Rmu_sc0008861.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008861.1
OG0010776
Physical Location & Seq
Reverse (-)
13363 .. 18392
5030 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008861.1_g000006.1.cds

Sequence Viewer

Length: 729 bp
atgtacaagaatttgccggcggaccgctacggatgctctgtgatttcaacagctctcgctccgaagcatcttgatttgggtgtcgagttgacatgggacaaacctgactgtagtttatgtgaaaacaaagctcttctttgtggactggagcatggtaaaaagttccagtatacggtgctcctctctttctacggaaaccgcactgcaatttctatagtttcaggtgatctctcatcaagagctataaagtttggcctagtgctaagcgcgggaattcttgtagtattgttcatatatactttgtttgtgtctggtctcgtggccagccgccagcccacaatcactgaactatccaccatagccaccggacaactgcagcttccggaagctgaaaggggcctccatcgttactcgacggacaggcatcggaagctttctttctttgttgtattcgtcgtcgtcgtcgtctccggcagaagagaagagagagagatgggtggagcccagttgatgaagcgaatccctcgcatcaaatttcctcagagacatccaaagcccgctggttctgaatcccagacagcagcacctttggctggagattctgttcaagctttcttctcaagttcaaaggcttcaacaactttgggaggaaaagcttctgaacaacccccacgaacaccagtatccaaagaagagattgaggctattttgttgggtggctgcatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

26.33

Weight (kDa)

9.33

Isoelectric Point (pI)

