Rw7G012410

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
11710124 .. 11713470
3347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G012410.1

Sequence Viewer

Length: 237 bp
ATGGGTGGAGCCCAGTTGATGAAGCGAATCCCTCGCATCAAATTTCCTCAGAGACATCCAAAGCCCGCTGGTTCTGAATCCCAGACAGCAGCACCTTTGGCTGGAGATTCTGTTCAAGCTTTCTTCTCAAGTTCAAAGGCTTCAACAACTTTGGGAGGAAAAGCTTCTGAACAACCCCCACGAACACCAGTATCCAAAGAAGAGATTGAGGCTATTTTGTTGGGTGGCTGCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.15

Weight (kDa)

9.74

Isoelectric Point (pI)

66.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 66
AcsI RAATTY 1 cut(s) 41
AfiI CCNNNNNNNGG 1 cut(s) 101
AgsI TTSAA 3 cut(s) 116, 135, 144
AloI GAACNNNNNNTCC 2 cut(s) 96, 128
AluBI AGCT 2 cut(s) 119, 164
AluI AGCT 2 cut(s) 119, 164
Alw26I GTCTC 1 cut(s) 46
ApeKI GCWGC 2 cut(s) 89, 228
ApoI RAATTY 1 cut(s) 41
Asp700I GAANNNNTTC 1 cut(s) 163
BaeI ACNNNNGTAYC 2 cut(s) 174, 207
BanII GRGCYC 1 cut(s) 13
BbvI GCAGC 2 cut(s) 101, 215
BciVI GTATCC 1 cut(s) 202
BcoDI GTCTC 1 cut(s) 46
BfuI GTATCC 1 cut(s) 202
BisI GCNGC 2 cut(s) 90, 229
BlsI GCNGC 2 cut(s) 91, 230
BmiI GGNNCC 1 cut(s) 10
BmrI ACTGGG 1 cut(s) 7
BmsI GCATC 1 cut(s) 45
BmuI ACTGGG 1 cut(s) 7
BpmI CTGGAG 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 112
BsaXI ACNNNNNCTCC 2 cut(s) 96, 126
Bsc4I CCNNNNNNNGG 1 cut(s) 101
Bse1I ACTGG 2 cut(s) 13, 188
BseGI GGATG 1 cut(s) 55
BseLI CCNNNNNNNGG 1 cut(s) 101
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 2 cut(s) 13, 188
BseXI GCAGC 2 cut(s) 101, 215
BslI CCNNNNNNNGG 1 cut(s) 101
BsmAI GTCTC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 13
BspACI CCGC 1 cut(s) 66
BspCNI CTCAG 1 cut(s) 61
BspLI GGNNCC 1 cut(s) 10
BsrI ACTGG 2 cut(s) 13, 188
Bst6I CTCTTC 1 cut(s) 195
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 1 cut(s) 48
BstF5I GGATG 1 cut(s) 55
BstMAI GTCTC 1 cut(s) 46
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstV1I GCAGC 2 cut(s) 101, 215
BsuI GTATCC 1 cut(s) 202
BtsCI GGATG 1 cut(s) 55
Cac8I GCNNGC 1 cut(s) 66
CviJI RGCY 8 cut(s) 11, 64, 101, 119, 140, 164, 212, 228
CviKI_1 RGCY 8 cut(s) 11, 64, 101, 119, 140, 164, 212, 228
DdeI CTNAG 1 cut(s) 48
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Eco24I GRGCYC 1 cut(s) 13
EcoT38I GRGCYC 1 cut(s) 13
FauI CCCGC 1 cut(s) 73
Fnu4HI GCNGC 2 cut(s) 90, 229
FokI GGATG 1 cut(s) 42
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 2 cut(s) 90, 229
GluI GCNGC 2 cut(s) 90, 229
GsuI CTGGAG 1 cut(s) 123
HindIII AAGCTT 2 cut(s) 117, 162
HinfI GANTC 3 cut(s) 27, 77, 107
Hpy188I TCNGA 4 cut(s) 51, 76, 169, 236
HpyCH4V TGCA 1 cut(s) 231
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpyF3I CTNAG 1 cut(s) 48
LmnI GCTCC 1 cut(s) 8
LpnPI CCDG 5 cut(s) 26, 54, 87, 95, 201
Lsp1109I GCAGC 2 cut(s) 101, 215
LweI GCATC 1 cut(s) 45
MboII GAAGA 2 cut(s) 115, 212
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 1 cut(s) 41
MnlI CCTC 4 cut(s) 42, 57, 149, 202
MroXI GAANNNNTTC 1 cut(s) 163
MspA1I CMGCKG 1 cut(s) 68
MwoI GCNNNNNNNGC 1 cut(s) 98
NlaIV GGNNCC 1 cut(s) 10
PdmI GAANNNNTTC 1 cut(s) 163
PfeI GAWTC 3 cut(s) 27, 77, 107
PkrI GCNGC 2 cut(s) 91, 230
PspN4I GGNNCC 1 cut(s) 10
SatI GCNGC 2 cut(s) 90, 229
SduI GDGCHC 1 cut(s) 13
SetI ASST 3 cut(s) 97, 121, 166
SfaNI GCATC 1 cut(s) 45
SmlI CTYRAG 1 cut(s) 127
SmoI CTYRAG 1 cut(s) 127
Sse9I AATT 1 cut(s) 41
SsiI CCGC 1 cut(s) 66
TasI AATT 1 cut(s) 41
TfiI GAWTC 3 cut(s) 27, 77, 107
TseI GCWGC 2 cut(s) 89, 228
TspDTI ATGAA 1 cut(s) 35
XapI RAATTY 1 cut(s) 41
XmnI GAANNNNTTC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.