Rh7DG146900

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0010776
Physical Location & Seq
Reverse (-)
12570938 .. 12572636
1699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG146900.1

Sequence Viewer

Length: 645 bp
ATGCCTAACCAAACTGTTCTTCGAAAAGGAGCAGGTTCACCCCTCATGTTCATCTACGATTCACTTGATGACTTCACAATATTCCTCAACTGCTCCTCTAAGAATACATTACTACATGACATTCCACCGGTCACTTGCCTCGACGATGATTATATCAGCTACATGGTCATTGCTGTGCCGCGTAGTGCAGTGCCGGCGGACCACTACGGATGCTCTGTGATTTCAACAGCTCTCGCTCCGAAGCATCTTGATTTGGGTGTCGAGTTGACATGGGACAAACCTGACTGTAGTTTATGTGAAAACAAAGCTCTTCTTTGTGGACTGGAGCATGGTAAAAAGTTCCAGTATACGGTGCTCCTCTCTTTCTACGGAAACCGCGACTTGACGATGAACTCGAGGCTCTGGTGGGGCGGAGGCGGCGACGTACTGGCAACCTGTACAGGCCGAAAACGCCGACGACCGGTTCCAGATCAAGATGGAGAAGCCGATCTACGACACGGTCGACGAGGACTAGTACGACGCGATCATCGCCAAGCGTCGCGAGGAGTTCAGGGACTTCATCTAGGACGACGACTGCCTAGGGTACTGCGACGACGGCAAGGAAGAGGACTGGACCCGCCGCGGGATTCCGACGTCGTCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind zf-RING_2

Protein Analysis

214

Amino Acids

23.92

Weight (kDa)

9.17

Isoelectric Point (pI)