38.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 170
AccII CGCG 1 cut(s) 269
AccIII TCCGGA 1 cut(s) 382
AciI CCGC 6 cut(s) 20, 25, 199, 269, 328, 558
AcoI YGGCCR 1 cut(s) 321
AcsI RAATTY 3 cut(s) 10, 273, 533
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 172, 593
AgsI TTSAA 4 cut(s) 48, 608, 627, 636
AloI GAACNNNNNNTCC 2 cut(s) 588, 620
AluBI AGCT 8 cut(s) 53, 131, 242, 379, 389, 433, 611, 656
AluI AGCT 8 cut(s) 53, 131, 242, 379, 389, 433, 611, 656
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 3 cut(s) 320, 472, 538
Aor13HI TCCGGA 1 cut(s) 382
AoxI GGCC 3 cut(s) 253, 321, 397
ApeKI GCWGC 3 cut(s) 376, 581, 720
ApoI RAATTY 3 cut(s) 10, 273, 533
Asp700I GAANNNNTTC 1 cut(s) 655
AspLEI GCGC 1 cut(s) 269
AspS9I GGNCC 2 cut(s) 22, 397
AsuHPI GGTGA 1 cut(s) 236
AvaII GGWCC 1 cut(s) 22
BaeI ACNNNNGTAYC 2 cut(s) 666, 699
BalI TGGCCA 1 cut(s) 323
BanII GRGCYC 1 cut(s) 505
BauI CACGAG 1 cut(s) 317
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 3 cut(s) 388, 593, 707
BccI CCATC 2 cut(s) 411, 487
BciVI GTATCC 1 cut(s) 694
BcoDI GTCTC 3 cut(s) 320, 472, 538
BfaI CTAG 1 cut(s) 257
BfmI CTRYAG 3 cut(s) 109, 213, 374
BfuI GTATCC 1 cut(s) 694
BisI GCNGC 4 cut(s) 328, 377, 582, 721
BlpI GCTNAGC 1 cut(s) 263
BlsI GCNGC 4 cut(s) 329, 378, 583, 722
Bme18I GGWCC 1 cut(s) 22
BmgT120I GGNCC 2 cut(s) 22, 397
BmiI GGNNCC 2 cut(s) 398, 502
BmrI ACTGGG 1 cut(s) 499
BmsI GCATC 4 cut(s) 23, 76, 433, 537
BmuI ACTGGG 1 cut(s) 499
BpmI CTGGAG 2 cut(s) 167, 615
Bpu1102I GCTNAGC 1 cut(s) 263
BpuEI CTTGAG 1 cut(s) 604
BsaI GGTCTC 1 cut(s) 320
BsaWI WCCGGW 2 cut(s) 365, 382
BsaXI ACNNNNNCTCC 2 cut(s) 588, 618
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 593
Bse118I RCCGGY 1 cut(s) 16
Bse1I ACTGG 4 cut(s) 150, 166, 505, 680
BseAI TCCGGA 1 cut(s) 382
BseGI GGATG 2 cut(s) 38, 547
BseLI CCNNNNNNNGG 2 cut(s) 172, 593
BseMII CTCAG 1 cut(s) 554
BseNI ACTGG 4 cut(s) 150, 166, 505, 680
BseRI GAGGAG 1 cut(s) 170
BseXI GCAGC 3 cut(s) 388, 593, 707
Bsh1236I CGCG 1 cut(s) 269
BshFI GGCC 3 cut(s) 255, 323, 399
BsiHKAI GWGCWC 1 cut(s) 180
BsiSI CCGG 4 cut(s) 17, 366, 383, 471
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 2 cut(s) 172, 593
BsmAI GTCTC 3 cut(s) 320, 472, 538
BsmBI CGTCTC 1 cut(s) 472
BsmFI GGGAC 1 cut(s) 110
BsnI GGCC 3 cut(s) 255, 323, 399
Bso31I GGTCTC 1 cut(s) 320
Bsp1286I GDGCHC 2 cut(s) 180, 505
Bsp13I TCCGGA 1 cut(s) 382
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 1 cut(s) 226
Bsp1720I GCTNAGC 1 cut(s) 263
BspACI CCGC 6 cut(s) 20, 25, 199, 269, 328, 558
BspANI GGCC 3 cut(s) 255, 323, 399
BspCNI CTCAG 1 cut(s) 553
BspEI TCCGGA 1 cut(s) 382
BspFNI CGCG 1 cut(s) 269
BspLI GGNNCC 2 cut(s) 398, 502
BspMAI CTGCAG 1 cut(s) 378
BspQI GCTCTTC 1 cut(s) 138
BspTNI GGTCTC 1 cut(s) 320
BsrFI RCCGGY 1 cut(s) 16
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 4 cut(s) 150, 166, 505, 680
BssAI RCCGGY 1 cut(s) 16
BssMI GATC 1 cut(s) 226
BssNAI GTATAC 1 cut(s) 171
BssSI CACGAG 1 cut(s) 317
Bst1107I GTATAC 1 cut(s) 171
Bst2BI CACGAG 1 cut(s) 317
Bst4CI ACNGT 2 cut(s) 110, 175
Bst6I CTCTTC 4 cut(s) 138, 472, 477, 687
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 4 cut(s) 18, 325, 332, 558
BstDEI CTNAG 2 cut(s) 263, 540
BstF5I GGATG 2 cut(s) 38, 547
BstFNI CGCG 1 cut(s) 269
BstHHI GCGC 1 cut(s) 269
BstKTI GATC 1 cut(s) 229
BstMAI GTCTC 3 cut(s) 320, 472, 538
BstMBI GATC 1 cut(s) 226
BstMWI GCNNNNNNNGC 3 cut(s) 33, 430, 590
BstSFI CTRYAG 3 cut(s) 109, 213, 374
BstUI CGCG 1 cut(s) 269
BstV1I GCAGC 3 cut(s) 388, 593, 707
BstZ17I GTATAC 1 cut(s) 171
BsuI GTATCC 1 cut(s) 694
BsuRI GGCC 3 cut(s) 255, 323, 399
BtsCI GGATG 2 cut(s) 38, 547
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 2 cut(s) 201, 342
Cac8I GCNNGC 4 cut(s) 18, 325, 332, 558
CfoI GCGC 1 cut(s) 269
Cfr10I RCCGGY 1 cut(s) 16
Cfr13I GGNCC 2 cut(s) 22, 397
CpoI CGGWCCG 1 cut(s) 22
Csp6I GTAC 1 cut(s) 4
CspI CGGWCCG 1 cut(s) 22
CviAII CATG 2 cut(s) 93, 152
