Rroxscaffold_3G00255930

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
50371703 .. 50373070
1368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00255930.1

Sequence Viewer

Length: 1368 bp
ATGAACTTGACGTGGTTTGCCAAAATAGCCATCACAACAGCTTTTCTAGGAAGACTCGGAGAGCTTCAACTGGCTGGTGGCACACTTGGTTTCACTTTCGCTAATGTCACCGGCTTCTCTGTCTTGAGTGGTCTCTGTGGTGCCATGGAGCCCGTATGTGGTCAAGCATATGGAGCCAAAAACATTAGGCTTCTCCACAAGACCCTTCTTATGACAACTTTCTTGTTACTTCTTGCAACTCTTCCTATTTCATTTTTGTGGCTCAGTGTTGACAAAATCCTCATCCATTTTGGCCAACAAGAAGATATTTCAACAGTTGCAAAGACCTACCTTTTCTATCTCTTACCAGACTTGGTTATTACCGCATTGCTTTGTCCCCTCAAAGCCTACTTGAACTCGCAAAGCATCACTGTTCCTTCCATGTTCTGCTCAGGTCTTGCTCTTGCCTGTCACATACCAATCAACATAGTGCTTGCAAACGCTAAAGGTATTGAGGGAGTTGCAATGTCTGTCTGGATCACTGACCTTATGGTTGTGATTCTACTTGCAATTTATGTGTGTGTGATTGAAGTTAAGGCAAAAGAAGGAAGGTGGAAAGAAGGCGGGTGGCTGGACCAAGGTGTTCGGGATTGGATTAGACTGCTCAAGCTTTGTGGACCTTGCTGCCTCACTACCTGCCTAGAATGGTGGTGCTATGAGATTTTGGTCCTGTTAACTGGCCGGCTTGCCAATGCCAAGCAGGCAGTCGGAGTTTTAGCCATCGTACTAAACTTCGACTACTTGCTATACTCGGTGATGCTGTCTCTGGCAACATGTGCGTCGACTCGAGTCTCAAATGAGCTCGGAGCAAACAGGGCAGGACCTGCATACCAATCTGCATTTGTGTCTCTGGCAGTGAGTTTGGTCTCCGGTTGTTTAGGTGGATTGGTGATGGTAGCAGCCAGGGGAAGTTGGGGGTCATTGTTTAGCCACGATAAGGGGATTGTAAGAGGTGTGAAGAAGATGATGCTGCTTATGGCTTTGGTGGAGGTTGTGAATTTCCCATTAGCTGTTTGCGGAGGGATTGTTCGAGGAACAGCGAGGCCATGGTTAGCTATGTATGCAAATCTTGGTGGATTCTACCTTCTGGCTTTGCCCTTGGGAGTTGTTTTAACCTTCAAGGTTAAACTCGGGCTGAGTGGACTATTGATAGGATTCTTGATTGGGATGGTTGCTTGCTTGATTTTGTTGCTGATCTTTGTTTTAAGAATCAACTGGGATGAAGAAGCGTGCAAAGCACAAAGACTTGCCTCACCTTCCTGTCAAGCACCAGAACTTAACAAACACGAACACCCCAAAAGCGTGGGGAGAGTCGATGCCGAAGTCTAA

Protein Analysis

455

Amino Acids

49.18

Weight (kDa)

8.77

Isoelectric Point (pI)

