AT4G23885

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
12419394 .. 12420467
1074 bp
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UTR
Exon/CDS
Intron
AT4G23885.1

Sequence Viewer

Length: 234 bp
ATGAACGTAGTTCACGGTTTGAAGAGGATTCCTCGCATCAAATTCCCTCAGAGACATATTAATCCTTCAGCTTCAGAGGGAAAGAGTCAGGTGGCAAATGAAGCTGATACATTGTTCTTCTCCAATTTGAACAACATCCAAAAGACTACTGGCGGGAAGGCATCATCGCAGCCAAAGCGCACGCCAGTTTCAAACGAAGAAATGGAAGCCATTTTGTTGGGAGGCTGCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.4

Weight (kDa)

9.74

Isoelectric Point (pI)

52.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 153
AcsI RAATTY 1 cut(s) 41
AcuI CTGAAG 2 cut(s) 51, 57
AgsI TTSAA 3 cut(s) 22, 130, 192
AluBI AGCT 2 cut(s) 71, 104
AluI AGCT 2 cut(s) 71, 104
Alw26I GTCTC 1 cut(s) 46
ApeKI GCWGC 2 cut(s) 169, 225
ApoI RAATTY 1 cut(s) 41
AseI ATTAAT 1 cut(s) 60
AspLEI GCGC 1 cut(s) 180
BbvI GCAGC 2 cut(s) 181, 212
BcoDI GTCTC 1 cut(s) 46
BisI GCNGC 2 cut(s) 170, 226
BlsI GCNGC 2 cut(s) 171, 227
BmsI GCATC 2 cut(s) 45, 170
BplI GAGNNNNNCTC 2 cut(s) 16, 48
Bse1I ACTGG 2 cut(s) 154, 185
BseGI GGATG 1 cut(s) 135
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 2 cut(s) 154, 185
BseXI GCAGC 2 cut(s) 181, 212
BsmAI GTCTC 1 cut(s) 46
BspACI CCGC 1 cut(s) 153
BspCNI CTCAG 1 cut(s) 61
BsrI ACTGG 2 cut(s) 154, 185
Bst4CI ACNGT 1 cut(s) 17
Bst6I CTCTTC 1 cut(s) 17
BstC8I GCNNGC 1 cut(s) 182
BstDEI CTNAG 1 cut(s) 48
BstF5I GGATG 1 cut(s) 135
BstHHI GCGC 1 cut(s) 180
BstMAI GTCTC 1 cut(s) 46
BstMWI GCNNNNNNNGC 2 cut(s) 101, 175
BstV1I GCAGC 2 cut(s) 181, 212
BstXI CCANNNNNNTGG 1 cut(s) 217
BtgZI GCGATG 1 cut(s) 150
BtsCI GGATG 1 cut(s) 135
Cac8I GCNNGC 1 cut(s) 182
CfoI GCGC 1 cut(s) 180
CviJI RGCY 5 cut(s) 71, 104, 172, 209, 225
CviKI_1 RGCY 5 cut(s) 71, 104, 172, 209, 225
DdeI CTNAG 1 cut(s) 48
Eam1104I CTCTTC 1 cut(s) 17
EarI CTCTTC 1 cut(s) 17
Eco57I CTGAAG 2 cut(s) 51, 57
FaiI YATR 1 cut(s) 57
FauI CCCGC 1 cut(s) 146
Fnu4HI GCNGC 2 cut(s) 170, 226
FokI GGATG 1 cut(s) 122
Fsp4HI GCNGC 2 cut(s) 170, 226
GlaI GCGC 1 cut(s) 179
GluI GCNGC 2 cut(s) 170, 226
HhaI GCGC 1 cut(s) 180
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HinfI GANTC 2 cut(s) 28, 85
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 3 cut(s) 51, 76, 233
Hpy8I GTNNAC 1 cut(s) 13
HpyAV CCTTC 2 cut(s) 75, 151
HpyCH4III ACNGT 1 cut(s) 17
HpyCH4IV ACGT 1 cut(s) 6
HpyCH4V TGCA 1 cut(s) 228
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 175
HpyF3I CTNAG 1 cut(s) 48
HpySE526I ACGT 1 cut(s) 6
HspAI GCGC 1 cut(s) 178
LpnPI CCDG 3 cut(s) 74, 135, 198
Lsp1109I GCAGC 2 cut(s) 181, 212
LweI GCATC 2 cut(s) 45, 170
MaeII ACGT 1 cut(s) 6
MboII GAAGA 3 cut(s) 34, 109, 209
MluCI AATT 2 cut(s) 41, 124
MlyI GAGTC 1 cut(s) 94
MnlI CCTC 5 cut(s) 18, 42, 57, 70, 215
MseI TTAA 1 cut(s) 60
MwoI GCNNNNNNNGC 2 cut(s) 101, 175
PfeI GAWTC 1 cut(s) 28
PkrI GCNGC 2 cut(s) 171, 227
PleI GAGTC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 93
PshBI ATTAAT 1 cut(s) 60
SaqAI TTAA 1 cut(s) 60
SatI GCNGC 2 cut(s) 170, 226
SchI GAGTC 1 cut(s) 94
SetI ASST 4 cut(s) 9, 73, 93, 106
SfaNI GCATC 2 cut(s) 45, 170
SgeI CNNG 7 cut(s) 26, 45, 101, 162, 166, 193, 197
Sse9I AATT 2 cut(s) 41, 124
SsiI CCGC 1 cut(s) 153
TaaI ACNGT 1 cut(s) 17
TaiI ACGT 1 cut(s) 9
TasI AATT 2 cut(s) 41, 124
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TseI GCWGC 2 cut(s) 169, 225
TspDTI ATGAA 2 cut(s) 17, 114
VspI ATTAAT 1 cut(s) 60
XapI RAATTY 1 cut(s) 41
XcmI CCANNNNNNNNNTGG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.