FvH4_5g04630

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0010776
Physical Location & Seq
Forward (+)
2725251 .. 2726653
1403 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g04630.t1

Sequence Viewer

Length: 1149 bp
ATGATCTTCTCTATCTTCCTATTCATCTCCTTCCTTCCGGACATAGCAGTTGCCTCATGTCCTATATCCGTATGTAACTCAAGCAACCCTCGCCCTGATATTCGTTTCCCTTTCCGCCTAAGTAACCAATCCCCAAGCTGTGGCTTTCCAGGTTTTGATCTCTCCTGCGACTCTCAAAAACAAACGATCATCACTCTTCCATCTTCCGGTGACTTCTCGGTCGATTTCATCGACTATTGGGAGCAAACCCTCTTCATCAACGACCTTGACAAATGCCTAACCAAACGTTTCTTCGAAAATGACTTCAGTCTTGCAGGTTCACATTTCTCGCTCCCCTTTGATGCACTTGACCACTTCACATTCCTCAAATGCTCCTCTAACAAAACAGTACCAAAAGACAATCCACCGGTCAATTGCCTCGGCGATGATTACGTCAGCTACATGGTCATTGCTGTGTCGACTAGTACTGTAATGCCGCCGGACTACTACGGCTGCTCTGTGATTTCGACAGCCGTCGTCGCTCCGAAGTATCTTGATGTGGGCGTCAAGTTGGCATGGAACGAACCTGACTGTAGTTACTGTGAAAGCAATGGCCTCCTCTGTGAACTGGAGAATGTTAAAACTTCCAAGATTTGGTGCTCCTCGCAAACCGGTGCTCTCTCAACAGCTGCGAAGATTGGCATAGTGCTAGGCGTGGGAATTCCGGTGGTATTGTTCATACTTTGTTTTTGTGACTGGTCTAGTGGCGAACCCACCATCACTGAACTATCCACTATAGCCACCGGACAAATGCAGCTTCCGGTAGCCGAAAGGGCACTGGATCGTCGGACCATCGAGGCATATCCCAAGATTCAGCTTGGTGAAAGCTTGGAATTGCTGCCGGAGCCTGATAATAAGACTTGTCCAATATGCTTGTGTGATTACCAAGCTAAGGAGATACTAAGGACCGTCCCCGAGTGCAACCATTATTTCCATGCAGATTGTATAGACACCTGGCTTAGAAAGAATCCCACATGTCCTCTATGTCGGAATTTGCCCAAGAGTTCGGTGACTGATGAGAAACTCTGTTACTCGGTCATGCATGCAACATGCCCACATAGTTGCAACCAATCTCCAACCCCAACATCTCAGTCCAGTATTTATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind zf-RING_2

Protein Analysis

383

Amino Acids

42.27

Weight (kDa)

4.82

Isoelectric Point (pI)