57.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 636
Acc36I ACCTGC 1 cut(s) 23
AccI GTMKAC 2 cut(s) 347, 502
AccII CGCG 5 cut(s) 181, 378, 522, 541, 622
AciI CCGC 8 cut(s) 179, 197, 376, 411, 417, 617, 620, 622
AcyI GRCGYC 1 cut(s) 633
AfaI GTAC 4 cut(s) 426, 439, 516, 585
AfiI CCNNNNNNNGG 3 cut(s) 349, 460, 622
AgeI ACCGGT 2 cut(s) 127, 460
AgsI TTSAA 1 cut(s) 225
AhlI ACTAGT 1 cut(s) 511
AjuI GAANNNNNNNTTGG 1 cut(s) 35
AluBI AGCT 3 cut(s) 159, 230, 308
AluI AGCT 3 cut(s) 159, 230, 308
Alw21I GWGCWC 1 cut(s) 357
Ama87I CYCGRG 1 cut(s) 394
AoxI GGCC 1 cut(s) 442
AsiGI ACCGGT 2 cut(s) 127, 460
AspA2I CCTAGG 1 cut(s) 578
AspS9I GGNCC 2 cut(s) 199, 613
AsuHPI GGTGA 1 cut(s) 30
AsuII TTCGAA 1 cut(s) 22
AvaI CYCGRG 1 cut(s) 394
AvaII GGWCC 2 cut(s) 199, 613
AvrII CCTAGG 1 cut(s) 578
BarI GAAGNNNNNNTAC 2 cut(s) 474, 506
Bbv12I GWGCWC 1 cut(s) 357
BccI CCATC 1 cut(s) 470
BceAI ACGGC 1 cut(s) 611
BcuI ACTAGT 1 cut(s) 511
BfaI CTAG 3 cut(s) 512, 563, 579
BfmI CTRYAG 1 cut(s) 286
BfuAI ACCTGC 1 cut(s) 23
BisI GCNGC 3 cut(s) 179, 418, 620
BlnI CCTAGG 1 cut(s) 578
BlsI GCNGC 3 cut(s) 180, 419, 621
Bme18I GGWCC 2 cut(s) 199, 613
BmeT110I CYCGRG 1 cut(s) 394
BmgT120I GGNCC 2 cut(s) 199, 613
BmiI GGNNCC 2 cut(s) 465, 615
BmsI GCATC 2 cut(s) 200, 253
BpmI CTGGAG 1 cut(s) 344
Bpu14I TTCGAA 1 cut(s) 22
BsaHI GRCGYC 1 cut(s) 633
BsaJI CCNNGG 2 cut(s) 578, 620
BsaWI WCCGGW 2 cut(s) 127, 460
Bsc4I CCNNNNNNNGG 3 cut(s) 349, 460, 622
Bse118I RCCGGY 3 cut(s) 127, 193, 460
Bse1I ACTGG 4 cut(s) 327, 343, 432, 615
Bse3DI GCAATG 1 cut(s) 168
BseDI CCNNGG 2 cut(s) 578, 620
BseGI GGATG 1 cut(s) 215
BseLI CCNNNNNNNGG 3 cut(s) 349, 460, 622
BseMI GCAATG 1 cut(s) 168
BseNI ACTGG 4 cut(s) 327, 343, 432, 615
BseRI GAGGAG 3 cut(s) 85, 347, 558
BsgI GTGCAG 1 cut(s) 207
Bsh1236I CGCG 5 cut(s) 181, 378, 522, 541, 622
Bsh1285I CGRYCG 2 cut(s) 461, 502
BshFI GGCC 1 cut(s) 444
BshTI ACCGGT 2 cut(s) 127, 460
BsiEI CGRYCG 2 cut(s) 461, 502
BsiHKAI GWGCWC 1 cut(s) 357
BsiHKCI CYCGRG 1 cut(s) 394
BsiSI CCGG 3 cut(s) 128, 194, 461
BslFI GGGAC 2 cut(s) 287, 567
BslI CCNNNNNNNGG 3 cut(s) 349, 460, 622
BsmFI GGGAC 2 cut(s) 287, 567
BsnI GGCC 1 cut(s) 444
BsoBI CYCGRG 1 cut(s) 394
Bsp119I TTCGAA 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 357
Bsp1407I TGTACA 1 cut(s) 437
Bsp143I GATC 3 cut(s) 469, 487, 523
Bsp68I TCGCGA 1 cut(s) 541
BspACI CCGC 8 cut(s) 179, 197, 376, 411, 417, 617, 620, 622
BspANI GGCC 1 cut(s) 444
BspFNI CGCG 5 cut(s) 181, 378, 522, 541, 622
BspLI GGNNCC 2 cut(s) 465, 615
BspMI ACCTGC 1 cut(s) 23
BspQI GCTCTTC 1 cut(s) 315
BspT104I TTCGAA 1 cut(s) 22
BsrDI GCAATG 1 cut(s) 168
BsrFI RCCGGY 3 cut(s) 127, 193, 460
BsrGI TGTACA 1 cut(s) 437
BsrI ACTGG 4 cut(s) 327, 343, 432, 615
BssAI RCCGGY 3 cut(s) 127, 193, 460
BssECI CCNNGG 2 cut(s) 578, 620