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 2 cut(s) 263, 540
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
EaeI YGGCCR 1 cut(s) 321
Eam1104I CTCTTC 4 cut(s) 138, 472, 477, 687
EarI CTCTTC 4 cut(s) 138, 472, 477, 687
EciI GGCGGA 1 cut(s) 35
Eco24I GRGCYC 1 cut(s) 505
Eco31I GGTCTC 1 cut(s) 320
Eco47I GGWCC 1 cut(s) 22
EcoO109I RGGNCCY 1 cut(s) 397
EcoRI GAATTC 1 cut(s) 273
EcoT38I GRGCYC 1 cut(s) 505
Esp3I CGTCTC 1 cut(s) 472
FaeI CATG 2 cut(s) 96, 155
FalI AAGNNNNNCTT 2 cut(s) 120, 152
FaqI GGGAC 1 cut(s) 110
FatI CATG 2 cut(s) 92, 151
FauI CCCGC 2 cut(s) 262, 565
FblI GTMKAC 1 cut(s) 170
Fnu4HI GCNGC 4 cut(s) 328, 377, 582, 721
FokI GGATG 2 cut(s) 45, 534
FriOI GRGCYC 1 cut(s) 505
Fsp4HI GCNGC 4 cut(s) 328, 377, 582, 721
FspBI CTAG 1 cut(s) 257
GlaI GCGC 1 cut(s) 268
GluI GCNGC 4 cut(s) 328, 377, 582, 721
GsuI CTGGAG 2 cut(s) 167, 615
HaeIII GGCC 3 cut(s) 255, 323, 399
HapII CCGG 4 cut(s) 17, 366, 383, 471
HhaI GCGC 1 cut(s) 269
Hin1II CATG 2 cut(s) 96, 155
Hin6I GCGC 1 cut(s) 267
HinP1I GCGC 1 cut(s) 267
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HindIII AAGCTT 3 cut(s) 431, 609, 654
HinfI GANTC 3 cut(s) 519, 569, 599
HpaII CCGG 4 cut(s) 17, 366, 383, 471
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 3 cut(s) 90, 143, 171
Hpy188I TCNGA 6 cut(s) 63, 429, 543, 568, 661, 728
Hpy188III TCNNGA 3 cut(s) 71, 237, 383
Hpy8I GTNNAC 3 cut(s) 90, 143, 171
Hpy99I CGWCG 5 cut(s) 418, 458, 461, 464, 467
HpyCH4III ACNGT 2 cut(s) 110, 175
HpyCH4V TGCA 3 cut(s) 206, 376, 723
HpyF10VI GCNNNNNNNGC 3 cut(s) 33, 430, 590
HpyF3I CTNAG 2 cut(s) 263, 540
Hsp92II CATG 2 cut(s) 96, 155
HspAI GCGC 1 cut(s) 267
Kpn2I TCCGGA 1 cut(s) 382
KroI GCCGGC 1 cut(s) 16
KroNI GCCGGC 1 cut(s) 18
Kzo9I GATC 1 cut(s) 226
LguI GCTCTTC 1 cut(s) 138
LmnI GCTCC 4 cut(s) 64, 148, 183, 500
Lsp1109I GCAGC 3 cut(s) 388, 593, 707
LweI GCATC 4 cut(s) 23, 76, 433, 537
MaeI CTAG 1 cut(s) 257
MaeIII GTNAC 1 cut(s) 407
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MboII GAAGA 5 cut(s) 125, 489, 494, 607, 704
MhlI GDGCHC 2 cut(s) 180, 505
MlsI TGGCCA 1 cut(s) 323
MluCI AATT 4 cut(s) 10, 207, 273, 533
MluNI TGGCCA 1 cut(s) 323
MnlI CCTC 6 cut(s) 191, 410, 534, 549, 641, 694
Mox20I TGGCCA 1 cut(s) 323
MroI TCCGGA 1 cut(s) 382
MroNI GCCGGC 1 cut(s) 16
MroXI GAANNNNTTC 1 cut(s) 655
MscI TGGCCA 1 cut(s) 323
Msp20I TGGCCA 1 cut(s) 323
MspA1I CMGCKG 1 cut(s) 560
MspI CCGG 4 cut(s) 17, 366, 383, 471
MvnI CGCG 1 cut(s) 269
MwoI GCNNNNNNNGC 3 cut(s) 33, 430, 590
NaeI GCCGGC 1 cut(s) 18
NdeII GATC 1 cut(s) 226
NgoMIV GCCGGC 1 cut(s) 16
NlaIII CATG 2 cut(s) 96, 155
NlaIV GGNNCC 2 cut(s) 398, 502
PciSI GCTCTTC 1 cut(s) 138
PcsI WCGNNNNNNNCGW 2 cut(s) 459, 462
PdiI GCCGGC 1 cut(s) 18
PdmI GAANNNNTTC 1 cut(s) 655
PfeI GAWTC 3 cut(s) 519, 569, 599
PkrI GCNGC 4 cut(s) 329, 378, 583, 722
PspN4I GGNNCC 2 cut(s) 398, 502
PspPI GGNCC 2 cut(s) 22, 397
PstI CTGCAG 1 cut(s) 378
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
Rsr2I CGGWCCG 1 cut(s) 22
RsrII CGGWCCG 1 cut(s) 22
SapI GCTCTTC 1 cut(s) 138
SatI GCNGC 4 cut(s) 328, 377, 582, 721
Sau3AI GATC 1 cut(s) 226
Sau96I GGNCC 2 cut(s) 22, 397
SduI GDGCHC 2 cut(s) 180, 505
SfaNI GCATC 4 cut(s) 23, 76, 433, 537
SfcI CTRYAG 3 cut(s) 109, 213, 374
SinI GGWCC 1 cut(s) 22
SmlI CTYRAG 1 cut(s) 619
SmoI CTYRAG 1 cut(s) 619
Sse9I AATT 4 cut(s) 10, 207, 273, 533
SsiI CCGC 6 cut(s) 20, 25, 199, 269, 328, 558
SspMI CTAG 1 cut(s) 257
TaaI ACNGT 2 cut(s) 110, 175
TaqI TCGA 2 cut(s) 84, 413
TasI AATT 4 cut(s) 10, 207, 273, 533
TatI WGTACW 1 cut(s) 3
TauI GCSGC 1 cut(s) 330
TfiI GAWTC 3 cut(s) 519, 569, 599
TscAI CASTG 2 cut(s) 208, 349
TseI GCWGC 3 cut(s) 376, 581, 720
TspDTI ATGAA 2 cut(s) 280, 527
TspGWI ACGGA 3 cut(s) 45, 207, 431
TspRI CASTG 2 cut(s) 208, 349
VpaK11BI GGWCC 1 cut(s) 22
XapI RAATTY 3 cut(s) 10, 273, 533
XmiI GTMKAC 1 cut(s) 170
XmnI GAANNNNTTC 1 cut(s) 655
XspI CTAG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.