Rorug07G0017700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0010776
Physical Location & Seq
Reverse (-)
1386959 .. 1387981
1023 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0017700.1

Sequence Viewer

Length: 630 bp
ATGGCTGTATCTAAGAAAGAATCGATGCTGGTTAACGAGGAGGAACTGGAAGACGATAGTGATATGGGGGACGATGTGTCTGAGTCAGAATTGGAACAAGAATCAGAAGAGGAATCTGAAGAGGAAGGAGATGTGAGATTGGCTGAACCCTCCCAGAATGCTACATACAACAGAGATGGTCTATTAGAGAAGCTTGGAGATATGAGCTGGCCTGAGAATGCTAAATGGGTGGACAGGCTTACGTTGGATATTGAGCAAGAGCAACCAGTGGATGTGAATGATGACCTGACAAGGGAGCTTGCGTTTTATACACAGGCTCTAAATGGAACGAGGATGGCCTTTGAGAGGCTTCAGTCGATGGGGCTTCCATTTCTGAGACCTGAGGACTACTATGCAGAAATGGTGAAGTCCGATTCCCACATGGAGAAAGTGAAGAGCCGGCTTTTGGTGGAGAAGAAGAACATGGAGGAAGCTGATGAGAGAAGGAAGGCCAGAGAGGCCAAGAAATTGTCTAAAGAGATTCATAACCAGAAGTTGAAGGAGAGAGCTAAGCAGAAAAAGGAGTCTATTGAGTCTGTGCAGAAGTGGAGGAAGCAGAGGCAGCAAAGTGGGTTTGCTGGGGGCGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

24.25

Weight (kDa)

4.75

Isoelectric Point (pI)

