Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0010776

Physical Location & Seq

Genomic Coordinates Reverse (-)

10761591 .. 10783762

Gene Structure 22172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG145500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGATCACCCTCCCATCCTCCGGCGACTTCTCGGTCGATTCCATCGACTACGGGTACCAAACCCTCTTCATCAACGACCTTGAGAAATGCCTAACCAAACTCGAAAAGGACTTCAGTCTTGCAGGTTCACCCTTCATGTTCAGCTACGATTCACTTGATGACTTCACATTCCTCAACTGCTCCTCTAAGAATACAGTACTACATGACATTCCACCGGTCTCTTGCCTCGACGATGATTATATCAGCTACATGGTCATTGCTGTGCCGCGTAGTGCAGTGCCGGCGGACCACTACGGATGCTCTGTGATTTCAACAGCTCTCGCTCCGAAGCATCTTGATTTGGGTGTCGAGTTGACATGGGACAAACCTGACTGTAGTTTATGTGAAAACAAAGCTCTTCTTTGTGGACTGGAGCATGGTAAAAGTTCCAGTATACGGTGCTCCTCTCTTTCTACGGAAACCGTTAATGGAGCTAGCACTGCAATTTCTATAGTTTCAGCTAAGGAGATGGTAAGGACGGTACCCACCCGAGTGCAACCATTATTTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind zf-RING_2

Protein Analysis

183

Amino Acids

19.92

Weight (kDa)

4.63

Isoelectric Point (pI)