BssMI GATC 3 cut(s) 469, 487, 523
BssNAI GTATAC 1 cut(s) 348
BssNI GRCGYC 1 cut(s) 633
BssT1I CCWWGG 1 cut(s) 578
Bst1107I GTATAC 1 cut(s) 348
Bst4CI ACNGT 4 cut(s) 16, 287, 352, 500
Bst6I CTCTTC 2 cut(s) 315, 598
BstACI GRCGYC 1 cut(s) 633
BstAUI TGTACA 1 cut(s) 437
BstBI TTCGAA 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 1 cut(s) 99
BstDSI CCRYGG 1 cut(s) 620
BstF5I GGATG 1 cut(s) 215
BstFNI CGCG 5 cut(s) 181, 378, 522, 541, 622
BstKTI GATC 3 cut(s) 472, 490, 526
BstMBI GATC 3 cut(s) 469, 487, 523
BstMCI CGRYCG 2 cut(s) 461, 502
BstMWI GCNNNNNNNGC 5 cut(s) 194, 417, 450, 528, 595
BstSFI CTRYAG 1 cut(s) 286
BstUI CGCG 5 cut(s) 181, 378, 522, 541, 622
BstZ17I GTATAC 1 cut(s) 348
BsuRI GGCC 1 cut(s) 444
BtgI CCRYGG 1 cut(s) 620
BtgZI GCGATG 1 cut(s) 512
BtsCI GGATG 1 cut(s) 215
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 195
BtuMI TCGCGA 1 cut(s) 541
BveI ACCTGC 1 cut(s) 23
Cac8I GCNNGC 1 cut(s) 195
Cfr10I RCCGGY 3 cut(s) 127, 193, 460
Cfr13I GGNCC 2 cut(s) 199, 613
Cfr42I CCGCGG 1 cut(s) 623
CseI GACGC 2 cut(s) 525, 528
Csp6I GTAC 4 cut(s) 425, 438, 515, 584
CspAI ACCGGT 2 cut(s) 127, 460
CviAII CATG 5 cut(s) 46, 116, 163, 270, 329
CviJI RGCY 6 cut(s) 159, 230, 308, 400, 444, 485
CviKI_1 RGCY 6 cut(s) 159, 230, 308, 400, 444, 485
CviQI GTAC 4 cut(s) 425, 438, 515, 584
DdeI CTNAG 1 cut(s) 99
DpnI GATC 3 cut(s) 471, 489, 525
DpnII GATC 3 cut(s) 469, 487, 523
Eam1104I CTCTTC 2 cut(s) 315, 598
EarI CTCTTC 2 cut(s) 315, 598
EciI GGCGGA 2 cut(s) 212, 426
Eco130I CCWWGG 1 cut(s) 578
Eco47I GGWCC 2 cut(s) 199, 613
Eco88I CYCGRG 1 cut(s) 394
EcoT14I CCWWGG 1 cut(s) 578
ErhI CCWWGG 1 cut(s) 578
FaeI CATG 5 cut(s) 49, 119, 166, 273, 332
FaiI YATR 8 cut(s) 47, 117, 153, 164, 271, 295, 330, 348
FalI AAGNNNNNCTT 2 cut(s) 297, 329
FaqI GGGAC 2 cut(s) 287, 567
FatI CATG 5 cut(s) 45, 115, 162, 269, 328
FauI CCCGC 2 cut(s) 615, 624
FblI GTMKAC 2 cut(s) 347, 502
Fnu4HI GCNGC 3 cut(s) 179, 418, 620
FokI GGATG 1 cut(s) 222
Fsp4HI GCNGC 3 cut(s) 179, 418, 620
FspBI CTAG 3 cut(s) 512, 563, 579
GluI GCNGC 3 cut(s) 179, 418, 620
GsuI CTGGAG 1 cut(s) 344
HaeIII GGCC 1 cut(s) 444
HapII CCGG 3 cut(s) 128, 194, 461
HgaI GACGC 2 cut(s) 525, 528
Hin1I GRCGYC 1 cut(s) 633
Hin1II CATG 5 cut(s) 49, 119, 166, 273, 332
HincII GTYRAC 2 cut(s) 267, 503
HindII GTYRAC 2 cut(s) 267, 503
HinfI GANTC 2 cut(s) 59, 626
HpaII CCGG 3 cut(s) 128, 194, 461
HphI GGTGA 1 cut(s) 30
Hpy166II GTNNAC 5 cut(s) 38, 267, 320, 348, 503
Hpy188I TCNGA 3 cut(s) 240, 631, 641
Hpy188III TCNNGA 4 cut(s) 248, 467, 473, 540
Hpy8I GTNNAC 5 cut(s) 38, 267, 320, 348, 503
HpyCH4III ACNGT 4 cut(s) 16, 287, 352, 500
HpyCH4IV ACGT 2 cut(s) 423, 633
HpyCH4V TGCA 1 cut(s) 188
HpyF10VI GCNNNNNNNGC 5 cut(s) 194, 417, 450, 528, 595
HpyF3I CTNAG 1 cut(s) 99
HpySE526I ACGT 2 cut(s) 423, 633
Hsp92I GRCGYC 1 cut(s) 633
