Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0007089

Physical Location & Seq

Genomic Coordinates Forward (+)

16513068 .. 16514291

Gene Structure 1224 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG186200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGGAGCCCGTATGTGGTCAAGCATATGGAGCCAAAAACATTAGGCTTCTCCACAAGACCCTTCTTATGACAACTTTCTTGTTACTTCTTGCAACTCTTCCTATTTCATTTTTGTGGCTCAGTGTTGACAAAATCCTCATCCATTTTGGCCAACAAGAAGATATTTCAACAGTTGCAAAGACATACCTTTTCTATCTCCTACCAGACTTGGTTATTACCGCATTGCTTTGTCCCCTCAAAGCCTACTTGAACTCACAAAGCATCACGGTTCCTTCCATGTTCTGCTCAGGTCTTGCTCTTGCCTTTCACATACCAATCAACATAGTGCTTGCAAACGCTAAAGGTATTGAGGGAGTTGCAATGTCTGTCTGGATCACTGACCTTATGGTTGTGATTCTACTTGCAATTTATGTGTGTGTGATTGAAGTTAAGGCAAAAGAAGGAAGGTGGAAAGAAGGCGGGTGGCTGGACCAAGGTGTTTGGGATTGGATTAGACTGCTCAAGCTTTGTGGACCTTGCTGCCTTACTACCTGCCTAGAATGGTGGTGCTATGAGATCCTGGTCCTGTTAACTGGCCGGCTTGCCAATGCCAAGCAGGCAGTCGGAGTTTTAGCCATCGTACTAAACTTCGACTACTTGCTATACTCGGTGATGCTGTCTCTGGCAACATGTGCGTCGACTCGAGTCTCAAATGAGCTCGGAGCAAACAGGGCAGGACCTGCATACCAATCTGCATTTGTGTCTCTGGCAGTGAGTATGGTCTCTGGTTGTTTAGGTGGATTGGTGATGGTAGCAGCCAGGGGAAGTTGGGGGTCATTGTTTAGCCGCGATAAGGGGATTGTAAGAGGTGTGAAGAAGATGATGCTGCTTATGGCTGTGGTGGAGGTTGTGAATTTCCCATTAGCTGTTTGCGGAGGGATTGTTCGAGGAACAGCGAGGCCATGGTTGGCTATGTATGCAAATCTTGGTGGATTCTACCTTCTGGCTTTGCCCTTGGGAGTTGTTTTAGCCTTCAAGGTTAAACTCGGGCTGAGTGGACTATTGGTAGGATTCTTGATTGGGATGGTTGCTTGCTTGATTTTGTTGCTGATCTTTGTTTTAAGAATCAACTGGGATGAAGAAGCGTGCAAAGCACAAAGACTTGCCTCACTTTCCTGTCAAGCACCAGAACTTAACAAACACAAACACCACAAAAGCGTGGGGAGAGTCGATGCCGAAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0008150 GO:0009987 GO:0010033 GO:0010035 GO:0010037 GO:0010119 GO:0015238 GO:0015691 GO:0015893 GO:0016020 GO:0022857 GO:0030001 GO:0035690 GO:0042221 GO:0042493 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051716 GO:0055085 GO:0065007 GO:0065008 GO:0070838 GO:0070887 GO:0071241 GO:0071244 GO:0071944 GO:0072347 GO:0072511 GO:1901700 GO:1901701 GO:1902456

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

407

Amino Acids

44.37

Weight (kDa)

8.91

Isoelectric Point (pI)

