pycom06g10130

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0010776
Physical Location & Seq
Forward (+)
15523889 .. 15526047
2159 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g10130.3

Sequence Viewer

Length: 369 bp
ATGATAATGACCTTTATACGCAACTTCTGTCCATCCCCGAGTTGCCAAACAAATCGCCGGTGGAAGATTCTCGCTCTTTTTTTTTCAATCGTCGTCTCCGGAGGAACTGGTACAACAGAAGAGAGAGAGAGAGAGATGGGTGGAGCCCAGGCGATGAAGAGGATACCTCGCATCAAGTTTCCTCAGAGACACCCAAAACCTTCTGGTACCGAGCCTCAGACTCAAGGTTTGGCTGGTGATTCTTCTCACACTTTCTTCTCAGGTTCAAAGGCCTCAACCACCTTGGGAGGAAAAGCTTCTGAACAACCCGAACGAACACCGTTGTCCAAAGAGGAGATTGAGGCCATTATGTTGGGTGGCATCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.39

Weight (kDa)

9.69

Isoelectric Point (pI)

60.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 206
AccB1I GGYRCC 1 cut(s) 206
AccIII TCCGGA 1 cut(s) 98
AfaI GTAC 2 cut(s) 112, 208
AgsI TTSAA 2 cut(s) 87, 267
AjnI CCWGG 1 cut(s) 147
AluBI AGCT 1 cut(s) 296
AluI AGCT 1 cut(s) 296
Alw26I GTCTC 2 cut(s) 100, 181
Ama87I CYCGRG 1 cut(s) 37
Aor13HI TCCGGA 1 cut(s) 98
AoxI GGCC 2 cut(s) 270, 342
ArsI GACNNNNNNTTYG 2 cut(s) 211, 243
Asp700I GAANNNNTTC 1 cut(s) 295
Asp718I GGTACC 1 cut(s) 206
AsuHPI GGTGA 1 cut(s) 248
AvaI CYCGRG 1 cut(s) 37
BanI GGYRCC 1 cut(s) 206
BanII GRGCYC 1 cut(s) 148
BccI CCATC 2 cut(s) 40, 130
BciT130I CCWGG 1 cut(s) 149
BciVI GTATCC 1 cut(s) 156
BcoDI GTCTC 2 cut(s) 100, 181
BfuI GTATCC 1 cut(s) 156
Bme1390I CCNGG 1 cut(s) 149
BmeT110I CYCGRG 1 cut(s) 37
BmiI GGNNCC 2 cut(s) 145, 208
BmrFI CCNGG 1 cut(s) 149
BmsI GCATC 1 cut(s) 180
BplI GAGNNNNNCTC 2 cut(s) 151, 183
BpuEI CTTGAG 1 cut(s) 207
BsaJI CCNNGG 2 cut(s) 147, 282
BsaWI WCCGGW 1 cut(s) 98
Bse118I RCCGGY 1 cut(s) 57
Bse1I ACTGG 1 cut(s) 112
BseAI TCCGGA 1 cut(s) 98
BseBI CCWGG 1 cut(s) 149
BseDI CCNNGG 2 cut(s) 147, 282
BseGI GGATG 1 cut(s) 32
BseMII CTCAG 3 cut(s) 197, 230, 273
BseNI ACTGG 1 cut(s) 112
BseRI GAGGAG 1 cut(s) 347
BshFI GGCC 2 cut(s) 272, 344
BshNI GGYRCC 1 cut(s) 206
BsiHKCI CYCGRG 1 cut(s) 37
BsiSI CCGG 2 cut(s) 58, 99
BsmAI GTCTC 2 cut(s) 100, 181
BsmBI CGTCTC 1 cut(s) 100
BsnI GGCC 2 cut(s) 272, 344
BsoBI CYCGRG 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 148
Bsp13I TCCGGA 1 cut(s) 98
BspANI GGCC 2 cut(s) 272, 344
BspCNI CTCAG 3 cut(s) 196, 229, 272
BspEI TCCGGA 1 cut(s) 98
BspLI GGNNCC 2 cut(s) 145, 208
BspT107I GGYRCC 1 cut(s) 206
BsrFI RCCGGY 1 cut(s) 57
BsrI ACTGG 1 cut(s) 112
BssAI RCCGGY 1 cut(s) 57
BssECI CCNNGG 2 cut(s) 147, 282
BssT1I CCWWGG 1 cut(s) 282
Bst2UI CCWGG 1 cut(s) 149
Bst4CI ACNGT 1 cut(s) 321
Bst6I CTCTTC 2 cut(s) 114, 152
BstDEI CTNAG 3 cut(s) 183, 216, 259