36.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 10 - 156 7.6e-31 MatE
MatE PF01554 220 - 382 3.6e-30 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 683, 871
AccB1I GGYRCC 1 cut(s) 140
AccI GTMKAC 1 cut(s) 821
AciI CCGC 3 cut(s) 363, 603, 1056
AclWI GGATC 1 cut(s) 524
AcoI YGGCCR 2 cut(s) 292, 718
AcsI RAATTY 1 cut(s) 1036
AfaI GTAC 1 cut(s) 765
AfiI CCNNNNNNNGG 2 cut(s) 158, 976
AflIII ACRYGT 1 cut(s) 812
AgsI TTSAA 5 cut(s) 68, 312, 394, 569, 1159
AjiI CACGTC 1 cut(s) 12
AjnI CCWGG 1 cut(s) 941
AloI GAACNNNNNNTCC 2 cut(s) 1050, 1082
AluBI AGCT 6 cut(s) 41, 64, 649, 841, 1049, 1094
AluI AGCT 6 cut(s) 41, 64, 649, 841, 1049, 1094
Alw21I GWGCWC 1 cut(s) 843
Alw26I GTCTC 5 cut(s) 137, 807, 835, 891, 910
AlwI GGATC 1 cut(s) 524
AlwNI CAGNNNCTG 1 cut(s) 863
Ama87I CYCGRG 2 cut(s) 825, 1169
AoxI GGCC 3 cut(s) 292, 718, 1082
ApeKI GCWGC 3 cut(s) 663, 938, 1009
ApoI RAATTY 1 cut(s) 1036
AspS9I GGNCC 4 cut(s) 613, 656, 706, 860
AsuHPI GGTGA 4 cut(s) 100, 805, 940, 1284
AvaI CYCGRG 2 cut(s) 825, 1169
AvaII GGWCC 4 cut(s) 613, 656, 706, 860
BalI TGGCCA 1 cut(s) 294
BanI GGYRCC 1 cut(s) 140
BanII GRGCYC 2 cut(s) 153, 843
BbsI GAAGAC 1 cut(s) 58
Bbv12I GWGCWC 1 cut(s) 843
BbvI GCAGC 3 cut(s) 650, 950, 996
BccI CCATC 4 cut(s) 38, 767, 925, 1201
BciT130I CCWGG 1 cut(s) 943
BcoDI GTCTC 5 cut(s) 137, 807, 835, 891, 910
BfaI CTAG 2 cut(s) 47, 680
BfuAI ACCTGC 2 cut(s) 683, 871
BglI GCCNNNNNGGC 1 cut(s) 740
BisI GCNGC 3 cut(s) 664, 939, 1010
BlsI GCNGC 3 cut(s) 665, 940, 1011
Bme1390I CCNGG 1 cut(s) 943
Bme18I GGWCC 4 cut(s) 613, 656, 706, 860
BmeT110I CYCGRG 2 cut(s) 825, 1169
BmgBI CACGTC 1 cut(s) 12
BmgT120I GGNCC 4 cut(s) 613, 656, 706, 860
BmiI GGNNCC 3 cut(s) 142, 150, 175
BmrFI CCNGG 1 cut(s) 943
BmrI ACTGGG 1 cut(s) 1264
BmsI GCATC 4 cut(s) 414, 786, 996, 1345
BmuI ACTGGG 1 cut(s) 1264
BoxI GACNNNNGTC 1 cut(s) 827
BpiI GAAGAC 1 cut(s) 58
Bpu10I CCTNAGC 1 cut(s) 430
BpuEI CTTGAG 2 cut(s) 145, 629
BsaI GGTCTC 2 cut(s) 137, 910
BsaJI CCNNGG 5 cut(s) 144, 616, 942, 1085, 1137
BsaWI WCCGGW 1 cut(s) 908
BsaXI ACNNNNNCTCC 2 cut(s) 1050, 1080
Bsc4I CCNNNNNNNGG 2 cut(s) 158, 976
Bse118I RCCGGY 2 cut(s) 110, 720
Bse1I ACTGG 3 cut(s) 75, 721, 1259
Bse3DI GCAATG 2 cut(s) 365, 510
BseBI CCWGG 1 cut(s) 943
BseDI CCNNGG 5 cut(s) 144, 616, 942, 1085, 1137
BseGI GGATG 3 cut(s) 282, 1212, 1264
BseLI CCNNNNNNNGG 2 cut(s) 158, 976
BseMI GCAATG 2 cut(s) 365, 510
BseMII CTCAG 3 cut(s) 277, 444, 1166
BseNI ACTGG 3 cut(s) 75, 721, 1259
BseXI GCAGC 3 cut(s) 650, 950, 996