51.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 25 - 88 1.6e-15 Wall-associated receptor kinase galacturonan-binding
zf-RING_2 PF13639 300 - 343 2.6e-14 Ring finger domain
zf-rbx1 PF12678 300 - 343 2.5e-09 RING-H2 zinc finger domain
zf-C3HC4_2 PF13923 301 - 342 2.9e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 301 - 329 1.6e-06 RING-like zinc finger
zf-C3HC4 PF00097 301 - 342 3.2e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 218
Acc36I ACCTGC 1 cut(s) 305
AccB7I CCANNNNNTGG 2 cut(s) 140, 633
AccI GTMKAC 1 cut(s) 458
AccIII TCCGGA 1 cut(s) 37
AciI CCGC 2 cut(s) 115, 476
AclI AACGTT 1 cut(s) 286
AclWI GGATC 1 cut(s) 828
AcsI RAATTY 2 cut(s) 699, 1030
AcuI CTGAAG 1 cut(s) 289
AcyI GRCGYC 1 cut(s) 543
AfaI GTAC 2 cut(s) 390, 466
AfiI CCNNNNNNNGG 4 cut(s) 140, 206, 633, 931
AflIII ACRYGT 1 cut(s) 1013
AgeI ACCGGT 2 cut(s) 406, 650
AhlI ACTAGT 1 cut(s) 461
AjnI CCWGG 2 cut(s) 148, 992
AjuI GAANNNNNNNTTGG 2 cut(s) 275, 307
AluBI AGCT 7 cut(s) 138, 438, 668, 796, 856, 867, 929
AluI AGCT 7 cut(s) 138, 438, 668, 796, 856, 867, 929
Alw21I GWGCWC 2 cut(s) 641, 658
AlwI GGATC 1 cut(s) 828
Ama87I CYCGRG 1 cut(s) 953
Aor13HI TCCGGA 1 cut(s) 37
AoxI GGCC 1 cut(s) 592
ApeKI GCWGC 4 cut(s) 492, 668, 793, 877
ApoI RAATTY 2 cut(s) 699, 1030
AsiGI ACCGGT 2 cut(s) 406, 650
AspS9I GGNCC 2 cut(s) 828, 945
AsuHPI GGTGA 3 cut(s) 221, 872, 1060
AsuII TTCGAA 1 cut(s) 294
AvaI CYCGRG 1 cut(s) 953
AvaII GGWCC 2 cut(s) 828, 945
BaeGI GKGCMC 1 cut(s) 817
Bbv12I GWGCWC 2 cut(s) 641, 658
BbvI GCAGC 4 cut(s) 479, 655, 805, 864
BccI CCATC 3 cut(s) 208, 764, 839
BceAI ACGGC 2 cut(s) 497, 505
BciT130I CCWGG 2 cut(s) 150, 994
BcuI ACTAGT 1 cut(s) 461
BfaI CTAG 3 cut(s) 462, 689, 741
BfmI CTRYAG 2 cut(s) 571, 774
BfuAI ACCTGC 1 cut(s) 305
BglI GCCNNNNNGGC 1 cut(s) 812
BisI GCNGC 5 cut(s) 476, 493, 669, 794, 878
BlsI GCNGC 5 cut(s) 477, 494, 670, 795, 879
BmcAI AGTACT 1 cut(s) 466
Bme1390I CCNGG 2 cut(s) 150, 994
Bme18I GGWCC 2 cut(s) 828, 945
BmeT110I CYCGRG 1 cut(s) 953
BmgT120I GGNCC 2 cut(s) 828, 945
BmiI GGNNCC 1 cut(s) 885
BmrFI CCNGG 2 cut(s) 150, 994
BmsI GCATC 1 cut(s) 331
BoxI GACNNNNGTC 2 cut(s) 306, 512
BpmI CTGGAG 1 cut(s) 629
Bpu10I CCTNAGC 1 cut(s) 930
Bpu14I TTCGAA 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 64
BsaHI GRCGYC 1 cut(s) 543
BsaJI CCNNGG 1 cut(s) 418
BsaWI WCCGGW 7 cut(s) 37, 206, 406, 650, 703, 782, 799
Bsc4I CCNNNNNNNGG 4 cut(s) 140, 206, 633, 931
Bse118I RCCGGY 2 cut(s) 406, 650
Bse1I ACTGG 4 cut(s) 612, 740, 822, 1134