BstF5I GGATG 1 cut(s) 32
BstMAI GTCTC 2 cut(s) 100, 181
BstNI CCWGG 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 147
BstXI CCANNNNNNTGG 1 cut(s) 352
BsuI GTATCC 1 cut(s) 156
BsuRI GGCC 2 cut(s) 272, 344
BtgZI GCGATG 1 cut(s) 167
BtsCI GGATG 1 cut(s) 32
Cfr10I RCCGGY 1 cut(s) 57
Csp6I GTAC 2 cut(s) 111, 207
CviJI RGCY 6 cut(s) 146, 214, 233, 272, 296, 344
CviKI_1 RGCY 6 cut(s) 146, 214, 233, 272, 296, 344
CviQI GTAC 2 cut(s) 111, 207
DdeI CTNAG 3 cut(s) 183, 216, 259
Eam1104I CTCTTC 2 cut(s) 114, 152
EarI CTCTTC 2 cut(s) 114, 152
Eco130I CCWWGG 1 cut(s) 282
Eco147I AGGCCT 1 cut(s) 272
Eco24I GRGCYC 1 cut(s) 148
Eco88I CYCGRG 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 147
EcoT14I CCWWGG 1 cut(s) 282
EcoT38I GRGCYC 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 282
Esp3I CGTCTC 1 cut(s) 100
FaiI YATR 2 cut(s) 17, 350
FokI GGATG 1 cut(s) 19
FriOI GRGCYC 1 cut(s) 148
HaeIII GGCC 2 cut(s) 272, 344
HapII CCGG 2 cut(s) 58, 99
HindIII AAGCTT 1 cut(s) 294
HinfI GANTC 3 cut(s) 67, 220, 239
HpaII CCGG 2 cut(s) 58, 99
HphI GGTGA 1 cut(s) 248
Hpy188I TCNGA 4 cut(s) 186, 219, 301, 368
Hpy188III TCNNGA 1 cut(s) 99
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 1 cut(s) 210
HpyCH4III ACNGT 1 cut(s) 321
HpyF3I CTNAG 3 cut(s) 183, 216, 259
Kpn2I TCCGGA 1 cut(s) 98
KpnI GGTACC 1 cut(s) 210
LmnI GCTCC 1 cut(s) 143
LpnPI CCDG 8 cut(s) 71, 93, 112, 134, 161, 189, 219, 246
LweI GCATC 1 cut(s) 180
MboII GAAGA 6 cut(s) 76, 131, 169, 234, 247, 355
MhlI GDGCHC 1 cut(s) 148
MlyI GAGTC 1 cut(s) 214
MnlI CCTC 9 cut(s) 95, 153, 177, 192, 225, 281, 283, 325, 334
MroI TCCGGA 1 cut(s) 98
MroXI GAANNNNTTC 1 cut(s) 295
MspI CCGG 2 cut(s) 58, 99
MspR9I CCNGG 1 cut(s) 149
MvaI CCWGG 1 cut(s) 149
NlaIV GGNNCC 2 cut(s) 145, 208
PceI AGGCCT 1 cut(s) 272
PdmI GAANNNNTTC 1 cut(s) 295
PfeI GAWTC 2 cut(s) 67, 239
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
Psp6I CCWGG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 147
PspN4I GGNNCC 2 cut(s) 145, 208
RsaI GTAC 2 cut(s) 112, 208
RsaNI GTAC 2 cut(s) 111, 207
SchI GAGTC 1 cut(s) 214
ScrFI CCNGG 1 cut(s) 149
SduI GDGCHC 1 cut(s) 148
SetI ASST 7 cut(s) 14, 169, 202, 229, 265, 284, 298
SfaNI GCATC 1 cut(s) 180
SgrAI CRCCGGYG 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 222
SmoI CTYRAG 1 cut(s) 222
SseBI AGGCCT 1 cut(s) 272
StuI AGGCCT 1 cut(s) 272
StyD4I CCNGG 1 cut(s) 147
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 1 cut(s) 321
TfiI GAWTC 2 cut(s) 67, 239
TspDTI ATGAA 1 cut(s) 170
XmnI GAANNNNTTC 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.