Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0010776

Physical Location & Seq

Genomic Coordinates Forward (+)

24688790 .. 24691604

Gene Structure 2815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1107200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGGTGCAGCCCAGGCGATGAAGAGGATACCTCGCATCAAGTTTCCTCAGAGACACCCCAAACCTTCTGGTACTGAGCCTCAGACTCAAGGTTTGGCTGGTGATTCTTCTCACACTTTCTTCTCAGGTTCAAAGGCCTCAACCACCTTGGGAGGAAAAGCTTCTGAACAACCCGAACGAACACCATTGTCCAAAGAGGAGATTGAGGCCATGATGGTGGCATCATCTGAACTTTTGTGGAGCTTCAAGAACATAGGACTATGTGTTGGATATTATTTTGACAATTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

97

Amino Acids

10.5

Weight (kDa)

8.85

Isoelectric Point (pI)

52.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23885
fragaria_vesca	FvH4_5g04630 FvH4_5g04640
malus_domestica	MD06G1107200.v1.1 MD06G1107300.v1.1
prunus_persica	Prupe.5G120400_v2.0.a1
pyrus_communis	pycom06g10130
rosa_chinensis	RchiOBHm_Chr7g0194731
rosa_multiflora	Rmu_sc0004154.1_g000008 Rmu_sc0008861.1_g000006
rosa_roxburghii	Rroxscaffold_3G00261080 Rroxscaffold_3G00261090
rosa_rugosa	Rorug07G0017700
rosa_samantha	Rh7AG145400 Rh7BG145400 Rh7BG145500 Rh7CG149400 Rh7DG146700 Rh7DG146900
rosa_wichuraiana	Rw7G012410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	73
AgsI	TTSAA	2 cut(s)	132, 247
AjnI	CCWGG	1 cut(s)	12
AluBI	AGCT	2 cut(s)	161, 243
AluI	AGCT	2 cut(s)	161, 243
Alw26I	GTCTC	1 cut(s)	46
AoxI	GGCC	2 cut(s)	135, 207
ApeKI	GCWGC	1 cut(s)	8
ArsI	GACNNNNNNTTYG	2 cut(s)	76, 108
Asp700I	GAANNNNTTC	1 cut(s)	160
AsuHPI	GGTGA	1 cut(s)	113
BbvI	GCAGC	1 cut(s)	20
BccI	CCATC	1 cut(s)	208
BciT130I	CCWGG	1 cut(s)	14
BciVI	GTATCC	1 cut(s)	21
BcoDI	GTCTC	1 cut(s)	46
BfuI	GTATCC	1 cut(s)	21
BisI	GCNGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	10
Bme1390I	CCNGG	1 cut(s)	14
BmrFI	CCNGG	1 cut(s)	14
BmsI	GCATC	2 cut(s)	45, 230
BplI	GAGNNNNNCTC	2 cut(s)	16, 48
BpuEI	CTTGAG	1 cut(s)	72
BsaJI	CCNNGG	2 cut(s)	12, 147
BseBI	CCWGG	1 cut(s)	14
BseDI	CCNNGG	2 cut(s)	12, 147
BseMII	CTCAG	4 cut(s)	62, 66, 95, 138
BseRI	GAGGAG	1 cut(s)	212
BseXI	GCAGC	1 cut(s)	20
BsgI	GTGCAG	1 cut(s)	27
BshFI	GGCC	2 cut(s)	137, 209
BsmAI	GTCTC	1 cut(s)	46
BsnI	GGCC	2 cut(s)	137, 209
BspANI	GGCC	2 cut(s)	137, 209
BspCNI	CTCAG	4 cut(s)	61, 67, 94, 137
BssECI	CCNNGG	2 cut(s)	12, 147
BssT1I	CCWWGG	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	14
Bst6I	CTCTTC	1 cut(s)	17
BstDEI	CTNAG	4 cut(s)	48, 75, 81, 124
BstMAI	GTCTC	1 cut(s)	46
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstNI	CCWGG	1 cut(s)	14
BstSCI	CCNGG	1 cut(s)	12