37.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	1 - 108	3.1e-21	MatE
MatE	PF01554	172 - 334	1.9e-29	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22790
fragaria_vesca	FvH4_5g00900
malus_domestica	MD06G1067200.v1.1 MD06G1067400.v1.1 MD17G1137500.v1.1
prunus_persica	Prupe.5G082100_v2.0.a1
pyrus_communis	pycom06g06480
rosa_chinensis	RchiOBHm_Chr7g0200481 RchiOBHm_Chr7g0200881
rosa_laevigata	RLG00000003709 RLG00000003722
rosa_multiflora	Rmu_sc0000617.1_g000024 Rmu_sc0000708.1_g000018
rosa_roxburghii	Rroxscaffold_3G00255930
rosa_rugosa	Rorug07G0060600
rosa_samantha	Rh7AG186100 Rh7AG186200 Rh7BG189200 Rh7CG196300 Rh7CG197000 Rh7DG190200 Rh7DG192000 Rh7DG192100
rosa_wichuraiana	Rw7G016330 Rw7G016390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	539, 727
AccI	GTMKAC	1 cut(s)	677
AccII	CGCG	1 cut(s)	828
AciI	CCGC	4 cut(s)	219, 459, 826, 912
AclWI	GGATC	2 cut(s)	380, 550
AcoI	YGGCCR	2 cut(s)	148, 574
AcsI	RAATTY	1 cut(s)	892
AfaI	GTAC	1 cut(s)	621
AfiI	CCNNNNNNNGG	2 cut(s)	14, 832
AflIII	ACRYGT	1 cut(s)	668
AgsI	TTSAA	4 cut(s)	168, 250, 425, 1015
AjnI	CCWGG	2 cut(s)	558, 797
AloI	GAACNNNNNNTCC	2 cut(s)	906, 938
AluBI	AGCT	3 cut(s)	505, 697, 905
AluI	AGCT	3 cut(s)	505, 697, 905
Alw21I	GWGCWC	1 cut(s)	699
Alw26I	GTCTC	4 cut(s)	663, 691, 747, 766
AlwI	GGATC	2 cut(s)	380, 550
AlwNI	CAGNNNCTG	1 cut(s)	719
Ama87I	CYCGRG	2 cut(s)	681, 1025
AoxI	GGCC	3 cut(s)	148, 574, 938
ApeKI	GCWGC	3 cut(s)	519, 794, 865
ApoI	RAATTY	1 cut(s)	892
AspS9I	GGNCC	4 cut(s)	469, 512, 562, 716
AsuHPI	GGTGA	2 cut(s)	661, 796
AvaI	CYCGRG	2 cut(s)	681, 1025
AvaII	GGWCC	4 cut(s)	469, 512, 562, 716
BalI	TGGCCA	1 cut(s)	150
BanII	GRGCYC	2 cut(s)	9, 699
Bbv12I	GWGCWC	1 cut(s)	699
BbvI	GCAGC	3 cut(s)	506, 806, 852
BccI	CCATC	3 cut(s)	623, 781, 1057
BciT130I	CCWGG	2 cut(s)	560, 799
BcoDI	GTCTC	4 cut(s)	663, 691, 747, 766
BfaI	CTAG	1 cut(s)	536
BfuAI	ACCTGC	2 cut(s)	539, 727
BglI	GCCNNNNNGGC	1 cut(s)	596
BisI	GCNGC	4 cut(s)	520, 795, 826, 866
BlsI	GCNGC	4 cut(s)	521, 796, 827, 867
Bme1390I	CCNGG	2 cut(s)	560, 799
Bme18I	GGWCC	4 cut(s)	469, 512, 562, 716
BmeT110I	CYCGRG	2 cut(s)	681, 1025
BmgT120I	GGNCC	4 cut(s)	469, 512, 562, 716
BmiI	GGNNCC	3 cut(s)	6, 31, 270
BmrFI	CCNGG	2 cut(s)	560, 799
BmrI	ACTGGG	1 cut(s)	1120
BmsI	GCATC	4 cut(s)	270, 642, 852, 1201
BmuI	ACTGGG	1 cut(s)	1120
BoxI	GACNNNNGTC	1 cut(s)	683
Bpu10I	CCTNAGC	1 cut(s)	286
BpuEI	CTTGAG	1 cut(s)	485
BsaI	GGTCTC	1 cut(s)	766
BsaJI	CCNNGG	4 cut(s)	472, 798, 941, 993
BsaXI	ACNNNNNCTCC	2 cut(s)	906, 936
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 832
