FvH4_5g00900

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
521232 .. 522752
1521 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g00900.t1

Sequence Viewer

Length: 1521 bp
ATGTCTGCAACAACATCACAAAACAGTCCACCAGAGAGTGTCTCTCAACCATGTTCATCCCTACCTCACACCCAAAAATGGCCTACCAACTTCCTCAACATCATGCTTGCAGAGCTCAAAATACAAAGAGGGATAGCTCTTCCTCTCGTGGCTATGAACTTGACATGGTTTGCCAAGATAGCCATCACAACAGCTTTTCTAGGAAGACTAGGAGAGCTTCAACTGGCAGGCAGCACACTCGGTTTCACTTTCGCTAATGTCACCGGCTTCTCTGTCTTGAGTGGTCTGTGTGGTGCCATGGAGCCTATATGTGGTCAAGCATATGGAGCCAAAAACATCAGGCTTCTCCACAAGACCCTTCTCATGACAACTTTCTTGTTACTTCTTGCAACTCTTCCTATTTCATTTTTGTGGCTCAGTGTTGACAAAATCCTCATTCATTTTGGCCAACAAGAAGATATCTCAACAGTTGCAAAGACCTACCTTTTCTATCTCCTACCAGACTTAGTTATCACCGCATTGCTTTGTCCCCTCAAAGCCTACTTGAACTCGCAAAGCATTACAGTTCCTTCCATGTTCTGCTCAGGTGTTGCCCTAGCCCTTCACATACCAATCAACATAGTGCTTGCAAACGCTAAAGGTATTGGGGGAGTTGCAATGTCAGTGTGGATCACTGACCTTATGGTTGTGATTCTACTTGCAATTTATGTGTGTGTGATTGAAGCTAGATCAAAGGAAGGGAGGTGGAAAGAAGGAGGGTGGTTGGACCAATGTGTTTGGGATTGGATTAGGCTGCTCAAGCTTTGTGGACCTTGCTGCCTCACTACCTGCCTAGAATGGTGGTGCTATGAGATTCTGGTCTTGTTAACTGGCAGGCTTGCCAATGCCAAGCAGGCAGTTGGAGTTTTAGCCATTGTACTAAATTTCGACTACCTGCTATACTCGGTGATGCTGTCTCTGGCAACATGCGCGTCGACTCGAGTCTCAAATGAGCTCGGAGCAAACAGGGCACGCCCAGCATACCAGTCTGCATTTGTGTCAATAGCGGTGAGTTTGATCTCGGGTTGTTTAGGTGGATTGGTGATGGTAGCAGCCAGGGGATGTTGGGGGTCATTGTTTAGTCATGATAAGGGGATTGTAAGAGGTGTGAAGAAGATGATGCTGCTGATGGCTTTGGTGGAGGTTGTGAATTTCCCACTAGCTGTTTGTGGAGGGATTGTGAGAGGAACAGCGAGGCCATGGTTGGCCATGTATGCAAATCTTGGTGGATTCTACCTTCTGGCTTTGCCCTTGGGAGTTGTTTTAGCCTTCAAGGTTAAACTGGGGCTGAGTGGACTGTTAATAGGATTCTTGATTGGGATGGTTGCTTGCTTGATTTTGTTGATGATGTTTGTTCTAAGAATCAACTGGGATGAAGAAGCGTGCAAAGCACAAAGACTTGCCTCAGTTTCATGTCAGGCACCAGTACTCAACAAAGATGAAAACCACAAAAGTGTGGGGAGTGTTGAGGTCGAAGTCTAA

Protein Analysis

507

Amino Acids

54.83

Weight (kDa)

8.78

Isoelectric Point (pI)

