Rh7DG146700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Reverse (-)
12557144 .. 12560908
3765 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG146700.1

Sequence Viewer

Length: 366 bp
ATGATATTTGTTCTGCATTGTCAAATTGCTCAGGACAGACAGACATCGGAAGCTTTCTTTCTTTGTTGTATTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCTCCGGCAGAAGAGAAGAGAGAGAGAGATGGGTGGAGCCCAGTTGATGAAGCGAATCCCTCGCATCAAATTTCCTCAGAGACATCCAAAGCCCGCTGGTTCTGAATCCCAGACAGCAGCACCTTTGGCTGGAGATTCTGTTCAAGCTTTCTTCTCAAGTTCAAAGGCTTCAACAACTTTGGGAGGAAAAGCTTCTGAACAACCCCCACGAACACCAGTATCCAAAGAAGAGATTGAGGCTATTTTGTTGGGTGGCTGCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.76

Weight (kDa)

11.46

Isoelectric Point (pI)

102.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 195
AcsI RAATTY 1 cut(s) 170
AfiI CCNNNNNNNGG 1 cut(s) 230
AgsI TTSAA 3 cut(s) 245, 264, 273
AloI GAACNNNNNNTCC 2 cut(s) 225, 257
AluBI AGCT 3 cut(s) 53, 248, 293
AluI AGCT 3 cut(s) 53, 248, 293
Alw26I GTCTC 2 cut(s) 107, 175
ApeKI GCWGC 2 cut(s) 218, 357
ApoI RAATTY 1 cut(s) 170
Asp700I GAANNNNTTC 1 cut(s) 292
BaeI ACNNNNGTAYC 2 cut(s) 303, 336
BanII GRGCYC 1 cut(s) 142
BbvI GCAGC 2 cut(s) 230, 344
BccI CCATC 1 cut(s) 124
BciVI GTATCC 1 cut(s) 331
BcoDI GTCTC 2 cut(s) 107, 175
BfuI GTATCC 1 cut(s) 331
BisI GCNGC 2 cut(s) 219, 358
BlsI GCNGC 2 cut(s) 220, 359
BmiI GGNNCC 1 cut(s) 139
BmrI ACTGGG 1 cut(s) 136
BmsI GCATC 1 cut(s) 174
BmuI ACTGGG 1 cut(s) 136
BpmI CTGGAG 1 cut(s) 252
Bpu10I CCTNAGC 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 241
BsaXI ACNNNNNCTCC 2 cut(s) 225, 255
Bsc4I CCNNNNNNNGG 1 cut(s) 230
Bse1I ACTGG 2 cut(s) 142, 317
BseGI GGATG 1 cut(s) 184
BseLI CCNNNNNNNGG 1 cut(s) 230
BseMII CTCAG 2 cut(s) 44, 191
BseNI ACTGG 2 cut(s) 142, 317
BseXI GCAGC 2 cut(s) 230, 344
BsiSI CCGG 1 cut(s) 106
BslI CCNNNNNNNGG 1 cut(s) 230
BsmAI GTCTC 2 cut(s) 107, 175
BsmBI CGTCTC 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 142
BspACI CCGC 1 cut(s) 195
BspCNI CTCAG 2 cut(s) 43, 190
BspLI GGNNCC 1 cut(s) 139
BsrI ACTGG 2 cut(s) 142, 317
Bst6I CTCTTC 3 cut(s) 107, 112, 324
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 2 cut(s) 30, 177
BstF5I GGATG 1 cut(s) 184
BstMAI GTCTC 2 cut(s) 107, 175
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstV1I GCAGC 2 cut(s) 230, 344
BsuI GTATCC 1 cut(s) 331
BtsCI GGATG 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 195
CviJI RGCY 9 cut(s) 53, 140, 193, 230, 248, 269, 293, 341, 357
CviKI_1 RGCY 9 cut(s) 53, 140, 193, 230, 248, 269, 293, 341, 357
DdeI CTNAG 2 cut(s) 30, 177
Eam1104I CTCTTC 3 cut(s) 107, 112, 324
EarI CTCTTC 3 cut(s) 107, 112, 324
Eco24I GRGCYC 1 cut(s) 142
EcoT38I GRGCYC 1 cut(s) 142
Esp3I CGTCTC 1 cut(s) 107
FauI CCCGC 1 cut(s) 202
Fnu4HI GCNGC 2 cut(s) 219, 358
FokI GGATG 1 cut(s) 171
FriOI GRGCYC 1 cut(s) 142
Fsp4HI GCNGC 2 cut(s) 219, 358
GluI GCNGC 2 cut(s) 219, 358
GsuI CTGGAG 1 cut(s) 252
HapII CCGG 1 cut(s) 106
HindIII AAGCTT 3 cut(s) 51, 246, 291
HinfI GANTC 3 cut(s) 156, 206, 236
HpaII CCGG 1 cut(s) 106
Hpy188I TCNGA 5 cut(s) 49, 180, 205, 298, 365
Hpy188III TCNNGA 1 cut(s) 32
Hpy99I CGWCG 9 cut(s) 78, 81, 84, 87, 90, 93, 96, 99, 102
HpyCH4V TGCA 2 cut(s) 16, 360
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
HpyF3I CTNAG 2 cut(s) 30, 177
LmnI GCTCC 1 cut(s) 137
LpnPI CCDG 7 cut(s) 17, 119, 155, 183, 216, 224, 330
Lsp1109I GCAGC 2 cut(s) 230, 344
LweI GCATC 1 cut(s) 174
MboII GAAGA 4 cut(s) 124, 129, 244, 341
MhlI GDGCHC 1 cut(s) 142
MluCI AATT 2 cut(s) 24, 170
MnlI CCTC 4 cut(s) 171, 186, 278, 331
MroXI GAANNNNTTC 1 cut(s) 292
MspA1I CMGCKG 1 cut(s) 197
MspI CCGG 1 cut(s) 106
MwoI GCNNNNNNNGC 1 cut(s) 227
NlaIV GGNNCC 1 cut(s) 139
PcsI WCGNNNNNNNCGW 7 cut(s) 79, 82, 85, 88, 91, 94, 97
PdmI GAANNNNTTC 1 cut(s) 292
PfeI GAWTC 3 cut(s) 156, 206, 236
PkrI GCNGC 2 cut(s) 220, 359
PspN4I GGNNCC 1 cut(s) 139
SatI GCNGC 2 cut(s) 219, 358
SduI GDGCHC 1 cut(s) 142
SetI ASST 4 cut(s) 55, 226, 250, 295
SfaNI GCATC 1 cut(s) 174
SmlI CTYRAG 1 cut(s) 256
SmoI CTYRAG 1 cut(s) 256
Sse9I AATT 2 cut(s) 24, 170
SsiI CCGC 1 cut(s) 195
TasI AATT 2 cut(s) 24, 170
TfiI GAWTC 3 cut(s) 156, 206, 236
TseI GCWGC 2 cut(s) 218, 357
TspDTI ATGAA 1 cut(s) 164
XapI RAATTY 1 cut(s) 170
XmnI GAANNNNTTC 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.