Bse118I	RCCGGY	1 cut(s)	576
Bse1I	ACTGG	2 cut(s)	577, 1115
Bse3DI	GCAATG	2 cut(s)	221, 366
BseBI	CCWGG	2 cut(s)	560, 799
BseDI	CCNNGG	4 cut(s)	472, 798, 941, 993
BseGI	GGATG	3 cut(s)	138, 1068, 1120
BseLI	CCNNNNNNNGG	2 cut(s)	14, 832
BseMI	GCAATG	2 cut(s)	221, 366
BseMII	CTCAG	3 cut(s)	133, 300, 1022
BseNI	ACTGG	2 cut(s)	577, 1115
BseXI	GCAGC	3 cut(s)	506, 806, 852
Bsh1236I	CGCG	1 cut(s)	828
BshFI	GGCC	3 cut(s)	150, 576, 940
BsiHKAI	GWGCWC	1 cut(s)	699
BsiHKCI	CYCGRG	2 cut(s)	681, 1025
BsiSI	CCGG	1 cut(s)	577
BslFI	GGGAC	1 cut(s)	216
BslI	CCNNNNNNNGG	2 cut(s)	14, 832
BsmAI	GTCTC	4 cut(s)	663, 691, 747, 766
BsmFI	GGGAC	1 cut(s)	216
BsnI	GGCC	3 cut(s)	150, 576, 940
Bso31I	GGTCTC	1 cut(s)	766
BsoBI	CYCGRG	2 cut(s)	681, 1025
Bsp1286I	GDGCHC	2 cut(s)	9, 699
Bsp143I	GATC	3 cut(s)	372, 555, 1089
Bsp19I	CCATGG	1 cut(s)	941
BspACI	CCGC	4 cut(s)	219, 459, 826, 912
BspANI	GGCC	3 cut(s)	150, 576, 940
BspCNI	CTCAG	3 cut(s)	132, 299, 1023
BspFNI	CGCG	1 cut(s)	828
BspLI	GGNNCC	3 cut(s)	6, 31, 270
BspMI	ACCTGC	2 cut(s)	539, 727
BspPI	GGATC	2 cut(s)	380, 550
BspTNI	GGTCTC	1 cut(s)	766
BsrDI	GCAATG	2 cut(s)	221, 366
BsrFI	RCCGGY	1 cut(s)	576
BsrI	ACTGG	2 cut(s)	577, 1115
BssAI	RCCGGY	1 cut(s)	576
BssECI	CCNNGG	4 cut(s)	472, 798, 941, 993
BssMI	GATC	3 cut(s)	372, 555, 1089
BssT1I	CCWWGG	3 cut(s)	472, 941, 993
Bst2UI	CCWGG	2 cut(s)	560, 799
Bst4CI	ACNGT	2 cut(s)	172, 268
Bst6I	CTCTTC	1 cut(s)	102
BstAPI	GCANNNNNTGC	2 cut(s)	671, 719
BstC8I	GCNNGC	6 cut(s)	330, 578, 582, 597, 1072, 1126
BstDEI	CTNAG	3 cut(s)	119, 286, 1031
BstDSI	CCRYGG	1 cut(s)	941
BstF5I	GGATG	3 cut(s)	138, 1068, 1120
BstFNI	CGCG	1 cut(s)	828
BstKTI	GATC	3 cut(s)	375, 558, 1092
BstMAI	GTCTC	4 cut(s)	663, 691, 747, 766
BstMBI	GATC	3 cut(s)	372, 555, 1089
BstMWI	GCNNNNNNNGC	7 cut(s)	29, 596, 671, 710, 719, 956, 1130
BstNI	CCWGG	2 cut(s)	560, 799
BstNSI	RCATGY	1 cut(s)	672
BstPAI	GACNNNNGTC	1 cut(s)	683
BstSCI	CCNGG	2 cut(s)	558, 797
BstUI	CGCG	1 cut(s)	828
BstV1I	GCAGC	3 cut(s)	506, 806, 852
BstX2I	RGATCY	1 cut(s)	555
BstYI	RGATCY	1 cut(s)	555
BsuRI	GGCC	3 cut(s)	150, 576, 940
BtgI	CCRYGG	1 cut(s)	941
BtsCI	GGATG	3 cut(s)	138, 1068, 1120
BtsI	GCAGTG	1 cut(s)	756
BtsIMutI	CAGTG	3 cut(s)	127, 375, 756
BveI	ACCTGC	2 cut(s)	539, 727
Cac8I	GCNNGC	6 cut(s)	330, 578, 582, 597, 1072, 1126
CaiI	CAGNNNCTG	1 cut(s)	719
Cfr10I	RCCGGY	1 cut(s)	576
Cfr13I	GGNCC	4 cut(s)	469, 512, 562, 716
CseI	GACGC	1 cut(s)	663
Csp6I	GTAC	1 cut(s)	620
CspCI	CAANNNNNGTGG	2 cut(s)	490, 525
CviAII	CATG	3 cut(s)	277, 669, 942
CviQI	GTAC	1 cut(s)	620