BshFI GGCC 3 cut(s) 294, 720, 1084
BshNI GGYRCC 1 cut(s) 140
BsiHKAI GWGCWC 1 cut(s) 843
BsiHKCI CYCGRG 2 cut(s) 825, 1169
BsiSI CCGG 3 cut(s) 111, 721, 909
BslFI GGGAC 1 cut(s) 360
BslI CCNNNNNNNGG 2 cut(s) 158, 976
BsmAI GTCTC 5 cut(s) 137, 807, 835, 891, 910
BsmFI GGGAC 1 cut(s) 360
BsnI GGCC 3 cut(s) 294, 720, 1084
Bso31I GGTCTC 2 cut(s) 137, 910
BsoBI CYCGRG 2 cut(s) 825, 1169
Bsp1286I GDGCHC 2 cut(s) 153, 843
Bsp143I GATC 2 cut(s) 516, 1233
Bsp19I CCATGG 2 cut(s) 144, 1085
BspACI CCGC 3 cut(s) 363, 603, 1056
BspANI GGCC 3 cut(s) 294, 720, 1084
BspCNI CTCAG 3 cut(s) 276, 443, 1167
BspLI GGNNCC 3 cut(s) 142, 150, 175
BspMI ACCTGC 2 cut(s) 683, 871
BspPI GGATC 1 cut(s) 524
BspT107I GGYRCC 1 cut(s) 140
BspTNI GGTCTC 2 cut(s) 137, 910
BsrDI GCAATG 2 cut(s) 365, 510
BsrFI RCCGGY 2 cut(s) 110, 720
BsrI ACTGG 3 cut(s) 75, 721, 1259
BssAI RCCGGY 2 cut(s) 110, 720
BssECI CCNNGG 5 cut(s) 144, 616, 942, 1085, 1137
BssMI GATC 2 cut(s) 516, 1233
BssT1I CCWWGG 4 cut(s) 144, 616, 1085, 1137
Bst2UI CCWGG 1 cut(s) 943
Bst4CI ACNGT 2 cut(s) 316, 412
Bst6I CTCTTC 1 cut(s) 246
BstAPI GCANNNNNTGC 2 cut(s) 815, 863
BstC8I GCNNGC 6 cut(s) 474, 722, 726, 741, 1216, 1270
BstDEI CTNAG 3 cut(s) 263, 430, 1175
BstDSI CCRYGG 2 cut(s) 144, 1085
BstF5I GGATG 3 cut(s) 282, 1212, 1264
BstKTI GATC 2 cut(s) 519, 1236
BstMAI GTCTC 5 cut(s) 137, 807, 835, 891, 910
BstMBI GATC 2 cut(s) 516, 1233
BstMWI GCNNNNNNNGC 8 cut(s) 26, 173, 740, 815, 854, 863, 1100, 1274
BstNI CCWGG 1 cut(s) 943
BstNSI RCATGY 1 cut(s) 816
BstPAI GACNNNNGTC 1 cut(s) 827
BstSCI CCNGG 1 cut(s) 941
BstV1I GCAGC 3 cut(s) 650, 950, 996
BstV2I GAAGAC 1 cut(s) 58
BstXI CCANNNNNNTGG 1 cut(s) 1342
BsuRI GGCC 3 cut(s) 294, 720, 1084
BtgI CCRYGG 2 cut(s) 144, 1085
BtrI CACGTC 1 cut(s) 12
BtsCI GGATG 3 cut(s) 282, 1212, 1264
BtsI GCAGTG 1 cut(s) 900
BtsIMutI CAGTG 4 cut(s) 271, 408, 519, 900
BveI ACCTGC 2 cut(s) 683, 871
Cac8I GCNNGC 6 cut(s) 474, 722, 726, 741, 1216, 1270
CaiI CAGNNNCTG 1 cut(s) 863
Cfr10I RCCGGY 2 cut(s) 110, 720
Cfr13I GGNCC 4 cut(s) 613, 656, 706, 860
CseI GACGC 1 cut(s) 807
Csp6I GTAC 1 cut(s) 764
CspCI CAANNNNNGTGG 2 cut(s) 634, 669
CviAII CATG 4 cut(s) 145, 421, 813, 1086
CviQI GTAC 1 cut(s) 764
DdeI CTNAG 3 cut(s) 263, 430, 1175
DpnI GATC 2 cut(s) 518, 1235
DpnII GATC 2 cut(s) 516, 1233
EaeI YGGCCR 2 cut(s) 292, 718
Eam1104I CTCTTC 1 cut(s) 246
EarI CTCTTC 1 cut(s) 246
Ecl136II GAGCTC 1 cut(s) 841
Eco130I CCWWGG 4 cut(s) 144, 616, 1085, 1137
Eco24I GRGCYC 2 cut(s) 153, 843