Bse3DI GCAATG 2 cut(s) 447, 595
BseAI TCCGGA 1 cut(s) 37
BseBI CCWGG 2 cut(s) 150, 994
BseDI CCNNGG 1 cut(s) 418
BseLI CCNNNNNNNGG 4 cut(s) 140, 206, 633, 931
BseMI GCAATG 2 cut(s) 447, 595
BseMII CTCAG 1 cut(s) 1142
BseNI ACTGG 4 cut(s) 612, 740, 822, 1134
BseRI GAGGAG 3 cut(s) 364, 587, 631
BseSI GKGCMC 1 cut(s) 817
BseXI GCAGC 4 cut(s) 479, 655, 805, 864
Bsh1285I CGRYCG 1 cut(s) 222
BshFI GGCC 1 cut(s) 594
BshTI ACCGGT 2 cut(s) 406, 650
BsiEI CGRYCG 1 cut(s) 222
BsiHKAI GWGCWC 2 cut(s) 641, 658
BsiHKCI CYCGRG 1 cut(s) 953
BsiSI CCGG 9 cut(s) 38, 207, 407, 479, 651, 704, 783, 800, 881
BslFI GGGAC 1 cut(s) 935
BslI CCNNNNNNNGG 4 cut(s) 140, 206, 633, 931
BsmFI GGGAC 1 cut(s) 935
BsnI GGCC 1 cut(s) 594
BsoBI CYCGRG 1 cut(s) 953
Bsp119I TTCGAA 1 cut(s) 294
Bsp1286I GDGCHC 3 cut(s) 641, 658, 817
Bsp13I TCCGGA 1 cut(s) 37
Bsp143I GATC 4 cut(s) 3, 157, 186, 820
BspACI CCGC 2 cut(s) 115, 476
BspANI GGCC 1 cut(s) 594
BspCNI CTCAG 1 cut(s) 1141
BspEI TCCGGA 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 885
BspMI ACCTGC 1 cut(s) 305
BspPI GGATC 1 cut(s) 828
BspT104I TTCGAA 1 cut(s) 294
BsrDI GCAATG 2 cut(s) 447, 595
BsrFI RCCGGY 2 cut(s) 406, 650
BsrI ACTGG 4 cut(s) 612, 740, 822, 1134
BssAI RCCGGY 2 cut(s) 406, 650
BssECI CCNNGG 1 cut(s) 418
BssMI GATC 4 cut(s) 3, 157, 186, 820
BssNI GRCGYC 1 cut(s) 543
Bst2UI CCWGG 2 cut(s) 150, 994
Bst4CI ACNGT 5 cut(s) 388, 469, 572, 581, 949
Bst6I CTCTTC 2 cut(s) 201, 257
BstACI GRCGYC 1 cut(s) 543
BstBI TTCGAA 1 cut(s) 294
BstC8I GCNNGC 1 cut(s) 1083
BstDEI CTNAG 5 cut(s) 119, 930, 941, 998, 1128
BstKTI GATC 4 cut(s) 6, 160, 189, 823
BstMBI GATC 4 cut(s) 3, 157, 186, 820
BstMCI CGRYCG 1 cut(s) 222
BstMWI GCNNNNNNNGC 4 cut(s) 90, 518, 812, 883
BstNI CCWGG 2 cut(s) 150, 994
BstNSI RCATGY 3 cut(s) 1017, 1085, 1092
BstPAI GACNNNNGTC 2 cut(s) 306, 512
BstSCI CCNGG 2 cut(s) 148, 992
BstSFI CTRYAG 2 cut(s) 571, 774
BstSLI GKGCMC 1 cut(s) 817
BstV1I GCAGC 4 cut(s) 479, 655, 805, 864
BsuRI GGCC 1 cut(s) 594
BtgZI GCGATG 1 cut(s) 438
BtsIMutI CAGTG 2 cut(s) 759, 815
BveI ACCTGC 1 cut(s) 305
Cac8I GCNNGC 1 cut(s) 1083
Cfr10I RCCGGY 2 cut(s) 406, 650
Cfr13I GGNCC 2 cut(s) 828, 945
CseI GACGC 1 cut(s) 532
Csp6I GTAC 2 cut(s) 389, 465
CspAI ACCGGT 2 cut(s) 406, 650
CviAII CATG 9 cut(s) 57, 442, 555, 974, 1014, 1078, 1082, 1089, 1146
CviQI GTAC 2 cut(s) 389, 465
DdeI CTNAG 5 cut(s) 119, 930, 941, 998, 1128
DpnI GATC 4 cut(s) 5, 159, 188, 822
DpnII GATC 4 cut(s) 3, 157, 186, 820
DrdI GACNNNNNNGTC 1 cut(s) 218
DseDI GACNNNNNNGTC 1 cut(s) 218