DdeI	CTNAG	3 cut(s)	119, 286, 1031
DpnI	GATC	3 cut(s)	374, 557, 1091
DpnII	GATC	3 cut(s)	372, 555, 1089
EaeI	YGGCCR	2 cut(s)	148, 574
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Ecl136II	GAGCTC	1 cut(s)	697
Eco130I	CCWWGG	3 cut(s)	472, 941, 993
Eco24I	GRGCYC	2 cut(s)	9, 699
Eco31I	GGTCTC	1 cut(s)	766
Eco47I	GGWCC	4 cut(s)	469, 512, 562, 716
Eco53kI	GAGCTC	1 cut(s)	697
Eco88I	CYCGRG	2 cut(s)	681, 1025
EcoICRI	GAGCTC	1 cut(s)	697
EcoO109I	RGGNCCY	1 cut(s)	716
EcoRII	CCWGG	2 cut(s)	558, 797
EcoT14I	CCWWGG	3 cut(s)	472, 941, 993
EcoT38I	GRGCYC	2 cut(s)	9, 699
ErhI	CCWWGG	3 cut(s)	472, 941, 993
FaeI	CATG	3 cut(s)	280, 672, 945
FaqI	GGGAC	1 cut(s)	216
FatI	CATG	3 cut(s)	276, 668, 941
FauI	CCCGC	1 cut(s)	452
FauNDI	CATATG	1 cut(s)	25
FblI	GTMKAC	1 cut(s)	677
Fnu4HI	GCNGC	4 cut(s)	520, 795, 826, 866
FokI	GGATG	3 cut(s)	125, 1075, 1127
FriOI	GRGCYC	2 cut(s)	9, 699
Fsp4HI	GCNGC	4 cut(s)	520, 795, 826, 866
FspBI	CTAG	1 cut(s)	536
GluI	GCNGC	4 cut(s)	520, 795, 826, 866
HaeIII	GGCC	3 cut(s)	150, 576, 940
HapII	CCGG	1 cut(s)	577
HgaI	GACGC	1 cut(s)	663
Hin1II	CATG	3 cut(s)	280, 672, 945
HincII	GTYRAC	3 cut(s)	127, 570, 678
HindII	GTYRAC	3 cut(s)	127, 570, 678
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	7 cut(s)	394, 679, 684, 972, 1050, 1104, 1206
HpaI	GTTAAC	1 cut(s)	570
HpaII	CCGG	1 cut(s)	577
HphI	GGTGA	2 cut(s)	661, 796
Hpy166II	GTNNAC	5 cut(s)	127, 512, 570, 678, 1037
Hpy188I	TCNGA	2 cut(s)	605, 701
Hpy188III	TCNNGA	2 cut(s)	370, 1054
Hpy8I	GTNNAC	5 cut(s)	127, 512, 570, 678, 1037
Hpy99I	CGWCG	1 cut(s)	679
HpyAV	CCTTC	7 cut(s)	71, 282, 434, 438, 449, 989, 1021
HpyCH4III	ACNGT	2 cut(s)	172, 268
HpyCH4V	TGCA	9 cut(s)	92, 176, 332, 359, 404, 722, 734, 959, 1128
HpyF10VI	GCNNNNNNNGC	7 cut(s)	29, 596, 671, 710, 719, 956, 1130
HpyF3I	CTNAG	3 cut(s)	119, 286, 1031
Hsp92II	CATG	3 cut(s)	280, 672, 945
KroI	GCCGGC	1 cut(s)	576
KroNI	GCCGGC	1 cut(s)	578
KspAI	GTTAAC	1 cut(s)	570
Kzo9I	GATC	3 cut(s)	372, 555, 1089
LmnI	GCTCC	3 cut(s)	4, 29, 701
Lsp1109I	GCAGC	3 cut(s)	506, 806, 852
LweI	GCATC	4 cut(s)	270, 642, 852, 1201
MaeI	CTAG	1 cut(s)	536
MaeIII	GTNAC	1 cut(s)	81
MalI	GATC	3 cut(s)	374, 557, 1091
MboI	GATC	3 cut(s)	372, 555, 1089
MboII	GAAGA	5 cut(s)	89, 170, 865, 868, 1130
MflI	RGATCY	1 cut(s)	555
MhlI	GDGCHC	2 cut(s)	9, 699
MlsI	TGGCCA	1 cut(s)	150
MluCI	AATT	2 cut(s)	405, 892
MluNI	TGGCCA	1 cut(s)	150
MlyI	GAGTC	3 cut(s)	673, 693, 1215
MmeI	TCCRAC	1 cut(s)	583
MnlI	CCTC	9 cut(s)	146, 245, 343, 839, 877, 908, 920, 930, 1156
Mox20I	TGGCCA	1 cut(s)	150
MroNI	GCCGGC	1 cut(s)	576
