTGGCTCAGTGTTGACAAAATCCTGATCCATTTTGGCCAACAAGAAGATATTTCAACAGTTGCAAAGACCTACCTTTTCTATCTCCTACCAGACTTGGTTATTACAGCATTGCTTTGTCCCCTCAAAGCCTACTTCGCAAGGCATCACGGTTCCTCCCATGTTCTGCTCAGGTCTCGCTCTTGCCTTTCACATACCAATCAACATAGTGCTTGCAAACGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0008150 GO:0009987 GO:0010033 GO:0010035 GO:0010037 GO:0010119 GO:0015238 GO:0015691 GO:0015893 GO:0016020 GO:0022857 GO:0030001 GO:0035690 GO:0042221 GO:0042493 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051716 GO:0055085 GO:0065007 GO:0065008 GO:0070838 GO:0070887 GO:0071241 GO:0071244 GO:0071944 GO:0072347 GO:0072511 GO:1901700 GO:1901701 GO:1902456

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

155

Amino Acids

17.66

Weight (kDa)

9.93

Isoelectric Point (pI)

47.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	33 - 127	9e-19	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22790
fragaria_vesca	FvH4_5g00900
malus_domestica	MD06G1067200.v1.1 MD06G1067400.v1.1 MD17G1137500.v1.1
prunus_persica	Prupe.5G082100_v2.0.a1
pyrus_communis	pycom06g06480
rosa_chinensis	RchiOBHm_Chr7g0200481 RchiOBHm_Chr7g0200881
rosa_laevigata	RLG00000003709 RLG00000003722
rosa_multiflora	Rmu_sc0000617.1_g000024 Rmu_sc0000708.1_g000018
rosa_roxburghii	Rroxscaffold_3G00255930
rosa_rugosa	Rorug07G0060600
rosa_samantha	Rh7AG186100 Rh7AG186200 Rh7BG189200 Rh7CG196300 Rh7CG197000 Rh7DG190200 Rh7DG192000 Rh7DG192100
rosa_wichuraiana	Rw7G016330 Rw7G016390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	128
AclWI	GGATC	1 cut(s)	265
AcoI	YGGCCR	1 cut(s)	280
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	2 cut(s)	57, 300
AluBI	AGCT	2 cut(s)	30, 53
AluI	AGCT	2 cut(s)	30, 53
Alw26I	GTCTC	2 cut(s)	125, 423
AlwI	GGATC	1 cut(s)	265
AoxI	GGCC	1 cut(s)	280
AsuHPI	GGTGA	1 cut(s)	88
BalI	TGGCCA	1 cut(s)	282
BanI	GGYRCC	1 cut(s)	128
BanII	GRGCYC	1 cut(s)	141
BbsI	GAAGAC	1 cut(s)	47
BccI	CCATC	1 cut(s)	27
BcoDI	GTCTC	2 cut(s)	125, 423
BfaI	CTAG	1 cut(s)	36
BmiI	GGNNCC	4 cut(s)	130, 138, 163, 397
BmsI	GCATC	1 cut(s)	397
BpiI	GAAGAC	1 cut(s)	47
Bpu10I	CCTNAGC	1 cut(s)	413
BpuEI	CTTGAG	1 cut(s)	133
BsaI	GGTCTC	2 cut(s)	125, 423
BsaJI	CCNNGG	1 cut(s)	132
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse118I	RCCGGY	1 cut(s)	98
Bse1I	ACTGG	1 cut(s)	64
Bse3DI	GCAATG	1 cut(s)	353
BseDI	CCNNGG	1 cut(s)	132
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMI	GCAATG	1 cut(s)	353
BseMII	CTCAG	2 cut(s)	265, 427
BseNI	ACTGG	1 cut(s)	64
BshFI	GGCC	1 cut(s)	282
BshNI	GGYRCC	1 cut(s)	128
BsiSI	CCGG	1 cut(s)	99
BslFI	GGGAC	1 cut(s)	348
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmAI	GTCTC	2 cut(s)	125, 423
BsmFI	GGGAC	1 cut(s)	348
BsnI	GGCC	1 cut(s)	282
Bso31I	GGTCTC	2 cut(s)	125, 423
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	1 cut(s)	270
Bsp19I	CCATGG	1 cut(s)	132
BspANI	GGCC	1 cut(s)	282
BspCNI	CTCAG	2 cut(s)	264, 426
BspLI	GGNNCC	4 cut(s)	130, 138, 163, 397
BspPI	GGATC	1 cut(s)	265
BspT107I	GGYRCC	1 cut(s)	128
BspTNI	GGTCTC	2 cut(s)	125, 423
BsrDI	GCAATG	1 cut(s)	353
BsrFI	RCCGGY	1 cut(s)	98
BsrI	ACTGG	1 cut(s)	64
