Rh7AG145400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Reverse (-)
11661965 .. 11666014
4050 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG145400.1

Sequence Viewer

Length: 378 bp
ATGATAGTTGTTCTGCATTGTCAAACTGCTCAGGACAGACAGACAGACAAACATCGGAAGCTTTCTTTCTTTGTTGTATTCGTCGTCGTCGTCGTCTCCGGCAGAAGAGAAGAGAGAGAGAGAGAGATGGGTGGAGCCCAGTTGATGAAGCGAATCCCTCGCATCAAATTTCCTCAGAGACATCCAAAGCCCGCTGGTTCTGAATCCCAGACAGCAGCACCTTTGGCTGGAGATTCTGTTCAAGCTTTCTTCTCAAGTTCAAAGGCTTCAACAACTTTGGGAGGAAAAGCTTCTGAACAACCCCCACGAACACCAGTATCCAAAGAAGAGATTGAGGCTATTTTGGTATATAGAACTTTTCACCTTGTATTGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.97

Weight (kDa)

10.09

Isoelectric Point (pI)

52.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 192
AcsI RAATTY 1 cut(s) 167
AfiI CCNNNNNNNGG 1 cut(s) 227
AgsI TTSAA 3 cut(s) 242, 261, 270
AloI GAACNNNNNNTCC 2 cut(s) 222, 254
AluBI AGCT 3 cut(s) 61, 245, 290
AluI AGCT 3 cut(s) 61, 245, 290
Alw26I GTCTC 2 cut(s) 100, 172
ApeKI GCWGC 1 cut(s) 215
ApoI RAATTY 1 cut(s) 167
Asp700I GAANNNNTTC 1 cut(s) 289
AsuHPI GGTGA 1 cut(s) 353
BaeI ACNNNNGTAYC 2 cut(s) 300, 333
BanII GRGCYC 1 cut(s) 139
BbvI GCAGC 1 cut(s) 227
BccI CCATC 1 cut(s) 121
BciVI GTATCC 1 cut(s) 328
BcoDI GTCTC 2 cut(s) 100, 172
BfuI GTATCC 1 cut(s) 328
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
BmiI GGNNCC 1 cut(s) 136
BmrI ACTGGG 1 cut(s) 133
BmsI GCATC 1 cut(s) 171
BmuI ACTGGG 1 cut(s) 133
BpmI CTGGAG 1 cut(s) 249
Bpu10I CCTNAGC 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 238
BsaXI ACNNNNNCTCC 2 cut(s) 222, 252
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse1I ACTGG 2 cut(s) 139, 314
BseGI GGATG 1 cut(s) 181
BseLI CCNNNNNNNGG 1 cut(s) 227
BseMII CTCAG 2 cut(s) 44, 188
BseNI ACTGG 2 cut(s) 139, 314
BseXI GCAGC 1 cut(s) 227
BsiSI CCGG 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 227
BsmAI GTCTC 2 cut(s) 100, 172
BsmBI CGTCTC 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 139
BspACI CCGC 1 cut(s) 192
BspCNI CTCAG 2 cut(s) 43, 187
BspLI GGNNCC 1 cut(s) 136
BsrI ACTGG 2 cut(s) 139, 314
Bst6I CTCTTC 3 cut(s) 100, 105, 321
BstC8I GCNNGC 1 cut(s) 192
BstDEI CTNAG 2 cut(s) 30, 174
BstF5I GGATG 1 cut(s) 181
BstMAI GTCTC 2 cut(s) 100, 172
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstV1I GCAGC 1 cut(s) 227
BsuI GTATCC 1 cut(s) 328
BtsCI GGATG 1 cut(s) 181
Cac8I GCNNGC 1 cut(s) 192
CviJI RGCY 8 cut(s) 61, 137, 190, 227, 245, 266, 290, 338
CviKI_1 RGCY 8 cut(s) 61, 137, 190, 227, 245, 266, 290, 338
DdeI CTNAG 2 cut(s) 30, 174
Eam1104I CTCTTC 3 cut(s) 100, 105, 321
EarI CTCTTC 3 cut(s) 100, 105, 321
Eco24I GRGCYC 1 cut(s) 139
EcoT38I GRGCYC 1 cut(s) 139
Esp3I CGTCTC 1 cut(s) 100
FaiI YATR 2 cut(s) 349, 351
FauI CCCGC 1 cut(s) 199
Fnu4HI GCNGC 1 cut(s) 216
FokI GGATG 1 cut(s) 168
FriOI GRGCYC 1 cut(s) 139
Fsp4HI GCNGC 1 cut(s) 216
GluI GCNGC 1 cut(s) 216
GsuI CTGGAG 1 cut(s) 249
HapII CCGG 1 cut(s) 99
HindIII AAGCTT 3 cut(s) 59, 243, 288
HinfI GANTC 3 cut(s) 153, 203, 233
HpaII CCGG 1 cut(s) 99
HphI GGTGA 1 cut(s) 353
Hpy188I TCNGA 4 cut(s) 57, 177, 202, 295
Hpy188III TCNNGA 1 cut(s) 32
Hpy99I CGWCG 4 cut(s) 86, 89, 92, 95
HpyCH4V TGCA 2 cut(s) 16, 373
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 2 cut(s) 30, 174
LmnI GCTCC 1 cut(s) 134
LpnPI CCDG 7 cut(s) 17, 112, 152, 180, 213, 221, 327
Lsp1109I GCAGC 1 cut(s) 227
LweI GCATC 1 cut(s) 171
MboII GAAGA 4 cut(s) 117, 122, 241, 338
MhlI GDGCHC 1 cut(s) 139
MluCI AATT 1 cut(s) 167
MnlI CCTC 4 cut(s) 168, 183, 275, 328
MroXI GAANNNNTTC 1 cut(s) 289
MspA1I CMGCKG 1 cut(s) 194
MspI CCGG 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 224
NlaIV GGNNCC 1 cut(s) 136
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 90
PdmI GAANNNNTTC 1 cut(s) 289
PfeI GAWTC 3 cut(s) 153, 203, 233
PkrI GCNGC 1 cut(s) 217
PspN4I GGNNCC 1 cut(s) 136
SatI GCNGC 1 cut(s) 216
SduI GDGCHC 1 cut(s) 139
SetI ASST 5 cut(s) 63, 223, 247, 292, 366
SfaNI GCATC 1 cut(s) 171
SmlI CTYRAG 1 cut(s) 253
SmoI CTYRAG 1 cut(s) 253
Sse9I AATT 1 cut(s) 167
SsiI CCGC 1 cut(s) 192
TasI AATT 1 cut(s) 167
TfiI GAWTC 3 cut(s) 153, 203, 233
TseI GCWGC 1 cut(s) 215
TspDTI ATGAA 1 cut(s) 161
XapI RAATTY 1 cut(s) 167
XmnI GAANNNNTTC 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.