35.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23885
fragaria_vesca	FvH4_5g04630 FvH4_5g04640
malus_domestica	MD06G1107200.v1.1 MD06G1107300.v1.1
prunus_persica	Prupe.5G120400_v2.0.a1
pyrus_communis	pycom06g10130
rosa_chinensis	RchiOBHm_Chr7g0194731
rosa_multiflora	Rmu_sc0004154.1_g000008 Rmu_sc0008861.1_g000006
rosa_roxburghii	Rroxscaffold_3G00261080 Rroxscaffold_3G00261090
rosa_rugosa	Rorug07G0017700
rosa_samantha	Rh7AG145400 Rh7BG145400 Rh7BG145500 Rh7CG149400 Rh7DG146700 Rh7DG146900
rosa_wichuraiana	Rw7G012410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	32
Acc36I	ACCTGC	1 cut(s)	113
Acc65I	GGTACC	2 cut(s)	54, 520
AccB1I	GGYRCC	2 cut(s)	54, 520
AccI	GTMKAC	1 cut(s)	433
AccII	CGCG	1 cut(s)	268
AciI	CCGC	2 cut(s)	266, 284
AcuI	CTGAAG	1 cut(s)	97
AfaI	GTAC	3 cut(s)	56, 198, 522
AfiI	CCNNNNNNNGG	2 cut(s)	20, 435
AgeI	ACCGGT	1 cut(s)	214
AgsI	TTSAA	1 cut(s)	312
AleI	CACNNNNGTG	1 cut(s)	530
AluBI	AGCT	6 cut(s)	144, 246, 317, 395, 473, 500
AluI	AGCT	6 cut(s)	144, 246, 317, 395, 473, 500
Alw21I	GWGCWC	1 cut(s)	443
Alw26I	GTCTC	1 cut(s)	223
Ama87I	CYCGRG	1 cut(s)	528
AsiGI	ACCGGT	1 cut(s)	214
Asp718I	GGTACC	2 cut(s)	54, 520
AspS9I	GGNCC	1 cut(s)	286
AsuHPI	GGTGA	1 cut(s)	120
AsuNHI	GCTAGC	1 cut(s)	473
AvaI	CYCGRG	1 cut(s)	528
AvaII	GGWCC	1 cut(s)	286
BanI	GGYRCC	2 cut(s)	54, 520
Bbv12I	GWGCWC	1 cut(s)	443
BccI	CCATC	3 cut(s)	22, 50, 502
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	223
BfaI	CTAG	1 cut(s)	474
BfmI	CTRYAG	2 cut(s)	373, 489
BfuAI	ACCTGC	1 cut(s)	113
BisI	GCNGC	1 cut(s)	266
BlsI	GCNGC	1 cut(s)	267
BmcAI	AGTACT	1 cut(s)	198
Bme18I	GGWCC	1 cut(s)	286
BmeT110I	CYCGRG	1 cut(s)	528
BmgT120I	GGNCC	1 cut(s)	286
BmiI	GGNNCC	2 cut(s)	56, 522
BmsI	GCATC	2 cut(s)	287, 340
BmtI	GCTAGC	1 cut(s)	477
BoxI	GACNNNNGTC	1 cut(s)	114
BpmI	CTGGAG	1 cut(s)	431
Bpu10I	CCTNAGC	1 cut(s)	501
BpuEI	CTTGAG	1 cut(s)	101
BsaI	GGTCTC	1 cut(s)	223
BsaWI	WCCGGW	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	2 cut(s)	20, 435
Bse118I	RCCGGY	2 cut(s)	214, 280
Bse1I	ACTGG	2 cut(s)	414, 429
Bse3DI	GCAATG	1 cut(s)	255
BseGI	GGATG	2 cut(s)	14, 302
BseLI	CCNNNNNNNGG	2 cut(s)	20, 435
BseMI	GCAATG	1 cut(s)	255
BseNI	ACTGG	2 cut(s)	414, 429
BseRI	GAGGAG	2 cut(s)	172, 433
BsgI	GTGCAG	1 cut(s)	294
Bsh1236I	CGCG	1 cut(s)	268
Bsh1285I	CGRYCG	1 cut(s)	36
BshNI	GGYRCC	2 cut(s)	54, 520
BshTI	ACCGGT	1 cut(s)	214
BsiEI	CGRYCG	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	443
BsiHKCI	CYCGRG	1 cut(s)	528
BsiSI	CCGG	3 cut(s)	21, 215, 281
BslFI	GGGAC	1 cut(s)	374
BslI	CCNNNNNNNGG	2 cut(s)	20, 435
BsmAI	GTCTC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	374
Bso31I	GGTCTC	1 cut(s)	223
BsoBI	CYCGRG	1 cut(s)	528
Bsp1286I	GDGCHC	1 cut(s)	443
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	2 cut(s)	266, 284
BspFNI	CGCG	1 cut(s)	268
BspLI	GGNNCC	2 cut(s)	56, 522
BspMI	ACCTGC	1 cut(s)	113
BspOI	GCTAGC	1 cut(s)	477
BspQI	GCTCTTC	1 cut(s)	402
BspT107I	GGYRCC	2 cut(s)	54, 520
BspTNI	GGTCTC	1 cut(s)	223
BsrDI	GCAATG	1 cut(s)	255
BsrFI	RCCGGY	2 cut(s)	214, 280
BsrI	ACTGG	2 cut(s)	414, 429
BssAI	RCCGGY	2 cut(s)	214, 280
BssMI	GATC	1 cut(s)	3
BssNAI	GTATAC	1 cut(s)	434
Bst1107I	GTATAC	1 cut(s)	434
Bst4CI	ACNGT	5 cut(s)	196, 374, 438, 463, 520
Bst6I	CTCTTC	2 cut(s)	71, 402
BstC8I	GCNNGC	2 cut(s)	282, 475
BstDEI	CTNAG	2 cut(s)	186, 501
BstF5I	GGATG	2 cut(s)	14, 302
BstFNI	CGCG	1 cut(s)	268
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	3
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 479
BstPAI	GACNNNNGTC	1 cut(s)	114
BstSFI	CTRYAG	2 cut(s)	373, 489
BstUI	CGCG	1 cut(s)	268
BstZ17I	GTATAC	1 cut(s)	434
BtsCI	GGATG	2 cut(s)	14, 302
BtsI	GCAGTG	2 cut(s)	282, 477
BtsIMutI	CAGTG	2 cut(s)	282, 477
BveI	ACCTGC	1 cut(s)	113
Cac8I	GCNNGC	2 cut(s)	282, 475
Cfr10I	RCCGGY	2 cut(s)	214, 280
Cfr13I	GGNCC	1 cut(s)	286
Csp6I	GTAC	3 cut(s)	55, 197, 521