Eco31I GGTCTC 2 cut(s) 137, 910
Eco47I GGWCC 4 cut(s) 613, 656, 706, 860
Eco53kI GAGCTC 1 cut(s) 841
Eco88I CYCGRG 2 cut(s) 825, 1169
EcoICRI GAGCTC 1 cut(s) 841
EcoO109I RGGNCCY 1 cut(s) 860
EcoRII CCWGG 1 cut(s) 941
EcoT14I CCWWGG 4 cut(s) 144, 616, 1085, 1137
EcoT38I GRGCYC 2 cut(s) 153, 843
ErhI CCWWGG 4 cut(s) 144, 616, 1085, 1137
FaeI CATG 4 cut(s) 148, 424, 816, 1089
FaqI GGGAC 1 cut(s) 360
FatI CATG 4 cut(s) 144, 420, 812, 1085
FauI CCCGC 1 cut(s) 596
FauNDI CATATG 1 cut(s) 169
FblI GTMKAC 1 cut(s) 821
Fnu4HI GCNGC 3 cut(s) 664, 939, 1010
FokI GGATG 3 cut(s) 269, 1219, 1271
FriOI GRGCYC 2 cut(s) 153, 843
Fsp4HI GCNGC 3 cut(s) 664, 939, 1010
FspBI CTAG 2 cut(s) 47, 680
GluI GCNGC 3 cut(s) 664, 939, 1010
HaeIII GGCC 3 cut(s) 294, 720, 1084
HapII CCGG 3 cut(s) 111, 721, 909
HgaI GACGC 1 cut(s) 807
Hin1II CATG 4 cut(s) 148, 424, 816, 1089
HincII GTYRAC 3 cut(s) 271, 714, 822
HindII GTYRAC 3 cut(s) 271, 714, 822
HindIII AAGCTT 1 cut(s) 647
HinfI GANTC 8 cut(s) 54, 538, 823, 828, 1116, 1194, 1248, 1350
HpaI GTTAAC 1 cut(s) 714
HpaII CCGG 3 cut(s) 111, 721, 909
HphI GGTGA 4 cut(s) 100, 805, 940, 1284
Hpy166II GTNNAC 5 cut(s) 271, 656, 714, 822, 1181
Hpy188I TCNGA 3 cut(s) 59, 749, 845
Hpy188III TCNNGA 4 cut(s) 124, 514, 626, 1198
Hpy8I GTNNAC 5 cut(s) 271, 656, 714, 822, 1181
Hpy99I CGWCG 1 cut(s) 823
HpyAV CCTTC 8 cut(s) 215, 426, 578, 582, 593, 1133, 1165, 1305
HpyCH4III ACNGT 2 cut(s) 316, 412
HpyCH4IV ACGT 1 cut(s) 11
HpyCH4V TGCA 9 cut(s) 236, 320, 476, 503, 548, 866, 878, 1103, 1272
HpyF10VI GCNNNNNNNGC 8 cut(s) 26, 173, 740, 815, 854, 863, 1100, 1274
HpyF3I CTNAG 3 cut(s) 263, 430, 1175
HpySE526I ACGT 1 cut(s) 11
Hsp92II CATG 4 cut(s) 148, 424, 816, 1089
KroI GCCGGC 1 cut(s) 720
KroNI GCCGGC 1 cut(s) 722
KspAI GTTAAC 1 cut(s) 714
Kzo9I GATC 2 cut(s) 516, 1233
LmnI GCTCC 3 cut(s) 148, 173, 845
Lsp1109I GCAGC 3 cut(s) 650, 950, 996
LweI GCATC 4 cut(s) 414, 786, 996, 1345
MaeI CTAG 2 cut(s) 47, 680
MaeII ACGT 1 cut(s) 11
MaeIII GTNAC 3 cut(s) 106, 225, 449
MalI GATC 2 cut(s) 518, 1235
MboI GATC 2 cut(s) 516, 1233
MboII GAAGA 6 cut(s) 63, 233, 314, 1009, 1012, 1274
MhlI GDGCHC 2 cut(s) 153, 843
MlsI TGGCCA 1 cut(s) 294
MluCI AATT 2 cut(s) 549, 1036
MluNI TGGCCA 1 cut(s) 294
MlyI GAGTC 4 cut(s) 48, 817, 837, 1359
MmeI TCCRAC 1 cut(s) 727
Mox20I TGGCCA 1 cut(s) 294
MroNI GCCGGC 1 cut(s) 720
MscI TGGCCA 1 cut(s) 294
MseI TTAA 6 cut(s) 573, 713, 1151, 1164, 1244, 1317
MslI CAYNNNNRTG 1 cut(s) 256
Msp20I TGGCCA 1 cut(s) 294
MspI CCGG 3 cut(s) 111, 721, 909