BstV1I	GCAGC	1 cut(s)	20
BstXI	CCANNNNNNTGG	1 cut(s)	217
BsuI	GTATCC	1 cut(s)	21
BsuRI	GGCC	2 cut(s)	137, 209
BtgZI	GCGATG	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	72
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	7 cut(s)	11, 79, 98, 137, 161, 209, 243
CviKI_1	RGCY	7 cut(s)	11, 79, 98, 137, 161, 209, 243
CviQI	GTAC	1 cut(s)	72
DdeI	CTNAG	4 cut(s)	48, 75, 81, 124
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Eco130I	CCWWGG	1 cut(s)	147
Eco147I	AGGCCT	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	12
EcoT14I	CCWWGG	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	1 cut(s)	214
FaiI	YATR	3 cut(s)	212, 254, 262
FatI	CATG	1 cut(s)	210
Fnu4HI	GCNGC	1 cut(s)	9
Fsp4HI	GCNGC	1 cut(s)	9
GluI	GCNGC	1 cut(s)	9
HaeIII	GGCC	2 cut(s)	137, 209
Hin1II	CATG	1 cut(s)	214
HindIII	AAGCTT	1 cut(s)	159
HinfI	GANTC	2 cut(s)	85, 104
HphI	GGTGA	1 cut(s)	113
Hpy188I	TCNGA	4 cut(s)	51, 84, 166, 229
Hpy188III	TCNNGA	1 cut(s)	247
HpyAV	CCTTC	1 cut(s)	75
HpyCH4V	TGCA	1 cut(s)	8
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	4 cut(s)	48, 75, 81, 124
Hsp92II	CATG	1 cut(s)	214
LmnI	GCTCC	1 cut(s)	240
LpnPI	CCDG	4 cut(s)	26, 54, 84, 111
Lsp1109I	GCAGC	1 cut(s)	20
LweI	GCATC	2 cut(s)	45, 230
MboII	GAAGA	3 cut(s)	34, 99, 112
MluCI	AATT	1 cut(s)	283
MlyI	GAGTC	1 cut(s)	79
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	8 cut(s)	18, 42, 57, 90, 146, 148, 190, 199
MroXI	GAANNNNTTC	1 cut(s)	160
MseI	TTAA	1 cut(s)	289
MslI	CAYNNNNRTG	1 cut(s)	215
MspR9I	CCNGG	1 cut(s)	14
MvaI	CCWGG	1 cut(s)	14
MwoI	GCNNNNNNNGC	1 cut(s)	14
NlaIII	CATG	1 cut(s)	214
PceI	AGGCCT	1 cut(s)	137
PdmI	GAANNNNTTC	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	104
PkrI	GCNGC	1 cut(s)	10
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	12
PspGI	CCWGG	1 cut(s)	12
RsaI	GTAC	1 cut(s)	73
RsaNI	GTAC	1 cut(s)	72
RseI	CAYNNNNRTG	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	289
SatI	GCNGC	1 cut(s)	9
SchI	GAGTC	1 cut(s)	79
ScrFI	CCNGG	1 cut(s)	14
SetI	ASST	7 cut(s)	34, 67, 94, 130, 149, 163, 245
SfaNI	GCATC	2 cut(s)	45, 230
SmiMI	CAYNNNNRTG	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	87
SmoI	CTYRAG	1 cut(s)	87
Sse9I	AATT	1 cut(s)	283
SseBI	AGGCCT	1 cut(s)	137
StuI	AGGCCT	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	12
StyI	CCWWGG	1 cut(s)	147
TasI	AATT	1 cut(s)	283
TfiI	GAWTC	1 cut(s)	104
Tru1I	TTAA	1 cut(s)	289
Tru9I	TTAA	1 cut(s)	289
TseI	GCWGC	1 cut(s)	8
TspDTI	ATGAA	1 cut(s)	35
XmnI	GAANNNNTTC	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.