CspAI	ACCGGT	1 cut(s)	214
CviAII	CATG	5 cut(s)	136, 203, 250, 357, 416
CviJI	RGCY	6 cut(s)	144, 246, 317, 395, 473, 500
CviKI_1	RGCY	6 cut(s)	144, 246, 317, 395, 473, 500
CviQI	GTAC	3 cut(s)	55, 197, 521
DdeI	CTNAG	2 cut(s)	186, 501
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
DrdI	GACNNNNNNGTC	1 cut(s)	32
DseDI	GACNNNNNNGTC	1 cut(s)	32
Eam1104I	CTCTTC	2 cut(s)	71, 402
EarI	CTCTTC	2 cut(s)	71, 402
EciI	GGCGGA	1 cut(s)	299
Eco31I	GGTCTC	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	286
Eco57I	CTGAAG	1 cut(s)	97
Eco88I	CYCGRG	1 cut(s)	528
FaeI	CATG	5 cut(s)	139, 206, 253, 360, 419
FalI	AAGNNNNNCTT	2 cut(s)	384, 416
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	5 cut(s)	135, 202, 249, 356, 415
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	433
Fnu4HI	GCNGC	1 cut(s)	266
FokI	GGATG	1 cut(s)	309
Fsp4HI	GCNGC	1 cut(s)	266
FspBI	CTAG	1 cut(s)	474
GluI	GCNGC	1 cut(s)	266
GsuI	CTGGAG	1 cut(s)	431
HapII	CCGG	3 cut(s)	21, 215, 281
Hin1II	CATG	5 cut(s)	139, 206, 253, 360, 419
HincII	GTYRAC	1 cut(s)	354
HindII	GTYRAC	1 cut(s)	354
HinfI	GANTC	2 cut(s)	38, 149
HpaII	CCGG	3 cut(s)	21, 215, 281
HphI	GGTGA	1 cut(s)	120
Hpy166II	GTNNAC	4 cut(s)	128, 354, 407, 434
Hpy188I	TCNGA	1 cut(s)	327
Hpy188III	TCNNGA	1 cut(s)	335
Hpy8I	GTNNAC	4 cut(s)	128, 354, 407, 434
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	5 cut(s)	196, 374, 438, 463, 520
HpyCH4V	TGCA	4 cut(s)	122, 275, 482, 535
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 479
HpyF3I	CTNAG	2 cut(s)	186, 501
Hsp92II	CATG	5 cut(s)	139, 206, 253, 360, 419
KpnI	GGTACC	2 cut(s)	58, 524
KroI	GCCGGC	1 cut(s)	280
KroNI	GCCGGC	1 cut(s)	282
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	1 cut(s)	3
LguI	GCTCTTC	1 cut(s)	402
LmnI	GCTCC	5 cut(s)	185, 328, 412, 446, 470
LpnPI	CCDG	7 cut(s)	34, 108, 228, 294, 381, 395, 442
LweI	GCATC	2 cut(s)	287, 340
MaeI	CTAG	1 cut(s)	474
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	2 cut(s)	58, 389
MhlI	GDGCHC	1 cut(s)	443
MluCI	AATT	1 cut(s)	483
MnlI	CCTC	7 cut(s)	20, 28, 74, 182, 193, 236, 454
MroNI	GCCGGC	1 cut(s)	280
MseI	TTAA	1 cut(s)	465
MslI	CAYNNNNRTG	2 cut(s)	260, 530
MspI	CCGG	3 cut(s)	21, 215, 281
MvnI	CGCG	1 cut(s)	268
MwoI	GCNNNNNNNGC	2 cut(s)	281, 479
NaeI	GCCGGC	1 cut(s)	282
NdeII	GATC	1 cut(s)	3
NgoMIV	GCCGGC	1 cut(s)	280
NheI	GCTAGC	1 cut(s)	473
NlaIII	CATG	5 cut(s)	139, 206, 253, 360, 419
NlaIV	GGNNCC	2 cut(s)	56, 522
OliI	CACNNNNGTG	1 cut(s)	530
PciSI	GCTCTTC	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PdiI	GCCGGC	1 cut(s)	282
PfeI	GAWTC	2 cut(s)	38, 149
PinAI	ACCGGT	1 cut(s)	214
PkrI	GCNGC	1 cut(s)	267
PshAI	GACNNNNGTC	1 cut(s)	114
PspN4I	GGNNCC	2 cut(s)	56, 522
PspPI	GGNCC	1 cut(s)	286
RsaI	GTAC	3 cut(s)	56, 198, 522
RsaNI	GTAC	3 cut(s)	55, 197, 521
RseI	CAYNNNNRTG	2 cut(s)	260, 530
SapI	GCTCTTC	1 cut(s)	402
SaqAI	TTAA	1 cut(s)	465
SatI	GCNGC	1 cut(s)	266
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	286
ScaI	AGTACT	1 cut(s)	198
SduI	GDGCHC	1 cut(s)	443
SetI	ASST	9 cut(s)	81, 127, 146, 248, 319, 370, 397, 475, 502
SfaNI	GCATC	2 cut(s)	287, 340
SfcI	CTRYAG	2 cut(s)	373, 489
SinI	GGWCC	1 cut(s)	286
SmiMI	CAYNNNNRTG	2 cut(s)	260, 530
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	1 cut(s)	483
SsiI	CCGC	2 cut(s)	266, 284
SspMI	CTAG	1 cut(s)	474
TaaI	ACNGT	5 cut(s)	196, 374, 438, 463, 520
TaqI	TCGA	5 cut(s)	36, 45, 102, 228, 348
TaqII	GACCGA	1 cut(s)	22
TasI	AATT	1 cut(s)	483
TatI	WGTACW	1 cut(s)	196
TauI	GCSGC	1 cut(s)	268
TfiI	GAWTC	2 cut(s)	38, 149
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TscAI	CASTG	2 cut(s)	282, 484
TspDTI	ATGAA	2 cut(s)	58, 124
TspGWI	ACGGA	2 cut(s)	309, 470
TspRI	CASTG	2 cut(s)	282, 484
VpaK11BI	GGWCC	1 cut(s)	286
XmiI	GTMKAC	1 cut(s)	433
XspI	CTAG	1 cut(s)	474
ZrmI	AGTACT	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.