Eam1104I CTCTTC 2 cut(s) 201, 257
EarI CTCTTC 2 cut(s) 201, 257
EciI GGCGGA 1 cut(s) 104
Eco47I GGWCC 2 cut(s) 828, 945
Eco57I CTGAAG 1 cut(s) 289
Eco88I CYCGRG 1 cut(s) 953
EcoRI GAATTC 1 cut(s) 699
EcoRII CCWGG 2 cut(s) 148, 992
EcoT22I ATGCAT 1 cut(s) 1083
FaeI CATG 9 cut(s) 60, 445, 558, 977, 1017, 1081, 1085, 1092, 1149
FaqI GGGAC 1 cut(s) 935
FatI CATG 9 cut(s) 56, 441, 554, 973, 1013, 1077, 1081, 1088, 1145
FblI GTMKAC 1 cut(s) 458
Fnu4HI GCNGC 5 cut(s) 476, 493, 669, 794, 878
Fsp4HI GCNGC 5 cut(s) 476, 493, 669, 794, 878
FspBI CTAG 3 cut(s) 462, 689, 741
GluI GCNGC 5 cut(s) 476, 493, 669, 794, 878
GsuI CTGGAG 1 cut(s) 629
HaeIII GGCC 1 cut(s) 594
HapII CCGG 9 cut(s) 38, 207, 407, 479, 651, 704, 783, 800, 881
HgaI GACGC 1 cut(s) 532
Hin1I GRCGYC 1 cut(s) 543
Hin1II CATG 9 cut(s) 60, 445, 558, 977, 1017, 1081, 1085, 1092, 1149
HincII GTYRAC 1 cut(s) 459
HindII GTYRAC 1 cut(s) 459
HindIII AAGCTT 1 cut(s) 865
HinfI GANTC 3 cut(s) 170, 850, 1006
HpaII CCGG 9 cut(s) 38, 207, 407, 479, 651, 704, 783, 800, 881
HphI GGTGA 3 cut(s) 221, 872, 1060
Hpy166II GTNNAC 3 cut(s) 320, 459, 605
Hpy188I TCNGA 3 cut(s) 525, 828, 1029
Hpy188III TCNNGA 2 cut(s) 38, 533
Hpy8I GTNNAC 3 cut(s) 320, 459, 605
Hpy99I CGWCG 3 cut(s) 518, 521, 828
HpyAV CCTTC 2 cut(s) 40, 44
HpyCH4III ACNGT 5 cut(s) 388, 469, 572, 581, 949
HpyCH4IV ACGT 2 cut(s) 286, 432
HpyCH4V TGCA 8 cut(s) 314, 344, 793, 960, 977, 1081, 1085, 1104
HpyF10VI GCNNNNNNNGC 4 cut(s) 90, 518, 812, 883
HpyF3I CTNAG 5 cut(s) 119, 930, 941, 998, 1128
HpySE526I ACGT 2 cut(s) 286, 432
Hsp92I GRCGYC 1 cut(s) 543
Hsp92II CATG 9 cut(s) 60, 445, 558, 977, 1017, 1081, 1085, 1092, 1149
Kpn2I TCCGGA 1 cut(s) 37
Kzo9I GATC 4 cut(s) 3, 157, 186, 820
LmnI GCTCC 6 cut(s) 241, 336, 377, 526, 644, 883
Lsp1109I GCAGC 4 cut(s) 479, 655, 805, 864
LweI GCATC 1 cut(s) 331
MaeI CTAG 3 cut(s) 462, 689, 741
MaeII ACGT 2 cut(s) 286, 432
MaeIII GTNAC 7 cut(s) 74, 122, 209, 575, 731, 1048, 1067
MalI GATC 4 cut(s) 5, 159, 188, 822
MboI GATC 4 cut(s) 3, 157, 186, 820
MboII GAAGA 6 cut(s) 7, 188, 195, 244, 283, 685
MfeI CAATTG 1 cut(s) 412
MhlI GDGCHC 3 cut(s) 641, 658, 817
MluCI AATT 4 cut(s) 412, 699, 872, 1030
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 3 cut(s) 806, 1007, 1139
Mph1103I ATGCAT 1 cut(s) 1083
MroI TCCGGA 1 cut(s) 37
MseI TTAA 1 cut(s) 618
MslI CAYNNNNRTG 1 cut(s) 452
MspA1I CMGCKG 1 cut(s) 668
MspI CCGG 9 cut(s) 38, 207, 407, 479, 651, 704, 783, 800, 881
MspR9I CCNGG 2 cut(s) 150, 994
MunI CAATTG 1 cut(s) 412
