Prupe.5G120400_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
12029325 .. 12031718
2394 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G120400.1

Sequence Viewer

Length: 246 bp
ATGGGTGGAGCCCAGGCGATGAAGAGAATCCCTCGCATCAAGTTTCCTCAGAGACATCCCAAACCCTCTGGTTCCGAATCTCGAATTCAAGCAGAACCTTTGGCTGGTGATGCTTCTCATACTTTCTTCTCCGGTTCAAAGGCCTCAACCACCACCACCTTAGGAGGAAAAGCTTCTCTTCAACCCGAACGAACACCAGTGTCCAAAGAGGAGATTGAGGCCATTTTGTTGGGTGGCTGCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

8.55

Weight (kDa)

9.74

Isoelectric Point (pI)

57.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 84
AfiI CCNNNNNNNGG 1 cut(s) 104
AgsI TTSAA 3 cut(s) 89, 138, 182
AjnI CCWGG 1 cut(s) 12
AluBI AGCT 1 cut(s) 173
AluI AGCT 1 cut(s) 173
Alw26I GTCTC 1 cut(s) 46
AoxI GGCC 2 cut(s) 141, 219
ApeKI GCWGC 1 cut(s) 237
ApoI RAATTY 1 cut(s) 84
Asp700I GAANNNNTTC 1 cut(s) 172
AsuHPI GGTGA 1 cut(s) 119
AxyI CCTNAGG 1 cut(s) 160
BanII GRGCYC 1 cut(s) 13
BbvI GCAGC 1 cut(s) 224
BciT130I CCWGG 1 cut(s) 14
BcoDI GTCTC 1 cut(s) 46
BisI GCNGC 1 cut(s) 238
BlsI GCNGC 1 cut(s) 239
Bme1390I CCNGG 1 cut(s) 14
BmiI GGNNCC 2 cut(s) 10, 73
BmrFI CCNGG 1 cut(s) 14
BmsI GCATC 2 cut(s) 45, 100
BplI GAGNNNNNCTC 2 cut(s) 16, 48
BsaJI CCNNGG 1 cut(s) 12
BsaWI WCCGGW 1 cut(s) 131
Bsc4I CCNNNNNNNGG 1 cut(s) 104
Bse1I ACTGG 1 cut(s) 197
Bse21I CCTNAGG 1 cut(s) 160
BseBI CCWGG 1 cut(s) 14
BseDI CCNNGG 1 cut(s) 12
BseGI GGATG 1 cut(s) 55
BseLI CCNNNNNNNGG 1 cut(s) 104
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 1 cut(s) 197
BseRI GAGGAG 1 cut(s) 224
BseXI GCAGC 1 cut(s) 224
BshFI GGCC 2 cut(s) 143, 221
BsiSI CCGG 1 cut(s) 132
BslI CCNNNNNNNGG 1 cut(s) 104
BsmAI GTCTC 1 cut(s) 46
BsnI GGCC 2 cut(s) 143, 221
Bsp1286I GDGCHC 1 cut(s) 13
BspANI GGCC 2 cut(s) 143, 221
BspCNI CTCAG 1 cut(s) 61
BspLI GGNNCC 2 cut(s) 10, 73
BsrI ACTGG 1 cut(s) 197
BssECI CCNNGG 1 cut(s) 12
Bst2UI CCWGG 1 cut(s) 14
Bst6I CTCTTC 2 cut(s) 17, 183
BstDEI CTNAG 2 cut(s) 48, 160
BstF5I GGATG 1 cut(s) 55
BstMAI GTCTC 1 cut(s) 46
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNI CCWGG 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 224
BstXI CCANNNNNNTGG 1 cut(s) 229
Bsu36I CCTNAGG 1 cut(s) 160
BsuRI GGCC 2 cut(s) 143, 221
BtgZI GCGATG 1 cut(s) 32
BtsCI GGATG 1 cut(s) 55
BtsIMutI CAGTG 1 cut(s) 204
CviJI RGCY 6 cut(s) 11, 104, 143, 173, 221, 237
CviKI_1 RGCY 6 cut(s) 11, 104, 143, 173, 221, 237
DdeI CTNAG 2 cut(s) 48, 160
Eam1104I CTCTTC 2 cut(s) 17, 183
EarI CTCTTC 2 cut(s) 17, 183
Eco147I AGGCCT 1 cut(s) 143
Eco24I GRGCYC 1 cut(s) 13
Eco81I CCTNAGG 1 cut(s) 160
EcoRI GAATTC 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 12
EcoT38I GRGCYC 1 cut(s) 13
FaiI YATR 1 cut(s) 120
FalI AAGNNNNNCTT 2 cut(s) 162, 194
Fnu4HI GCNGC 1 cut(s) 238
FokI GGATG 1 cut(s) 42
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 1 cut(s) 238
GluI GCNGC 1 cut(s) 238
HaeIII GGCC 2 cut(s) 143, 221
HapII CCGG 1 cut(s) 132
HindIII AAGCTT 1 cut(s) 171
HinfI GANTC 2 cut(s) 27, 77
HpaII CCGG 1 cut(s) 132
HphI GGTGA 1 cut(s) 119
Hpy188I TCNGA 3 cut(s) 51, 76, 245
Hpy188III TCNNGA 1 cut(s) 81
HpyCH4V TGCA 1 cut(s) 240
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 2 cut(s) 48, 160
LmnI GCTCC 1 cut(s) 8
LpnPI CCDG 5 cut(s) 26, 54, 90, 145, 210
Lsp1109I GCAGC 1 cut(s) 224
LweI GCATC 2 cut(s) 45, 100
MboII GAAGA 3 cut(s) 34, 118, 170
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 1 cut(s) 84
MnlI CCTC 7 cut(s) 42, 57, 76, 154, 158, 202, 211
MroXI GAANNNNTTC 1 cut(s) 172
MspI CCGG 1 cut(s) 132
MspR9I CCNGG 1 cut(s) 14
MvaI CCWGG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 110
NlaIV GGNNCC 2 cut(s) 10, 73
PceI AGGCCT 1 cut(s) 143
PdmI GAANNNNTTC 1 cut(s) 172
PfeI GAWTC 2 cut(s) 27, 77
PkrI GCNGC 1 cut(s) 239
Psp6I CCWGG 1 cut(s) 12
PspGI CCWGG 1 cut(s) 12
PspN4I GGNNCC 2 cut(s) 10, 73
SatI GCNGC 1 cut(s) 238
ScrFI CCNGG 1 cut(s) 14
SduI GDGCHC 1 cut(s) 13
SetI ASST 3 cut(s) 100, 161, 175
SfaNI GCATC 2 cut(s) 45, 100
Sse9I AATT 1 cut(s) 84
SseBI AGGCCT 1 cut(s) 143
StuI AGGCCT 1 cut(s) 143
StyD4I CCNGG 1 cut(s) 12
TaqI TCGA 1 cut(s) 82
TasI AATT 1 cut(s) 84
TfiI GAWTC 2 cut(s) 27, 77
TscAI CASTG 1 cut(s) 204
TseI GCWGC 1 cut(s) 237
TspDTI ATGAA 1 cut(s) 35
TspRI CASTG 1 cut(s) 204
XapI RAATTY 1 cut(s) 84
XmnI GAANNNNTTC 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.