FvH4_5g04640

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
2727221 .. 2730464
3244 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g04640.t1

Sequence Viewer

Length: 237 bp
ATGGGTGGGGGCCAGTTGATGAAGCGAATCCCTCGCATCAAATTTCCCCAGAGACATCCAAAGCCCGCTGGTTCTGAATCCCAGACAGCAGCACCTTTAGCCAGCGATTCTGTTAAAGCTTTCTTTTCAGGTTCAAAGGCTTCTACAACTTTGGGAGGAAAAGCTTCTGAACAACCCCCAAGAACTCCAGTATCCAAAGAAGAGATTGAAGCTATTTTGTTGGGTGGCTGCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

8.13

Weight (kDa)

9.9

Isoelectric Point (pI)

63.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 66
AcsI RAATTY 1 cut(s) 41
AgsI TTSAA 2 cut(s) 135, 209
AluBI AGCT 3 cut(s) 119, 164, 212
AluI AGCT 3 cut(s) 119, 164, 212
Alw26I GTCTC 1 cut(s) 46
AoxI GGCC 1 cut(s) 10
ApeKI GCWGC 2 cut(s) 89, 228
ApoI RAATTY 1 cut(s) 41
Asp700I GAANNNNTTC 1 cut(s) 163
AspS9I GGNCC 1 cut(s) 10
BaeI ACNNNNGTAYC 2 cut(s) 174, 207
BbvI GCAGC 2 cut(s) 101, 215
BciVI GTATCC 1 cut(s) 202
BcoDI GTCTC 1 cut(s) 46
BfuI GTATCC 1 cut(s) 202
BisI GCNGC 2 cut(s) 90, 229
BlsI GCNGC 2 cut(s) 91, 230
BmgT120I GGNCC 1 cut(s) 10
BmiI GGNNCC 1 cut(s) 11
BmsI GCATC 1 cut(s) 45
BpmI CTGGAG 1 cut(s) 171
Bse1I ACTGG 2 cut(s) 13, 188
BseGI GGATG 1 cut(s) 55
BseNI ACTGG 2 cut(s) 13, 188
BseXI GCAGC 2 cut(s) 101, 215
BshFI GGCC 1 cut(s) 12
BsmAI GTCTC 1 cut(s) 46
BsnI GGCC 1 cut(s) 12
BspACI CCGC 1 cut(s) 66
BspANI GGCC 1 cut(s) 12
BspLI GGNNCC 1 cut(s) 11
BsrI ACTGG 2 cut(s) 13, 188
Bst6I CTCTTC 1 cut(s) 195
BstC8I GCNNGC 2 cut(s) 66, 103
BstF5I GGATG 1 cut(s) 55
BstMAI GTCTC 1 cut(s) 46
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstV1I GCAGC 2 cut(s) 101, 215
BsuI GTATCC 1 cut(s) 202
BsuRI GGCC 1 cut(s) 12
BtsCI GGATG 1 cut(s) 55
Cac8I GCNNGC 2 cut(s) 66, 103
Cfr13I GGNCC 1 cut(s) 10
CviJI RGCY 8 cut(s) 12, 64, 101, 119, 140, 164, 212, 228
CviKI_1 RGCY 8 cut(s) 12, 64, 101, 119, 140, 164, 212, 228
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
FauI CCCGC 1 cut(s) 73
Fnu4HI GCNGC 2 cut(s) 90, 229
FokI GGATG 1 cut(s) 42
Fsp4HI GCNGC 2 cut(s) 90, 229
GluI GCNGC 2 cut(s) 90, 229
GsuI CTGGAG 1 cut(s) 171
HaeIII GGCC 1 cut(s) 12
HindIII AAGCTT 2 cut(s) 117, 162
HinfI GANTC 3 cut(s) 27, 77, 107
Hpy188I TCNGA 3 cut(s) 76, 169, 236
HpyCH4V TGCA 1 cut(s) 231
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
LpnPI CCDG 7 cut(s) 26, 54, 62, 95, 114, 115, 201
Lsp1109I GCAGC 2 cut(s) 101, 215
LweI GCATC 1 cut(s) 45
MboII GAAGA 1 cut(s) 212
MluCI AATT 1 cut(s) 41
MnlI CCTC 2 cut(s) 42, 149
MroXI GAANNNNTTC 1 cut(s) 163
MseI TTAA 1 cut(s) 114
MspA1I CMGCKG 1 cut(s) 68
MwoI GCNNNNNNNGC 1 cut(s) 98
NlaIV GGNNCC 1 cut(s) 11
PdmI GAANNNNTTC 1 cut(s) 163
PfeI GAWTC 3 cut(s) 27, 77, 107
PkrI GCNGC 2 cut(s) 91, 230
PspN4I GGNNCC 1 cut(s) 11
PspPI GGNCC 1 cut(s) 10
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 2 cut(s) 90, 229
Sau96I GGNCC 1 cut(s) 10
SetI ASST 5 cut(s) 97, 121, 133, 166, 214
SfaNI GCATC 1 cut(s) 45
Sse9I AATT 1 cut(s) 41
SsiI CCGC 1 cut(s) 66
TasI AATT 1 cut(s) 41
TfiI GAWTC 3 cut(s) 27, 77, 107
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TseI GCWGC 2 cut(s) 89, 228
TspDTI ATGAA 1 cut(s) 35
XapI RAATTY 1 cut(s) 41
XmnI GAANNNNTTC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.