MvaI CCWGG 2 cut(s) 150, 994
MwoI GCNNNNNNNGC 4 cut(s) 90, 518, 812, 883
NdeII GATC 4 cut(s) 3, 157, 186, 820
NlaIII CATG 9 cut(s) 60, 445, 558, 977, 1017, 1081, 1085, 1092, 1149
NlaIV GGNNCC 1 cut(s) 885
NmeAIII GCCGAG 1 cut(s) 399
NmuCI GTSAC 3 cut(s) 209, 731, 1048
NsiI ATGCAT 1 cut(s) 1083
NspI RCATGY 3 cut(s) 1017, 1085, 1092
NspV TTCGAA 1 cut(s) 294
PaeI GCATGC 1 cut(s) 1085
PciI ACATGT 1 cut(s) 1013
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PfeI GAWTC 2 cut(s) 850, 1006
PflMI CCANNNNNTGG 2 cut(s) 140, 633
PinAI ACCGGT 2 cut(s) 406, 650
PkrI GCNGC 5 cut(s) 477, 494, 670, 795, 879
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
PscI ACATGT 1 cut(s) 1013
PshAI GACNNNNGTC 2 cut(s) 306, 512
Psp1406I AACGTT 1 cut(s) 286
Psp6I CCWGG 2 cut(s) 148, 992
PspGI CCWGG 2 cut(s) 148, 992
PspN4I GGNNCC 1 cut(s) 885
PspPI GGNCC 2 cut(s) 828, 945
PvuII CAGCTG 1 cut(s) 668
RsaI GTAC 2 cut(s) 390, 466
RsaNI GTAC 2 cut(s) 389, 465
RseI CAYNNNNRTG 1 cut(s) 452
SalI GTCGAC 1 cut(s) 457
SaqAI TTAA 1 cut(s) 618
SatI GCNGC 5 cut(s) 476, 493, 669, 794, 878
Sau3AI GATC 4 cut(s) 3, 157, 186, 820
Sau96I GGNCC 2 cut(s) 828, 945
ScaI AGTACT 1 cut(s) 466
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 2 cut(s) 150, 994
SduI GDGCHC 3 cut(s) 641, 658, 817
SfaNI GCATC 1 cut(s) 331
SfcI CTRYAG 2 cut(s) 571, 774
SfuI TTCGAA 1 cut(s) 294
SinI GGWCC 2 cut(s) 828, 945
SmiMI CAYNNNNRTG 1 cut(s) 452
SmlI CTYRAG 1 cut(s) 79
SmoI CTYRAG 1 cut(s) 79
SpeI ACTAGT 1 cut(s) 461
SphI GCATGC 1 cut(s) 1085
Sse9I AATT 4 cut(s) 412, 699, 872, 1030
SsiI CCGC 2 cut(s) 115, 476
SspMI CTAG 3 cut(s) 462, 689, 741
StyD4I CCNGG 2 cut(s) 148, 992
TaaI ACNGT 5 cut(s) 388, 469, 572, 581, 949
TaiI ACGT 2 cut(s) 289, 435
TaqI TCGA 6 cut(s) 222, 231, 294, 458, 506, 834
TaqII GACCGA 2 cut(s) 208, 1063
TasI AATT 4 cut(s) 412, 699, 872, 1030
TatI WGTACW 1 cut(s) 464
TauI GCSGC 1 cut(s) 478
TfiI GAWTC 2 cut(s) 850, 1006
Tru1I TTAA 1 cut(s) 618
Tru9I TTAA 1 cut(s) 618
TscAI CASTG 2 cut(s) 766, 822
TseFI GTSAC 3 cut(s) 209, 731, 1048
TseI GCWGC 4 cut(s) 492, 668, 793, 877
Tsp45I GTSAC 3 cut(s) 209, 731, 1048
TspDTI ATGAA 4 cut(s) 13, 217, 244, 706
TspGWI ACGGA 1 cut(s) 58
TspRI CASTG 2 cut(s) 766, 822
Van91I CCANNNNNTGG 2 cut(s) 140, 633
VpaK11BI GGWCC 2 cut(s) 828, 945
XapI RAATTY 2 cut(s) 699, 1030
XceI RCATGY 3 cut(s) 1017, 1085, 1092
XmiI GTMKAC 1 cut(s) 458
XspI CTAG 3 cut(s) 462, 689, 741
ZrmI AGTACT 1 cut(s) 466
Zsp2I ATGCAT 1 cut(s) 1083
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.