36.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 48 - 207 3.4e-31 MatE
MatE PF01554 271 - 433 2.2e-31 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 836, 942
AccB1I GGYRCC 2 cut(s) 293, 1459
AccI GTMKAC 1 cut(s) 974
AccII CGCG 1 cut(s) 971
AciI CCGC 2 cut(s) 516, 1046
AclWI GGATC 1 cut(s) 677
AcoI YGGCCR 2 cut(s) 445, 1245
AcsI RAATTY 2 cut(s) 922, 1189
AfaI GTAC 2 cut(s) 918, 1467
AfiI CCNNNNNNNGG 2 cut(s) 78, 311
AgsI TTSAA 4 cut(s) 221, 547, 722, 1312
AjnI CCWGG 1 cut(s) 1094
AleI CACNNNNGTG 1 cut(s) 1491
AluBI AGCT 8 cut(s) 115, 137, 194, 217, 725, 802, 994, 1202
AluI AGCT 8 cut(s) 115, 137, 194, 217, 725, 802, 994, 1202
Alw21I GWGCWC 2 cut(s) 117, 996
Alw26I GTCTC 3 cut(s) 46, 960, 988
AlwI GGATC 1 cut(s) 677
Ama87I CYCGRG 2 cut(s) 978, 1060
AoxI GGCC 4 cut(s) 80, 445, 1235, 1245
ApeKI GCWGC 5 cut(s) 231, 793, 816, 1091, 1162
ApoI RAATTY 2 cut(s) 922, 1189
AspLEI GCGC 1 cut(s) 971
AspS9I GGNCC 2 cut(s) 766, 809
AsuHPI GGTGA 5 cut(s) 253, 505, 958, 1060, 1093
AvaI CYCGRG 2 cut(s) 978, 1060
AvaII GGWCC 2 cut(s) 766, 809
BaeGI GKGCMC 1 cut(s) 1012
BalI TGGCCA 2 cut(s) 447, 1247
BanI GGYRCC 2 cut(s) 293, 1459
BanII GRGCYC 2 cut(s) 117, 996
BauI CACGAG 1 cut(s) 146
BbsI GAAGAC 1 cut(s) 211
Bbv12I GWGCWC 2 cut(s) 117, 996
BbvI GCAGC 5 cut(s) 243, 780, 803, 1103, 1149
BccI CCATC 4 cut(s) 191, 1078, 1162, 1354
BcgI CGANNNNNNTGC 2 cut(s) 220, 254
BciT130I CCWGG 1 cut(s) 1096
BcoDI GTCTC 3 cut(s) 46, 960, 988
BfaI CTAG 6 cut(s) 200, 209, 596, 726, 833, 1199
BfuAI ACCTGC 2 cut(s) 836, 942
BglI GCCNNNNNGGC 1 cut(s) 893
BisI GCNGC 5 cut(s) 232, 794, 817, 1092, 1163
BlsI GCNGC 5 cut(s) 233, 795, 818, 1093, 1164
BmcAI AGTACT 1 cut(s) 1467
Bme1390I CCNGG 1 cut(s) 1096
Bme18I GGWCC 2 cut(s) 766, 809
BmeT110I CYCGRG 2 cut(s) 978, 1060
BmgT120I GGNCC 2 cut(s) 766, 809
BmiI GGNNCC 4 cut(s) 295, 303, 328, 1461
BmrFI CCNGG 1 cut(s) 1096
BmrI ACTGGG 2 cut(s) 1331, 1417
BmsI GCATC 2 cut(s) 939, 1149
BmuI ACTGGG 2 cut(s) 1331, 1417
BoxI GACNNNNGTC 1 cut(s) 980
BpiI GAAGAC 1 cut(s) 211
BplI GAGNNNNNCTC 4 cut(s) 26, 58, 28, 60
Bpu10I CCTNAGC 1 cut(s) 583
BpuEI CTTGAG 2 cut(s) 298, 782
BsaBI GATNNNNATC 1 cut(s) 182
BsaJI CCNNGG 4 cut(s) 297, 1095, 1238, 1290
BsaXI ACNNNNNCTCC 2 cut(s) 1203, 1233
Bsc4I CCNNNNNNNGG 2 cut(s) 78, 311
Bse118I RCCGGY 1 cut(s) 263
Bse1I ACTGG 6 cut(s) 228, 874, 1024, 1326, 1412, 1463
Bse3DI GCAATG 2 cut(s) 518, 663
Bse8I GATNNNNATC 1 cut(s) 182
BseBI CCWGG 1 cut(s) 1096
BseDI CCNNGG 4 cut(s) 297, 1095, 1238, 1290
BseGI GGATG 4 cut(s) 56, 1106, 1365, 1417
BseJI GATNNNNATC 1 cut(s) 182