69.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ebp2 PF05890 56 - 205 1.3e-51 Eukaryotic rRNA processing protein EBP2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 624
AcuI CTGAAG 2 cut(s) 138, 335
AfiI CCNNNNNNNGG 3 cut(s) 292, 345, 445
AgsI TTSAA 1 cut(s) 538
AhdI GACNNNNNGTC 1 cut(s) 76
AluBI AGCT 5 cut(s) 193, 207, 298, 473, 548
AluI AGCT 5 cut(s) 193, 207, 298, 473, 548
Alw26I GTCTC 1 cut(s) 370
AoxI GGCC 4 cut(s) 209, 336, 489, 498
ApeKI GCWGC 1 cut(s) 601
AsuHPI GGTGA 1 cut(s) 415
AxyI CCTNAGG 1 cut(s) 381
BbsI GAAGAC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 613
BccI CCATC 3 cut(s) 170, 328, 352
BcoDI GTCTC 1 cut(s) 370
BglI GCCNNNNNGGC 1 cut(s) 497
BisI GCNGC 1 cut(s) 602
BlpI GCTNAGC 1 cut(s) 549
BlsI GCNGC 1 cut(s) 603
BmeRI GACNNNNNGTC 1 cut(s) 76
BmsI GCATC 1 cut(s) 15
BpiI GAAGAC 1 cut(s) 57
Bpu1102I GCTNAGC 1 cut(s) 549
Bsa29I ATCGAT 1 cut(s) 23
BsaI GGTCTC 1 cut(s) 370
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bsc4I CCNNNNNNNGG 3 cut(s) 292, 345, 445
Bse118I RCCGGY 1 cut(s) 438
Bse1I ACTGG 2 cut(s) 51, 266
Bse21I CCTNAGG 1 cut(s) 381
BseCI ATCGAT 1 cut(s) 23
BseGI GGATG 2 cut(s) 277, 339
BseLI CCNNNNNNNGG 3 cut(s) 292, 345, 445
BseMII CTCAG 4 cut(s) 72, 204, 365, 372
BseNI ACTGG 2 cut(s) 51, 266
BseRI GAGGAG 1 cut(s) 53
BseXI GCAGC 1 cut(s) 613
BseYI CCCAGC 1 cut(s) 617
BsgI GTGCAG 1 cut(s) 599
BshFI GGCC 4 cut(s) 211, 338, 491, 500
BshVI ATCGAT 1 cut(s) 23
BsiSI CCGG 1 cut(s) 439
BslFI GGGAC 1 cut(s) 83
BslI CCNNNNNNNGG 3 cut(s) 292, 345, 445
BsmAI GTCTC 1 cut(s) 370
BsmFI GGGAC 1 cut(s) 83
BsmI GAATGC 2 cut(s) 163, 223
BsnI GGCC 4 cut(s) 211, 338, 491, 500
Bso31I GGTCTC 1 cut(s) 370
Bsp1720I GCTNAGC 1 cut(s) 549
BspACI CCGC 1 cut(s) 624
BspANI GGCC 4 cut(s) 211, 338, 491, 500
BspCNI CTCAG 4 cut(s) 73, 205, 366, 373
BspDI ATCGAT 1 cut(s) 23
BspQI GCTCTTC 1 cut(s) 428
BspTNI GGTCTC 1 cut(s) 370
BsrFI RCCGGY 1 cut(s) 438
BsrI ACTGG 2 cut(s) 51, 266
BssAI RCCGGY 1 cut(s) 438
Bst6I CTCTTC 3 cut(s) 102, 114, 428
BstC8I GCNNGC 3 cut(s) 209, 300, 440
BstDEI CTNAG 6 cut(s) 12, 81, 213, 374, 381, 549
BstENI CCTNNNNNAGG 1 cut(s) 343
BstF5I GGATG 2 cut(s) 277, 339
BstMAI GTCTC 1 cut(s) 370
BstMWI GCNNNNNNNGC 2 cut(s) 497, 601
BstV1I GCAGC 1 cut(s) 613
BstV2I GAAGAC 1 cut(s) 57
Bsu15I ATCGAT 1 cut(s) 23
Bsu36I CCTNAGG 1 cut(s) 381
BsuRI GGCC 4 cut(s) 211, 338, 491, 500
BsuTUI ATCGAT 1 cut(s) 23
BtsCI GGATG 2 cut(s) 277, 339
BtsIMutI CAGTG 1 cut(s) 273
Cac8I GCNNGC 3 cut(s) 209, 300, 440
Cfr10I RCCGGY 1 cut(s) 438
ClaI ATCGAT 1 cut(s) 23
CviAII CATG 2 cut(s) 421, 463
DdeI CTNAG 6 cut(s) 12, 81, 213, 374, 381, 549
DriI GACNNNNNGTC 1 cut(s) 76
Eam1104I CTCTTC 3 cut(s) 102, 114, 428
Eam1105I GACNNNNNGTC 1 cut(s) 76
EarI CTCTTC 3 cut(s) 102, 114, 428
Eco31I GGTCTC 1 cut(s) 370
Eco57I CTGAAG 2 cut(s) 138, 335
Eco81I CCTNAGG 1 cut(s) 381
EcoNI CCTNNNNNAGG 1 cut(s) 343
FaeI CATG 2 cut(s) 424, 466
FaiI YATR 8 cut(s) 65, 166, 203, 309, 393, 422, 464, 525
FaqI GGGAC 1 cut(s) 83
FatI CATG 2 cut(s) 420, 462
FauI CCCGC 1 cut(s) 617
Fnu4HI GCNGC 1 cut(s) 602
FokI GGATG 2 cut(s) 284, 346
Fsp4HI GCNGC 1 cut(s) 602
GluI GCNGC 1 cut(s) 602
GsaI CCCAGC 1 cut(s) 621
HaeIII GGCC 4 cut(s) 211, 338, 491, 500
HapII CCGG 1 cut(s) 439
Hin1II CATG 2 cut(s) 424, 466
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HindIII AAGCTT 1 cut(s) 191
HinfI GANTC 8 cut(s) 20, 83, 101, 113, 413, 520, 563, 572
HpaI GTTAAC 1 cut(s) 34
HpaII CCGG 1 cut(s) 439
HphI GGTGA 1 cut(s) 415
Hpy166II GTNNAC 2 cut(s) 34, 232
Hpy188I TCNGA 6 cut(s) 82, 88, 106, 118, 375, 412
Hpy8I GTNNAC 2 cut(s) 34, 232
HpyAV CCTTC 4 cut(s) 119, 477, 481, 532
HpyCH4IV ACGT 1 cut(s) 242
HpyCH4V TGCA 2 cut(s) 395, 580
HpyF10VI GCNNNNNNNGC 2 cut(s) 497, 601
HpyF3I CTNAG 6 cut(s) 12, 81, 213, 374, 381, 549
HpySE526I ACGT 1 cut(s) 242
Hsp92II CATG 2 cut(s) 424, 466
KroI GCCGGC 1 cut(s) 438
KroNI GCCGGC 1 cut(s) 440
KspAI GTTAAC 1 cut(s) 34
LguI GCTCTTC 1 cut(s) 428
LmnI GCTCC 1 cut(s) 295
Lsp1109I GCAGC 1 cut(s) 613
LweI GCATC 1 cut(s) 15
MaeII ACGT 1 cut(s) 242
MboII GAAGA 6 cut(s) 62, 119, 131, 445, 466, 469
MluCI AATT 2 cut(s) 89, 506
MlyI GAGTC 3 cut(s) 92, 572, 581
MmeI TCCRAC 1 cut(s) 225
MroNI GCCGGC 1 cut(s) 438
MseI TTAA 1 cut(s) 33
MspI CCGG 1 cut(s) 439
Mva1269I GAATGC 2 cut(s) 163, 223
MwoI GCNNNNNNNGC 2 cut(s) 497, 601
NaeI GCCGGC 1 cut(s) 440
NgoMIV GCCGGC 1 cut(s) 438
NlaIII CATG 2 cut(s) 424, 466
PciSI GCTCTTC 1 cut(s) 428
PctI GAATGC 2 cut(s) 163, 223
PdiI GCCGGC 1 cut(s) 440
PfeI GAWTC 5 cut(s) 20, 101, 113, 413, 520
PkrI GCNGC 1 cut(s) 603
PleI GAGTC 3 cut(s) 91, 571, 580
PpsI GAGTC 3 cut(s) 91, 571, 580
PspFI CCCAGC 1 cut(s) 617
SapI GCTCTTC 1 cut(s) 428
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 1 cut(s) 602
SchI GAGTC 3 cut(s) 92, 572, 581
SetI ASST 8 cut(s) 195, 209, 245, 288, 300, 382, 475, 550
SfaNI GCATC 1 cut(s) 15
SfiI GGCCNNNNNGGCC 1 cut(s) 497
Sse9I AATT 2 cut(s) 89, 506
SsiI CCGC 1 cut(s) 624
TaiI ACGT 1 cut(s) 245
TaqI TCGA 2 cut(s) 23, 356
TasI AATT 2 cut(s) 89, 506
TfiI GAWTC 5 cut(s) 20, 101, 113, 413, 520
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TscAI CASTG 1 cut(s) 273
TseI GCWGC 1 cut(s) 601
TspDTI ATGAA 1 cut(s) 512
TspRI CASTG 1 cut(s) 273
XagI CCTNNNNNAGG 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.