MspR9I CCNGG 1 cut(s) 943
MvaI CCWGG 1 cut(s) 943
MwoI GCNNNNNNNGC 8 cut(s) 26, 173, 740, 815, 854, 863, 1100, 1274
NaeI GCCGGC 1 cut(s) 722
NcoI CCATGG 2 cut(s) 144, 1085
NdeI CATATG 1 cut(s) 169
NdeII GATC 2 cut(s) 516, 1233
NgoMIV GCCGGC 1 cut(s) 720
NlaIII CATG 4 cut(s) 148, 424, 816, 1089
NlaIV GGNNCC 3 cut(s) 142, 150, 175
NmuCI GTSAC 2 cut(s) 106, 449
NspI RCATGY 1 cut(s) 816
PaeR7I CTCGAG 1 cut(s) 825
PciI ACATGT 1 cut(s) 812
PdiI GCCGGC 1 cut(s) 722
PfeI GAWTC 4 cut(s) 538, 1116, 1194, 1248
PkrI GCNGC 3 cut(s) 665, 940, 1011
PleI GAGTC 4 cut(s) 48, 817, 836, 1358
PpsI GAGTC 4 cut(s) 48, 817, 836, 1358
PpuMI RGGWCCY 1 cut(s) 860
PscI ACATGT 1 cut(s) 812
PshAI GACNNNNGTC 1 cut(s) 827
Psp124BI GAGCTC 1 cut(s) 843
Psp5II RGGWCCY 1 cut(s) 860
Psp6I CCWGG 1 cut(s) 941
PspGI CCWGG 1 cut(s) 941
PspN4I GGNNCC 3 cut(s) 142, 150, 175
PspPI GGNCC 4 cut(s) 613, 656, 706, 860
PspPPI RGGWCCY 1 cut(s) 860
PspXI VCTCGAGB 1 cut(s) 825
PstNI CAGNNNCTG 1 cut(s) 863
RsaI GTAC 1 cut(s) 765
RsaNI GTAC 1 cut(s) 764
RseI CAYNNNNRTG 1 cut(s) 256
SacI GAGCTC 1 cut(s) 843
SalI GTCGAC 1 cut(s) 820
SaqAI TTAA 6 cut(s) 573, 713, 1151, 1164, 1244, 1317
SatI GCNGC 3 cut(s) 664, 939, 1010
Sau3AI GATC 2 cut(s) 516, 1233
Sau96I GGNCC 4 cut(s) 613, 656, 706, 860
SchI GAGTC 4 cut(s) 48, 817, 837, 1359
ScrFI CCNGG 1 cut(s) 943
SduI GDGCHC 2 cut(s) 153, 843
SfaNI GCATC 4 cut(s) 414, 786, 996, 1345
Sfr274I CTCGAG 1 cut(s) 825
SinI GGWCC 4 cut(s) 613, 656, 706, 860
SlaI CTCGAG 1 cut(s) 825
SmiMI CAYNNNNRTG 1 cut(s) 256
SmlI CTYRAG 3 cut(s) 124, 644, 825
SmoI CTYRAG 3 cut(s) 124, 644, 825
Sse9I AATT 2 cut(s) 549, 1036
SsiI CCGC 3 cut(s) 363, 603, 1056
SspMI CTAG 2 cut(s) 47, 680
SstI GAGCTC 1 cut(s) 843
StyD4I CCNGG 1 cut(s) 941
StyI CCWWGG 4 cut(s) 144, 616, 1085, 1137
TaaI ACNGT 2 cut(s) 316, 412
TaiI ACGT 1 cut(s) 14
TaqI TCGA 5 cut(s) 774, 821, 826, 1069, 1353
TasI AATT 2 cut(s) 549, 1036
TfiI GAWTC 4 cut(s) 538, 1116, 1194, 1248
Tru1I TTAA 6 cut(s) 573, 713, 1151, 1164, 1244, 1317
Tru9I TTAA 6 cut(s) 573, 713, 1151, 1164, 1244, 1317
TscAI CASTG 4 cut(s) 271, 415, 526, 900
TseFI GTSAC 2 cut(s) 106, 449
TseI GCWGC 3 cut(s) 663, 938, 1009
Tsp45I GTSAC 2 cut(s) 106, 449
TspDTI ATGAA 3 cut(s) 17, 240, 1275
TspRI CASTG 4 cut(s) 271, 415, 526, 900
VpaK11BI GGWCC 4 cut(s) 613, 656, 706, 860
XapI RAATTY 1 cut(s) 1036
XceI RCATGY 1 cut(s) 816
XhoI CTCGAG 1 cut(s) 825
XmiI GTMKAC 1 cut(s) 821
XspI CTAG 2 cut(s) 47, 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.