RchiOBHm_Chr7g0194731

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
12746661 .. 12750079
3419 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17414

Sequence Viewer

Length: 354 bp
ATGATATTTGTTCTGCATTGTCAAATTGCTCAGGACAGACGGACATCGGAAGCTTTCTTTCTTTGTTGTATTCGTCGTCGTCGTCGTCGTCTCCGGCAGAAGAGAAGAGAGAGAGAGATGGGTGGAGCCCAGTTGATGAAGCGAATCCCTCGCATCAAATTTCCTCAGAGACATCCAAAGCCCGCTGGTTCTGAATCCCAGACAGCAGCACCTTTGGCTGGAGATTCTGTTCAAGCTTTCTTCTCAAGTTCAAAGGCTTCAACAACTTTGGGAGGAAAAGCTTCTGAACAACCCCCACGAACACCAGTATCCAAAGAAGAGATTGAGGCTATTTTGTTGGGTGGCTGCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.17

Weight (kDa)

11.05

Isoelectric Point (pI)

89.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 183
AcsI RAATTY 1 cut(s) 158
AfiI CCNNNNNNNGG 1 cut(s) 218
AgsI TTSAA 3 cut(s) 233, 252, 261
AloI GAACNNNNNNTCC 2 cut(s) 213, 245
AluBI AGCT 3 cut(s) 53, 236, 281
AluI AGCT 3 cut(s) 53, 236, 281
Alw26I GTCTC 2 cut(s) 95, 163
ApeKI GCWGC 2 cut(s) 206, 345
ApoI RAATTY 1 cut(s) 158
Asp700I GAANNNNTTC 1 cut(s) 280
BaeI ACNNNNGTAYC 2 cut(s) 291, 324
BanII GRGCYC 1 cut(s) 130
BbvI GCAGC 2 cut(s) 218, 332
BccI CCATC 1 cut(s) 112
BciVI GTATCC 1 cut(s) 319
BcoDI GTCTC 2 cut(s) 95, 163
BfuI GTATCC 1 cut(s) 319
BisI GCNGC 2 cut(s) 207, 346
BlsI GCNGC 2 cut(s) 208, 347
BmiI GGNNCC 1 cut(s) 127
BmrI ACTGGG 1 cut(s) 124
BmsI GCATC 1 cut(s) 162
BmuI ACTGGG 1 cut(s) 124
BpmI CTGGAG 1 cut(s) 240
Bpu10I CCTNAGC 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 229
BsaXI ACNNNNNCTCC 2 cut(s) 213, 243
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse1I ACTGG 2 cut(s) 130, 305
BseGI GGATG 1 cut(s) 172
BseLI CCNNNNNNNGG 1 cut(s) 218
BseMII CTCAG 2 cut(s) 44, 179
BseNI ACTGG 2 cut(s) 130, 305
BseXI GCAGC 2 cut(s) 218, 332
BsiSI CCGG 1 cut(s) 94
BslI CCNNNNNNNGG 1 cut(s) 218
BsmAI GTCTC 2 cut(s) 95, 163
BsmBI CGTCTC 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 130
BspACI CCGC 1 cut(s) 183
BspCNI CTCAG 2 cut(s) 43, 178
BspLI GGNNCC 1 cut(s) 127
BsrI ACTGG 2 cut(s) 130, 305
Bst6I CTCTTC 3 cut(s) 95, 100, 312
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 2 cut(s) 30, 165
BstF5I GGATG 1 cut(s) 172
BstMAI GTCTC 2 cut(s) 95, 163
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstV1I GCAGC 2 cut(s) 218, 332
BsuI GTATCC 1 cut(s) 319
BtsCI GGATG 1 cut(s) 172
Cac8I GCNNGC 1 cut(s) 183
CviJI RGCY 9 cut(s) 53, 128, 181, 218, 236, 257, 281, 329, 345
CviKI_1 RGCY 9 cut(s) 53, 128, 181, 218, 236, 257, 281, 329, 345
DdeI CTNAG 2 cut(s) 30, 165
Eam1104I CTCTTC 3 cut(s) 95, 100, 312
EarI CTCTTC 3 cut(s) 95, 100, 312
Eco24I GRGCYC 1 cut(s) 130
EcoT38I GRGCYC 1 cut(s) 130
Esp3I CGTCTC 1 cut(s) 95
FauI CCCGC 1 cut(s) 190
Fnu4HI GCNGC 2 cut(s) 207, 346
FokI GGATG 1 cut(s) 159
FriOI GRGCYC 1 cut(s) 130
Fsp4HI GCNGC 2 cut(s) 207, 346
GluI GCNGC 2 cut(s) 207, 346
GsuI CTGGAG 1 cut(s) 240
HapII CCGG 1 cut(s) 94
HindIII AAGCTT 3 cut(s) 51, 234, 279
HinfI GANTC 3 cut(s) 144, 194, 224
HpaII CCGG 1 cut(s) 94
Hpy188I TCNGA 5 cut(s) 49, 168, 193, 286, 353
Hpy188III TCNNGA 1 cut(s) 32
Hpy99I CGWCG 5 cut(s) 78, 81, 84, 87, 90
HpyCH4V TGCA 2 cut(s) 16, 348
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpyF3I CTNAG 2 cut(s) 30, 165
LmnI GCTCC 1 cut(s) 125
LpnPI CCDG 7 cut(s) 17, 107, 143, 171, 204, 212, 318
Lsp1109I GCAGC 2 cut(s) 218, 332
LweI GCATC 1 cut(s) 162
MboII GAAGA 4 cut(s) 112, 117, 232, 329
MhlI GDGCHC 1 cut(s) 130
MluCI AATT 2 cut(s) 24, 158
MnlI CCTC 4 cut(s) 159, 174, 266, 319
MroXI GAANNNNTTC 1 cut(s) 280
MspA1I CMGCKG 1 cut(s) 185
MspI CCGG 1 cut(s) 94
MwoI GCNNNNNNNGC 1 cut(s) 215
NlaIV GGNNCC 1 cut(s) 127
PcsI WCGNNNNNNNCGW 3 cut(s) 79, 82, 85
PdmI GAANNNNTTC 1 cut(s) 280
PfeI GAWTC 3 cut(s) 144, 194, 224
PkrI GCNGC 2 cut(s) 208, 347
PspN4I GGNNCC 1 cut(s) 127
SatI GCNGC 2 cut(s) 207, 346
SduI GDGCHC 1 cut(s) 130
SetI ASST 4 cut(s) 55, 214, 238, 283
SfaNI GCATC 1 cut(s) 162
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
Sse9I AATT 2 cut(s) 24, 158
SsiI CCGC 1 cut(s) 183
TasI AATT 2 cut(s) 24, 158
TfiI GAWTC 3 cut(s) 144, 194, 224
TseI GCWGC 2 cut(s) 206, 345
TspDTI ATGAA 1 cut(s) 152
TspGWI ACGGA 1 cut(s) 55
XapI RAATTY 1 cut(s) 158
XmnI GAANNNNTTC 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.