Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0007089

Physical Location & Seq

Genomic Coordinates Reverse (-)

15118471 .. 15118692

Gene Structure 222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1067200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGTATGCAAATCTTGGTGGGTTTTACCTCCTGGCCTTGCCCTTGGGAGTTGTCTTAGCCTTCAAGATTGCACTTGGGCTCAGTGGATTGCTGGTAGGGTTCTTAATTGGAATCGTTGCATGCTTGATTTTGTTGCTAATTTTTGTTTTTATGATCAATTGGGAAGAAGAAGGTTGCAAGGCACAGACACTTGCATCCGTTAGTTGTCAAGAACCAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0008150 GO:0009987 GO:0010033 GO:0010035 GO:0010037 GO:0010119 GO:0015238 GO:0015691 GO:0015893 GO:0016020 GO:0022857 GO:0030001 GO:0035690 GO:0042221 GO:0042493 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051716 GO:0055085 GO:0065007 GO:0065008 GO:0070838 GO:0070887 GO:0071241 GO:0071244 GO:0071944 GO:0072347 GO:0072511 GO:1901700 GO:1901701 GO:1902456

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

74

Amino Acids

7.82

Weight (kDa)

4.5

Isoelectric Point (pI)

48.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22790
fragaria_vesca	FvH4_5g00900
malus_domestica	MD06G1067200.v1.1 MD06G1067400.v1.1 MD17G1137500.v1.1
prunus_persica	Prupe.5G082100_v2.0.a1
pyrus_communis	pycom06g06480
rosa_chinensis	RchiOBHm_Chr7g0200481 RchiOBHm_Chr7g0200881
rosa_laevigata	RLG00000003709 RLG00000003722
rosa_multiflora	Rmu_sc0000617.1_g000024 Rmu_sc0000708.1_g000018
rosa_roxburghii	Rroxscaffold_3G00255930
rosa_rugosa	Rorug07G0060600
rosa_samantha	Rh7AG186100 Rh7AG186200 Rh7BG189200 Rh7CG196300 Rh7CG197000 Rh7DG190200 Rh7DG192000 Rh7DG192100
rosa_wichuraiana	Rw7G016330 Rw7G016390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	30
AoxI	GGCC	1 cut(s)	33
BanII	GRGCYC	1 cut(s)	81
BciT130I	CCWGG	1 cut(s)	32
BclI	TGATCA	1 cut(s)	153
Bme1390I	CCNGG	1 cut(s)	32
BmrFI	CCNGG	1 cut(s)	32
BmsI	GCATC	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	42
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	42
BseGI	GGATG	1 cut(s)	194
BseMII	CTCAG	1 cut(s)	94
BshFI	GGCC	1 cut(s)	35
BsnI	GGCC	1 cut(s)	35
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	1 cut(s)	153
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	1 cut(s)	93
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	1 cut(s)	153
BssT1I	CCWWGG	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	2 cut(s)	55, 80
BstF5I	GGATG	1 cut(s)	194
BstKTI	GATC	1 cut(s)	156
BstMBI	GATC	1 cut(s)	153
BstNI	CCWGG	1 cut(s)	32
BstNSI	RCATGY	1 cut(s)	123
BstSCI	CCNGG	1 cut(s)	30
BsuRI	GGCC	1 cut(s)	35
BtsCI	GGATG	1 cut(s)	194
BtsIMutI	CAGTG	1 cut(s)	88
Cac8I	GCNNGC	1 cut(s)	121
CviAII	CATG	1 cut(s)	120
CviJI	RGCY	3 cut(s)	35, 59, 79
CviKI_1	RGCY	3 cut(s)	35, 59, 79
DdeI	CTNAG	2 cut(s)	55, 80
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	42
Eco24I	GRGCYC	1 cut(s)	81
EcoRII	CCWGG	1 cut(s)	30
EcoT14I	CCWWGG	1 cut(s)	42
EcoT38I	GRGCYC	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	42
FaeI	CATG	1 cut(s)	123
FaiI	YATR	3 cut(s)	6, 121, 152
FatI	CATG	1 cut(s)	119
FbaI	TGATCA	1 cut(s)	153
FokI	GGATG	1 cut(s)	181
FriOI	GRGCYC	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	35
Hin1II	CATG	1 cut(s)	123
HinfI	GANTC	1 cut(s)	111
Hpy188III	TCNNGA	2 cut(s)	64, 209
HpyAV	CCTTC	2 cut(s)	70, 164
HpyCH4V	TGCA	5 cut(s)	8, 71, 119, 177, 194
HpyF3I	CTNAG	2 cut(s)	55, 80
Hsp92II	CATG	1 cut(s)	123
Ksp22I	TGATCA	1 cut(s)	153
Kzo9I	GATC	1 cut(s)	153
LpnPI	CCDG	3 cut(s)	17, 44, 77
LweI	GCATC	1 cut(s)	203
MalI	GATC	1 cut(s)	155
MboI	GATC	1 cut(s)	153
MboII	GAAGA	2 cut(s)	176, 179
MfeI	CAATTG	1 cut(s)	157
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	3 cut(s)	105, 138, 157
MnlI	CCTC	1 cut(s)	38
MseI	TTAA	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	32
MunI	CAATTG	1 cut(s)	157
MvaI	CCWGG	1 cut(s)	32
NdeII	GATC	1 cut(s)	153
NlaIII	CATG	1 cut(s)	123
NspI	RCATGY	1 cut(s)	123
PaeI	GCATGC	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	111
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
SaqAI	TTAA	1 cut(s)	104
Sau3AI	GATC	1 cut(s)	153
ScrFI	CCNGG	1 cut(s)	32
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	2 cut(s)	30, 175
SfaNI	GCATC	1 cut(s)	203
SphI	GCATGC	1 cut(s)	123
Sse9I	AATT	3 cut(s)	105, 138, 157
StyD4I	CCNGG	1 cut(s)	30
StyI	CCWWGG	1 cut(s)	42
TasI	AATT	3 cut(s)	105, 138, 157
TfiI	GAWTC	1 cut(s)	111
Tru1I	TTAA	1 cut(s)	104
Tru9I	TTAA	1 cut(s)	104
TscAI	CASTG	1 cut(s)	88
TspGWI	ACGGA	1 cut(s)	187
TspRI	CASTG	1 cut(s)	88
XceI	RCATGY	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.