Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0010776

Physical Location & Seq

Genomic Coordinates Forward (+)

55450635 .. 55453183

Gene Structure 2549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00261080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGTTCAGCTACGATTCACTTGATGACTTCACATTCCTCAACTGCTCCTCTAAGAATACGGTACTACATGACATTCCACCGGTCTCTTGCCTCGACGATGATTATATCAGTTACATGGTCATTGCTGTGCCACGTAGTGCAGTGCCGGCGGACCACTACGGATGCTCTGTGATTTCAACAGCTAGCTCTTGCTCCGAAGCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind zf-RING_2

Protein Analysis

68

Amino Acids

7.36

Weight (kDa)

4.05

Isoelectric Point (pI)

65.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23885
fragaria_vesca	FvH4_5g04630 FvH4_5g04640
malus_domestica	MD06G1107200.v1.1 MD06G1107300.v1.1
prunus_persica	Prupe.5G120400_v2.0.a1
pyrus_communis	pycom06g10130
rosa_chinensis	RchiOBHm_Chr7g0194731
rosa_multiflora	Rmu_sc0004154.1_g000008 Rmu_sc0008861.1_g000006
rosa_roxburghii	Rroxscaffold_3G00261080 Rroxscaffold_3G00261090
rosa_rugosa	Rorug07G0017700
rosa_samantha	Rh7AG145400 Rh7BG145400 Rh7BG145500 Rh7CG149400 Rh7DG146700 Rh7DG146900
rosa_wichuraiana	Rw7G012410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	149
AdeI	CACNNNGTG	1 cut(s)	137
AfaI	GTAC	1 cut(s)	63
AgeI	ACCGGT	1 cut(s)	79
AgsI	TTSAA	1 cut(s)	177
AluBI	AGCT	3 cut(s)	9, 182, 186
AluI	AGCT	3 cut(s)	9, 182, 186
Alw26I	GTCTC	1 cut(s)	88
AsiGI	ACCGGT	1 cut(s)	79
AspS9I	GGNCC	1 cut(s)	151
AsuNHI	GCTAGC	1 cut(s)	182
AvaII	GGWCC	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	88
BfaI	CTAG	1 cut(s)	183
Bme18I	GGWCC	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	151
BmsI	GCATC	1 cut(s)	152
BmtI	GCTAGC	1 cut(s)	186
BsaAI	YACGTR	1 cut(s)	134
BsaI	GGTCTC	1 cut(s)	88
BsaWI	WCCGGW	1 cut(s)	79
Bse118I	RCCGGY	2 cut(s)	79, 145
Bse3DI	GCAATG	1 cut(s)	120
BseGI	GGATG	1 cut(s)	167
BseMI	GCAATG	1 cut(s)	120
BseRI	GAGGAG	1 cut(s)	37
BsgI	GTGCAG	1 cut(s)	159
BshTI	ACCGGT	1 cut(s)	79
BsiSI	CCGG	2 cut(s)	80, 146
BsmAI	GTCTC	1 cut(s)	88
Bso31I	GGTCTC	1 cut(s)	88
BspACI	CCGC	1 cut(s)	149
BspOI	GCTAGC	1 cut(s)	186
BspTNI	GGTCTC	1 cut(s)	88
BsrDI	GCAATG	1 cut(s)	120
BsrFI	RCCGGY	2 cut(s)	79, 145
BssAI	RCCGGY	2 cut(s)	79, 145
Bst4CI	ACNGT	1 cut(s)	61
BstBAI	YACGTR	1 cut(s)	134
BstC8I	GCNNGC	2 cut(s)	147, 184
BstDEI	CTNAG	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	167
BstMAI	GTCTC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	167
BtsI	GCAGTG	1 cut(s)	147
BtsIMutI	CAGTG	1 cut(s)	147
Cac8I	GCNNGC	2 cut(s)	147, 184
Cfr10I	RCCGGY	2 cut(s)	79, 145
Cfr13I	GGNCC	1 cut(s)	151
Csp6I	GTAC	1 cut(s)	62
CspAI	ACCGGT	1 cut(s)	79
CviAII	CATG	2 cut(s)	68, 115
CviJI	RGCY	3 cut(s)	9, 182, 186
CviKI_1	RGCY	3 cut(s)	9, 182, 186
CviQI	GTAC	1 cut(s)	62
DdeI	CTNAG	1 cut(s)	51
DraIII	CACNNNGTG	1 cut(s)	137
EciI	GGCGGA	1 cut(s)	164
Eco31I	GGTCTC	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	151
FaeI	CATG	2 cut(s)	71, 118
FaiI	YATR	3 cut(s)	69, 105, 116
FatI	CATG	2 cut(s)	67, 114
FokI	GGATG	1 cut(s)	174
FspBI	CTAG	1 cut(s)	183
HapII	CCGG	2 cut(s)	80, 146
Hin1II	CATG	2 cut(s)	71, 118
HinfI	GANTC	1 cut(s)	14
HpaII	CCGG	2 cut(s)	80, 146
Hpy188I	TCNGA	1 cut(s)	196
Hpy188III	TCNNGA	1 cut(s)	204
Hpy99I	CGWCG	1 cut(s)	98
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4IV	ACGT	1 cut(s)	133
HpyCH4V	TGCA	1 cut(s)	140
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	1 cut(s)	51
HpySE526I	ACGT	1 cut(s)	133
Hsp92II	CATG	2 cut(s)	71, 118
KroI	GCCGGC	1 cut(s)	145
KroNI	GCCGGC	1 cut(s)	147
LmnI	GCTCC	2 cut(s)	50, 197
LpnPI	CCDG	2 cut(s)	93, 159
LweI	GCATC	1 cut(s)	152
MaeI	CTAG	1 cut(s)	183
MaeII	ACGT	1 cut(s)	133
MaeIII	GTNAC	1 cut(s)	110
MnlI	CCTC	3 cut(s)	47, 58, 101
MroNI	GCCGGC	1 cut(s)	145
MslI	CAYNNNNRTG	1 cut(s)	125
MspI	CCGG	2 cut(s)	80, 146
MwoI	GCNNNNNNNGC	1 cut(s)	146
NaeI	GCCGGC	1 cut(s)	147
NgoMIV	GCCGGC	1 cut(s)	145
NheI	GCTAGC	1 cut(s)	182
NlaIII	CATG	2 cut(s)	71, 118
PdiI	GCCGGC	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	14
PinAI	ACCGGT	1 cut(s)	79
Ppu21I	YACGTR	1 cut(s)	134
PspPI	GGNCC	1 cut(s)	151
RsaI	GTAC	1 cut(s)	63
RsaNI	GTAC	1 cut(s)	62
RseI	CAYNNNNRTG	1 cut(s)	125
Sau96I	GGNCC	1 cut(s)	151
SetI	ASST	4 cut(s)	11, 136, 184, 188
SfaNI	GCATC	1 cut(s)	152
SinI	GGWCC	1 cut(s)	151
SmiMI	CAYNNNNRTG	1 cut(s)	125
SsiI	CCGC	1 cut(s)	149
SspMI	CTAG	1 cut(s)	183
TaaI	ACNGT	1 cut(s)	61
TaiI	ACGT	1 cut(s)	136
TaqI	TCGA	1 cut(s)	93
TfiI	GAWTC	1 cut(s)	14
TscAI	CASTG	1 cut(s)	147
TspGWI	ACGGA	1 cut(s)	174
TspRI	CASTG	1 cut(s)	147
VpaK11BI	GGWCC	1 cut(s)	151
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.