BseLI CCNNNNNNNGG 2 cut(s) 78, 311
BseMI GCAATG 2 cut(s) 518, 663
BseMII CTCAG 4 cut(s) 430, 597, 1319, 1458
BseNI ACTGG 6 cut(s) 228, 874, 1024, 1326, 1412, 1463
BseSI GKGCMC 1 cut(s) 1012
BseXI GCAGC 5 cut(s) 243, 780, 803, 1103, 1149
BseYI CCCAGC 1 cut(s) 1015
Bsh1236I CGCG 1 cut(s) 971
BshFI GGCC 4 cut(s) 82, 447, 1237, 1247
BshNI GGYRCC 2 cut(s) 293, 1459
BsiHKAI GWGCWC 2 cut(s) 117, 996
BsiHKCI CYCGRG 2 cut(s) 978, 1060
BsiSI CCGG 1 cut(s) 264
BslFI GGGAC 1 cut(s) 513
BslI CCNNNNNNNGG 2 cut(s) 78, 311
BsmAI GTCTC 3 cut(s) 46, 960, 988
BsmFI GGGAC 1 cut(s) 513
BsnI GGCC 4 cut(s) 82, 447, 1237, 1247
BsoBI CYCGRG 2 cut(s) 978, 1060
Bsp1286I GDGCHC 3 cut(s) 117, 996, 1012
Bsp143I GATC 3 cut(s) 669, 728, 1056
Bsp19I CCATGG 2 cut(s) 297, 1238
BspACI CCGC 2 cut(s) 516, 1046
BspANI GGCC 4 cut(s) 82, 447, 1237, 1247
BspCNI CTCAG 4 cut(s) 429, 596, 1320, 1457
BspFNI CGCG 1 cut(s) 971
BspHI TCATGA 2 cut(s) 363, 1123
BspLI GGNNCC 4 cut(s) 295, 303, 328, 1461
BspMI ACCTGC 2 cut(s) 836, 942
BspPI GGATC 1 cut(s) 677
BspQI GCTCTTC 1 cut(s) 144
BspT107I GGYRCC 2 cut(s) 293, 1459
BsrDI GCAATG 2 cut(s) 518, 663
BsrFI RCCGGY 1 cut(s) 263
BsrI ACTGG 6 cut(s) 228, 874, 1024, 1326, 1412, 1463
BssAI RCCGGY 1 cut(s) 263
BssECI CCNNGG 4 cut(s) 297, 1095, 1238, 1290
BssMI GATC 3 cut(s) 669, 728, 1056
BssSI CACGAG 1 cut(s) 146
BssT1I CCWWGG 3 cut(s) 297, 1238, 1290
Bst2BI CACGAG 1 cut(s) 146
Bst2UI CCWGG 1 cut(s) 1096
Bst4CI ACNGT 4 cut(s) 26, 469, 565, 1338
Bst6I CTCTTC 2 cut(s) 144, 399
BstC8I GCNNGC 9 cut(s) 108, 229, 627, 875, 879, 894, 1012, 1369, 1423
BstDEI CTNAG 6 cut(s) 416, 505, 583, 1328, 1397, 1444
BstDSI CCRYGG 2 cut(s) 297, 1238
BstF5I GGATG 4 cut(s) 56, 1106, 1365, 1417
BstFNI CGCG 1 cut(s) 971
BstHHI GCGC 1 cut(s) 971
BstKTI GATC 3 cut(s) 672, 731, 1059
BstMAI GTCTC 3 cut(s) 46, 960, 988
BstMBI GATC 3 cut(s) 669, 728, 1056
BstNI CCWGG 1 cut(s) 1096
BstNSI RCATGY 1 cut(s) 969
BstPAI GACNNNNGTC 1 cut(s) 980
BstSCI CCNGG 1 cut(s) 1094
BstSLI GKGCMC 1 cut(s) 1012
BstUI CGCG 1 cut(s) 971
BstV1I GCAGC 5 cut(s) 243, 780, 803, 1103, 1149
BstV2I GAAGAC 1 cut(s) 211
BsuRI GGCC 4 cut(s) 82, 447, 1237, 1247
BtgI CCRYGG 2 cut(s) 297, 1238
BtsCI GGATG 4 cut(s) 56, 1106, 1365, 1417
BtsIMutI CAGTG 3 cut(s) 424, 669, 672
BveI ACCTGC 2 cut(s) 836, 942
Cac8I GCNNGC 9 cut(s) 108, 229, 627, 875, 879, 894, 1012, 1369, 1423
CciI TCATGA 2 cut(s) 363, 1123
CfoI GCGC 1 cut(s) 971
Cfr10I RCCGGY 1 cut(s) 263
Cfr13I GGNCC 2 cut(s) 766, 809
CseI GACGC 1 cut(s) 960
Csp6I GTAC 2 cut(s) 917, 1466
CspCI CAANNNNNGTGG 2 cut(s) 787, 822