Hsp92II CATG 5 cut(s) 49, 119, 166, 273, 332
KroI GCCGGC 1 cut(s) 193
KroNI GCCGGC 1 cut(s) 195
KspI CCGCGG 1 cut(s) 623
Kzo9I GATC 3 cut(s) 469, 487, 523
LguI GCTCTTC 1 cut(s) 315
LmnI GCTCC 5 cut(s) 29, 98, 241, 325, 360
LweI GCATC 2 cut(s) 200, 253
MaeI CTAG 3 cut(s) 512, 563, 579
MaeII ACGT 2 cut(s) 423, 633
MaeIII GTNAC 1 cut(s) 130
MalI GATC 3 cut(s) 471, 489, 525
MboI GATC 3 cut(s) 469, 487, 523
MboII GAAGA 3 cut(s) 11, 302, 615
MhlI GDGCHC 1 cut(s) 357
MmeI TCCRAC 1 cut(s) 619
MroNI GCCGGC 1 cut(s) 193
MslI CAYNNNNRTG 1 cut(s) 173
MspA1I CMGCKG 1 cut(s) 622
MspI CCGG 3 cut(s) 128, 194, 461
MvnI CGCG 5 cut(s) 181, 378, 522, 541, 622
MwoI GCNNNNNNNGC 5 cut(s) 194, 417, 450, 528, 595
NaeI GCCGGC 1 cut(s) 195
NdeII GATC 3 cut(s) 469, 487, 523
NgoMIV GCCGGC 1 cut(s) 193
NlaIII CATG 5 cut(s) 49, 119, 166, 273, 332
NlaIV GGNNCC 2 cut(s) 465, 615
NmuCI GTSAC 1 cut(s) 130
NruI TCGCGA 1 cut(s) 541
NspV TTCGAA 1 cut(s) 22
PaeR7I CTCGAG 1 cut(s) 394
PciSI GCTCTTC 1 cut(s) 315
PcsI WCGNNNNNNNCGW 3 cut(s) 375, 392, 499
PdiI GCCGGC 1 cut(s) 195
PfeI GAWTC 2 cut(s) 59, 626
PflFI GACNNNGTC 2 cut(s) 498, 635
PinAI ACCGGT 2 cut(s) 127, 460
PkrI GCNGC 3 cut(s) 180, 419, 621
PspN4I GGNNCC 2 cut(s) 465, 615
PspPI GGNCC 2 cut(s) 199, 613
PspXI VCTCGAGB 1 cut(s) 394
PsyI GACNNNGTC 2 cut(s) 498, 635
RruI TCGCGA 1 cut(s) 541
RsaI GTAC 4 cut(s) 426, 439, 516, 585
RsaNI GTAC 4 cut(s) 425, 438, 515, 584
RseI CAYNNNNRTG 1 cut(s) 173
SacII CCGCGG 1 cut(s) 623
SalI GTCGAC 1 cut(s) 501
SapI GCTCTTC 1 cut(s) 315
SatI GCNGC 3 cut(s) 179, 418, 620
Sau3AI GATC 3 cut(s) 469, 487, 523
Sau96I GGNCC 2 cut(s) 199, 613
SduI GDGCHC 1 cut(s) 357
SetI ASST 8 cut(s) 37, 161, 232, 283, 310, 426, 437, 636
SfaNI GCATC 2 cut(s) 200, 253
SfcI CTRYAG 1 cut(s) 286
Sfr274I CTCGAG 1 cut(s) 394
Sfr303I CCGCGG 1 cut(s) 623
SfuI TTCGAA 1 cut(s) 22
SgrBI CCGCGG 1 cut(s) 623
SinI GGWCC 2 cut(s) 199, 613
SlaI CTCGAG 1 cut(s) 394
SmiMI CAYNNNNRTG 1 cut(s) 173
SmlI CTYRAG 1 cut(s) 394
SmoI CTYRAG 1 cut(s) 394
SpeI ACTAGT 1 cut(s) 511
SsiI CCGC 8 cut(s) 179, 197, 376, 411, 417, 617, 620, 622
SspI AATATT 1 cut(s) 81
SspMI CTAG 3 cut(s) 512, 563, 579
StyI CCWWGG 1 cut(s) 578
TaaI ACNGT 4 cut(s) 16, 287, 352, 500
TaiI ACGT 2 cut(s) 426, 636
TaqI TCGA 5 cut(s) 22, 141, 261, 395, 502
TatI WGTACW 1 cut(s) 437
TauI GCSGC 3 cut(s) 181, 420, 622
TfiI GAWTC 2 cut(s) 59, 626
TscAI CASTG 1 cut(s) 195
TseFI GTSAC 1 cut(s) 130
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 3 cut(s) 40, 404, 548
TspGWI ACGGA 2 cut(s) 222, 384
TspRI CASTG 1 cut(s) 195
Tth111I GACNNNGTC 2 cut(s) 498, 635
VpaK11BI GGWCC 2 cut(s) 199, 613
XhoI CTCGAG 1 cut(s) 394
XmaJI CCTAGG 1 cut(s) 578
XmiI GTMKAC 2 cut(s) 347, 502
XspI CTAG 3 cut(s) 512, 563, 579
ZraI GACGTC 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.