MscI	TGGCCA	1 cut(s)	150
MseI	TTAA	5 cut(s)	429, 569, 1020, 1100, 1173
MslI	CAYNNNNRTG	1 cut(s)	112
Msp20I	TGGCCA	1 cut(s)	150
MspI	CCGG	1 cut(s)	577
MspR9I	CCNGG	2 cut(s)	560, 799
MvaI	CCWGG	2 cut(s)	560, 799
MvnI	CGCG	1 cut(s)	828
MwoI	GCNNNNNNNGC	7 cut(s)	29, 596, 671, 710, 719, 956, 1130
NaeI	GCCGGC	1 cut(s)	578
NcoI	CCATGG	1 cut(s)	941
NdeI	CATATG	1 cut(s)	25
NdeII	GATC	3 cut(s)	372, 555, 1089
NgoMIV	GCCGGC	1 cut(s)	576
NlaIII	CATG	3 cut(s)	280, 672, 945
NlaIV	GGNNCC	3 cut(s)	6, 31, 270
NspI	RCATGY	1 cut(s)	672
PaeR7I	CTCGAG	1 cut(s)	681
PciI	ACATGT	1 cut(s)	668
PdiI	GCCGGC	1 cut(s)	578
PfeI	GAWTC	4 cut(s)	394, 972, 1050, 1104
PkrI	GCNGC	4 cut(s)	521, 796, 827, 867
PleI	GAGTC	3 cut(s)	673, 692, 1214
PpsI	GAGTC	3 cut(s)	673, 692, 1214
PpuMI	RGGWCCY	1 cut(s)	716
PscI	ACATGT	1 cut(s)	668
PshAI	GACNNNNGTC	1 cut(s)	683
Psp124BI	GAGCTC	1 cut(s)	699
Psp5II	RGGWCCY	1 cut(s)	716
Psp6I	CCWGG	2 cut(s)	558, 797
PspGI	CCWGG	2 cut(s)	558, 797
PspN4I	GGNNCC	3 cut(s)	6, 31, 270
PspPI	GGNCC	4 cut(s)	469, 512, 562, 716
PspPPI	RGGWCCY	1 cut(s)	716
PspXI	VCTCGAGB	1 cut(s)	681
PstNI	CAGNNNCTG	1 cut(s)	719
PsuI	RGATCY	1 cut(s)	555
RsaI	GTAC	1 cut(s)	621
RsaNI	GTAC	1 cut(s)	620
RseI	CAYNNNNRTG	1 cut(s)	112
SacI	GAGCTC	1 cut(s)	699
SalI	GTCGAC	1 cut(s)	676
SaqAI	TTAA	5 cut(s)	429, 569, 1020, 1100, 1173
SatI	GCNGC	4 cut(s)	520, 795, 826, 866
Sau3AI	GATC	3 cut(s)	372, 555, 1089
Sau96I	GGNCC	4 cut(s)	469, 512, 562, 716
SchI	GAGTC	3 cut(s)	673, 693, 1215
ScrFI	CCNGG	2 cut(s)	560, 799
SduI	GDGCHC	2 cut(s)	9, 699
SfaNI	GCATC	4 cut(s)	270, 642, 852, 1201
Sfr274I	CTCGAG	1 cut(s)	681
SinI	GGWCC	4 cut(s)	469, 512, 562, 716
SlaI	CTCGAG	1 cut(s)	681
SmiMI	CAYNNNNRTG	1 cut(s)	112
SmlI	CTYRAG	2 cut(s)	500, 681
SmoI	CTYRAG	2 cut(s)	500, 681
Sse9I	AATT	2 cut(s)	405, 892
SsiI	CCGC	4 cut(s)	219, 459, 826, 912
SspMI	CTAG	1 cut(s)	536
SstI	GAGCTC	1 cut(s)	699
StyD4I	CCNGG	2 cut(s)	558, 797
StyI	CCWWGG	3 cut(s)	472, 941, 993
TaaI	ACNGT	2 cut(s)	172, 268
TaqI	TCGA	5 cut(s)	630, 677, 682, 925, 1209
TasI	AATT	2 cut(s)	405, 892
TauI	GCSGC	1 cut(s)	828
TfiI	GAWTC	4 cut(s)	394, 972, 1050, 1104
Tru1I	TTAA	5 cut(s)	429, 569, 1020, 1100, 1173
Tru9I	TTAA	5 cut(s)	429, 569, 1020, 1100, 1173
TscAI	CASTG	3 cut(s)	127, 382, 756
TseI	GCWGC	3 cut(s)	519, 794, 865
TspDTI	ATGAA	2 cut(s)	96, 1131
TspRI	CASTG	3 cut(s)	127, 382, 756
VpaK11BI	GGWCC	4 cut(s)	469, 512, 562, 716
XapI	RAATTY	1 cut(s)	892
XceI	RCATGY	1 cut(s)	672
XhoI	CTCGAG	1 cut(s)	681
XmiI	GTMKAC	1 cut(s)	677
XspI	CTAG	1 cut(s)	536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.