CviQI GTAC 2 cut(s) 917, 1466
DdeI CTNAG 6 cut(s) 416, 505, 583, 1328, 1397, 1444
DpnI GATC 3 cut(s) 671, 730, 1058
DpnII GATC 3 cut(s) 669, 728, 1056
EaeI YGGCCR 2 cut(s) 445, 1245
Eam1104I CTCTTC 2 cut(s) 144, 399
EarI CTCTTC 2 cut(s) 144, 399
Ecl136II GAGCTC 2 cut(s) 115, 994
Eco130I CCWWGG 3 cut(s) 297, 1238, 1290
Eco24I GRGCYC 2 cut(s) 117, 996
Eco32I GATATC 1 cut(s) 460
Eco47I GGWCC 2 cut(s) 766, 809
Eco53kI GAGCTC 2 cut(s) 115, 994
Eco88I CYCGRG 2 cut(s) 978, 1060
EcoICRI GAGCTC 2 cut(s) 115, 994
EcoRII CCWGG 1 cut(s) 1094
EcoRV GATATC 1 cut(s) 460
EcoT14I CCWWGG 3 cut(s) 297, 1238, 1290
EcoT38I GRGCYC 2 cut(s) 117, 996
ErhI CCWWGG 3 cut(s) 297, 1238, 1290
FaqI GGGAC 1 cut(s) 513
FauNDI CATATG 1 cut(s) 322
FblI GTMKAC 1 cut(s) 974
Fnu4HI GCNGC 5 cut(s) 232, 794, 817, 1092, 1163
FokI GGATG 4 cut(s) 43, 1113, 1372, 1424
FriOI GRGCYC 2 cut(s) 117, 996
Fsp4HI GCNGC 5 cut(s) 232, 794, 817, 1092, 1163
FspBI CTAG 6 cut(s) 200, 209, 596, 726, 833, 1199
GlaI GCGC 1 cut(s) 970
GluI GCNGC 5 cut(s) 232, 794, 817, 1092, 1163
GsaI CCCAGC 1 cut(s) 1019
HaeIII GGCC 4 cut(s) 82, 447, 1237, 1247
HapII CCGG 1 cut(s) 264
HgaI GACGC 1 cut(s) 960
HhaI GCGC 1 cut(s) 971
Hin6I GCGC 1 cut(s) 969
HinP1I GCGC 1 cut(s) 969
HincII GTYRAC 3 cut(s) 424, 867, 975
HindII GTYRAC 3 cut(s) 424, 867, 975
HindIII AAGCTT 1 cut(s) 800
HinfI GANTC 7 cut(s) 691, 853, 976, 981, 1269, 1347, 1401
HpaI GTTAAC 1 cut(s) 867
HpaII CCGG 1 cut(s) 264
HphI GGTGA 5 cut(s) 253, 505, 958, 1060, 1093
Hpy166II GTNNAC 6 cut(s) 29, 424, 809, 867, 975, 1334
Hpy188I TCNGA 1 cut(s) 998
Hpy188III TCNNGA 4 cut(s) 277, 364, 1124, 1351
Hpy8I GTNNAC 6 cut(s) 29, 424, 809, 867, 975, 1334
Hpy99I CGWCG 1 cut(s) 976
HpyAV CCTTC 7 cut(s) 368, 579, 611, 731, 746, 1286, 1318
HpyCH4III ACNGT 4 cut(s) 26, 469, 565, 1338
HpyF3I CTNAG 6 cut(s) 416, 505, 583, 1328, 1397, 1444
HspAI GCGC 1 cut(s) 969
KspAI GTTAAC 1 cut(s) 867
Kzo9I GATC 3 cut(s) 669, 728, 1056
LguI GCTCTTC 1 cut(s) 144
LmnI GCTCC 3 cut(s) 301, 326, 998
Lsp1109I GCAGC 5 cut(s) 243, 780, 803, 1103, 1149
LweI GCATC 2 cut(s) 939, 1149
MaeI CTAG 6 cut(s) 200, 209, 596, 726, 833, 1199
MaeIII GTNAC 2 cut(s) 259, 378
MalI GATC 3 cut(s) 671, 730, 1058
MboI GATC 3 cut(s) 669, 728, 1056
MboII GAAGA 7 cut(s) 131, 216, 386, 467, 1162, 1165, 1427
MhlI GDGCHC 3 cut(s) 117, 996, 1012
MlsI TGGCCA 2 cut(s) 447, 1247
MluCI AATT 3 cut(s) 702, 922, 1189
MluNI TGGCCA 2 cut(s) 447, 1247
MlyI GAGTC 2 cut(s) 970, 990
MmeI TCCRAC 2 cut(s) 744, 880
Mox20I TGGCCA 2 cut(s) 447, 1247
MscI TGGCCA 2 cut(s) 447, 1247