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	132
BssMI	GATC	1 cut(s)	270
BssT1I	CCWWGG	1 cut(s)	132
Bst4CI	ACNGT	2 cut(s)	304, 395
Bst6I	CTCTTC	1 cut(s)	234
BstC8I	GCNNGC	1 cut(s)	457
BstDEI	CTNAG	2 cut(s)	251, 413
BstDSI	CCRYGG	1 cut(s)	132
BstKTI	GATC	1 cut(s)	273
BstMAI	GTCTC	2 cut(s)	125, 423
BstMBI	GATC	1 cut(s)	270
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 161, 380
BstV2I	GAAGAC	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	282
BtgI	CCRYGG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	259
Cac8I	GCNNGC	1 cut(s)	457
Cfr10I	RCCGGY	1 cut(s)	98
CviAII	CATG	2 cut(s)	133, 404
DdeI	CTNAG	2 cut(s)	251, 413
DpnI	GATC	1 cut(s)	272
DpnII	GATC	1 cut(s)	270
EaeI	YGGCCR	1 cut(s)	280
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	132
Eco24I	GRGCYC	1 cut(s)	141
Eco31I	GGTCTC	2 cut(s)	125, 423
EcoT14I	CCWWGG	1 cut(s)	132
EcoT38I	GRGCYC	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	2 cut(s)	136, 407
FaiI	YATR	9 cut(s)	93, 134, 145, 157, 159, 200, 405, 438, 450
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	2 cut(s)	132, 403
FauNDI	CATATG	1 cut(s)	157
FriOI	GRGCYC	1 cut(s)	141
FspBI	CTAG	1 cut(s)	36
HaeIII	GGCC	1 cut(s)	282
HapII	CCGG	1 cut(s)	99
Hin1II	CATG	2 cut(s)	136, 407
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HinfI	GANTC	1 cut(s)	43
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	1 cut(s)	48
Hpy188III	TCNNGA	2 cut(s)	112, 268
Hpy8I	GTNNAC	1 cut(s)	259
HpyAV	CCTTC	1 cut(s)	203
HpyCH4III	ACNGT	2 cut(s)	304, 395
HpyCH4V	TGCA	3 cut(s)	224, 308, 459
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 161, 380
HpyF3I	CTNAG	2 cut(s)	251, 413
Hsp92II	CATG	2 cut(s)	136, 407
Kzo9I	GATC	1 cut(s)	270
LmnI	GCTCC	2 cut(s)	136, 161
LpnPI	CCDG	6 cut(s)	45, 49, 112, 281, 348, 400
LweI	GCATC	1 cut(s)	397
MaeI	CTAG	1 cut(s)	36
MaeIII	GTNAC	2 cut(s)	94, 213
MalI	GATC	1 cut(s)	272
MboI	GATC	1 cut(s)	270
MboII	GAAGA	3 cut(s)	52, 221, 302
MhlI	GDGCHC	1 cut(s)	141
MlsI	TGGCCA	1 cut(s)	282
MluNI	TGGCCA	1 cut(s)	282
MlyI	GAGTC	1 cut(s)	37
MnlI	CCTC	2 cut(s)	377, 409
Mox20I	TGGCCA	1 cut(s)	282
MscI	TGGCCA	1 cut(s)	282
MslI	CAYNNNNRTG	1 cut(s)	244
Msp20I	TGGCCA	1 cut(s)	282
MspI	CCGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	3 cut(s)	15, 161, 380
NcoI	CCATGG	1 cut(s)	132
NdeI	CATATG	1 cut(s)	157
NdeII	GATC	1 cut(s)	270
NlaIII	CATG	2 cut(s)	136, 407
NlaIV	GGNNCC	4 cut(s)	130, 138, 163, 397
NmuCI	GTSAC	1 cut(s)	94
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PspN4I	GGNNCC	4 cut(s)	130, 138, 163, 397
RseI	CAYNNNNRTG	1 cut(s)	244
Sau3AI	GATC	1 cut(s)	270
SchI	GAGTC	1 cut(s)	37
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	5 cut(s)	32, 55, 317, 321, 419
SfaNI	GCATC	1 cut(s)	397
SmiMI	CAYNNNNRTG	1 cut(s)	244
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
SspMI	CTAG	1 cut(s)	36
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	2 cut(s)	304, 395
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	1 cut(s)	94
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	1 cut(s)	228
TspRI	CASTG	1 cut(s)	259
XspI	CTAG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.