MseI TTAA 3 cut(s) 866, 1317, 1340
MslI CAYNNNNRTG 2 cut(s) 409, 1491
Msp20I TGGCCA 2 cut(s) 447, 1247
MspI CCGG 1 cut(s) 264
MspR9I CCNGG 1 cut(s) 1096
MvaI CCWGG 1 cut(s) 1096
MvnI CGCG 1 cut(s) 971
NcoI CCATGG 2 cut(s) 297, 1238
NdeI CATATG 1 cut(s) 322
NdeII GATC 3 cut(s) 669, 728, 1056
NlaIV GGNNCC 4 cut(s) 295, 303, 328, 1461
NmuCI GTSAC 1 cut(s) 259
NspI RCATGY 1 cut(s) 969
OliI CACNNNNGTG 1 cut(s) 1491
PaeR7I CTCGAG 1 cut(s) 978
PagI TCATGA 2 cut(s) 363, 1123
PciSI GCTCTTC 1 cut(s) 144
PfeI GAWTC 5 cut(s) 691, 853, 1269, 1347, 1401
PkrI GCNGC 5 cut(s) 233, 795, 818, 1093, 1164
PleI GAGTC 2 cut(s) 970, 989
PpsI GAGTC 2 cut(s) 970, 989
PshAI GACNNNNGTC 1 cut(s) 980
Psp124BI GAGCTC 2 cut(s) 117, 996
Psp6I CCWGG 1 cut(s) 1094
PspFI CCCAGC 1 cut(s) 1015
PspGI CCWGG 1 cut(s) 1094
PspN4I GGNNCC 4 cut(s) 295, 303, 328, 1461
PspPI GGNCC 2 cut(s) 766, 809
PspXI VCTCGAGB 1 cut(s) 978
RsaI GTAC 2 cut(s) 918, 1467
RsaNI GTAC 2 cut(s) 917, 1466
RseI CAYNNNNRTG 2 cut(s) 409, 1491
SacI GAGCTC 2 cut(s) 117, 996
SalI GTCGAC 1 cut(s) 973
SapI GCTCTTC 1 cut(s) 144
SaqAI TTAA 3 cut(s) 866, 1317, 1340
SatI GCNGC 5 cut(s) 232, 794, 817, 1092, 1163
Sau3AI GATC 3 cut(s) 669, 728, 1056
Sau96I GGNCC 2 cut(s) 766, 809
ScaI AGTACT 1 cut(s) 1467
SchI GAGTC 2 cut(s) 970, 990
ScrFI CCNGG 1 cut(s) 1096
SduI GDGCHC 3 cut(s) 117, 996, 1012
SfaNI GCATC 2 cut(s) 939, 1149
Sfr274I CTCGAG 1 cut(s) 978
SinI GGWCC 2 cut(s) 766, 809
SlaI CTCGAG 1 cut(s) 978
SmiMI CAYNNNNRTG 2 cut(s) 409, 1491
SmlI CTYRAG 3 cut(s) 277, 797, 978
SmoI CTYRAG 3 cut(s) 277, 797, 978
Sse9I AATT 3 cut(s) 702, 922, 1189
SsiI CCGC 2 cut(s) 516, 1046
SspMI CTAG 6 cut(s) 200, 209, 596, 726, 833, 1199
SstI GAGCTC 2 cut(s) 117, 996
StyD4I CCNGG 1 cut(s) 1094
StyI CCWWGG 3 cut(s) 297, 1238, 1290
TaaI ACNGT 4 cut(s) 26, 469, 565, 1338
TaqI TCGA 4 cut(s) 927, 974, 979, 1512
TasI AATT 3 cut(s) 702, 922, 1189
TatI WGTACW 2 cut(s) 916, 1465
TfiI GAWTC 5 cut(s) 691, 853, 1269, 1347, 1401
Tru1I TTAA 3 cut(s) 866, 1317, 1340
Tru9I TTAA 3 cut(s) 866, 1317, 1340
TscAI CASTG 3 cut(s) 424, 669, 679
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 5 cut(s) 231, 793, 816, 1091, 1162
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 7 cut(s) 45, 170, 393, 428, 1428, 1440, 1494
TspRI CASTG 3 cut(s) 424, 669, 679
VpaK11BI GGWCC 2 cut(s) 766, 809
XapI RAATTY 2 cut(s) 922, 1189
XceI RCATGY 1 cut(s) 969
XhoI CTCGAG 1 cut(s) 978
XmiI GTMKAC 1 cut(s) 974
XspI CTAG 6 cut(s) 200, 209, 596, 726, 833, 1199
ZrmI AGTACT 1 cut(s) 1467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.