Prokaryotic RING finger family 4
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G24204 AT4G24204 AT4G24204 |
| fragaria_vesca | FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_2g33452 FvH4_2g33452 FvH4_2g33452 |
| malus_domestica | MD08G1089900.v1.1 MD15G1074300.v1.1 MD15G1291000.v1.1 |
| prunus_persica | Prupe.1G427200_v2.0.a1 Prupe.6G226000_v2.0.a1 |
| pyrus_communis | pycom02g14610 pycom08g07330 pycom15g06950 pycom15g25460 |
| rosa_chinensis | RchiOBHm_Chr2g0107111 RchiOBHm_Chr6g0309061 |
| rosa_laevigata | RLG00000010593 RLG00000017555 |
| rosa_multiflora | Rmu_sc0002945.1_g000008 |
| rosa_roxburghii | Rroxscaffold_2G00136600 |
| rosa_rugosa | Rorug02G0140300 Rorug06G0369400 |
| rosa_samantha | Rh2AG191200 Rh2BG202900 Rh2CG196200 Rh2DG198400 Rh6AG482100 Rh6BG490900 Rh6CG496000 Rh6DG482600 |
| rosa_wichuraiana | Rw2G015100 Rw6G041970 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 102 |
| AccII | CGCG | 1 cut(s) | 273 |
| AciI | CCGC | 2 cut(s) | 110, 273 |
| AclWI | GGATC | 1 cut(s) | 296 |
| AcsI | RAATTY | 1 cut(s) | 26 |
| AcyI | GRCGYC | 2 cut(s) | 107, 164 |
| AdeI | CACNNNGTG | 1 cut(s) | 206 |
| AfaI | GTAC | 1 cut(s) | 246 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 102 |
| AgsI | TTSAA | 2 cut(s) | 25, 361 |
| AluBI | AGCT | 2 cut(s) | 174, 367 |
| AluI | AGCT | 2 cut(s) | 174, 367 |
| Alw21I | GWGCWC | 1 cut(s) | 283 |
| AlwI | GGATC | 1 cut(s) | 296 |
| ApoI | RAATTY | 1 cut(s) | 26 |
| AsuHPI | GGTGA | 2 cut(s) | 85, 343 |
| Bbv12I | GWGCWC | 1 cut(s) | 283 |
| BceAI | ACGGC | 2 cut(s) | 97, 177 |
| BclI | TGATCA | 1 cut(s) | 117 |
| BisI | GCNGC | 2 cut(s) | 110, 274 |
| BlsI | GCNGC | 2 cut(s) | 111, 275 |
| Bpu10I | CCTNAGC | 1 cut(s) | 32 |
| BsaHI | GRCGYC | 2 cut(s) | 107, 164 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 102 |
| BseGI | GGATG | 2 cut(s) | 58, 187 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 102 |
| BseMII | CTCAG | 1 cut(s) | 23 |
| Bsh1236I | CGCG | 1 cut(s) | 273 |
| BsiHKAI | GWGCWC | 1 cut(s) | 283 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 102 |
| Bsp1286I | GDGCHC | 1 cut(s) | 283 |
| Bsp143I | GATC | 2 cut(s) | 117, 288 |
| BspACI | CCGC | 2 cut(s) | 110, 273 |
| BspCNI | CTCAG | 1 cut(s) | 24 |
| BspFNI | CGCG | 1 cut(s) | 273 |
| BspPI | GGATC | 1 cut(s) | 296 |
| BssMI | GATC | 2 cut(s) | 117, 288 |
| BssNI | GRCGYC | 2 cut(s) | 107, 164 |
| Bst4CI | ACNGT | 3 cut(s) | 204, 236, 249 |
| BstACI | GRCGYC | 2 cut(s) | 107, 164 |
| BstDEI | CTNAG | 1 cut(s) | 32 |
| BstF5I | GGATG | 2 cut(s) | 58, 187 |
| BstFNI | CGCG | 1 cut(s) | 273 |
| BstKTI | GATC | 2 cut(s) | 120, 291 |
| BstMBI | GATC | 2 cut(s) | 117, 288 |
| BstUI | CGCG | 1 cut(s) | 273 |
| BstX2I | RGATCY | 1 cut(s) | 288 |
| BstYI | RGATCY | 1 cut(s) | 288 |
| BtsCI | GGATG | 2 cut(s) | 58, 187 |
| BtsIMutI | CAGTG | 1 cut(s) | 200 |
| CseI | GACGC | 2 cut(s) | 115, 153 |
| Csp6I | GTAC | 1 cut(s) | 245 |
| CviAII | CATG | 1 cut(s) | 46 |
| CviJI | RGCY | 4 cut(s) | 67, 174, 276, 367 |
| CviKI_1 | RGCY | 4 cut(s) | 67, 174, 276, 367 |
| CviQI | GTAC | 1 cut(s) | 245 |
| DdeI | CTNAG | 1 cut(s) | 32 |
| DpnI | GATC | 2 cut(s) | 119, 290 |
| DpnII | GATC | 2 cut(s) | 117, 288 |
| DraIII | CACNNNGTG | 1 cut(s) | 206 |
| FaeI | CATG | 1 cut(s) | 49 |
| FaiI | YATR | 3 cut(s) | 47, 212, 214 |
| FatI | CATG | 1 cut(s) | 45 |
| FbaI | TGATCA | 1 cut(s) | 117 |
| Fnu4HI | GCNGC | 2 cut(s) | 110, 274 |
| FokI | GGATG | 2 cut(s) | 65, 194 |
| Fsp4HI | GCNGC | 2 cut(s) | 110, 274 |
| GluI | GCNGC | 2 cut(s) | 110, 274 |
| HgaI | GACGC | 2 cut(s) | 115, 153 |
| Hin1I | GRCGYC | 2 cut(s) | 107, 164 |
| Hin1II | CATG | 1 cut(s) | 49 |
| HindIII | AAGCTT | 1 cut(s) | 365 |
| HinfI | GANTC | 1 cut(s) | 125 |
| HphI | GGTGA | 2 cut(s) | 85, 343 |
| Hpy166II | GTNNAC | 1 cut(s) | 190 |
| Hpy188I | TCNGA | 3 cut(s) | 181, 298, 318 |
| Hpy188III | TCNNGA | 1 cut(s) | 31 |
| Hpy8I | GTNNAC | 1 cut(s) | 190 |
| Hpy99I | CGWCG | 2 cut(s) | 169, 181 |
| HpyAV | CCTTC | 2 cut(s) | 139, 321 |
| HpyCH4III | ACNGT | 3 cut(s) | 204, 236, 249 |
| HpyCH4IV | ACGT | 1 cut(s) | 226 |
| HpyF3I | CTNAG | 1 cut(s) | 32 |
| HpySE526I | ACGT | 1 cut(s) | 226 |
| Hsp92I | GRCGYC | 2 cut(s) | 107, 164 |
| Hsp92II | CATG | 1 cut(s) | 49 |
| Ksp22I | TGATCA | 1 cut(s) | 117 |
| Kzo9I | GATC | 2 cut(s) | 117, 288 |
| LpnPI | CCDG | 1 cut(s) | 44 |
| MaeII | ACGT | 1 cut(s) | 226 |
| MaeIII | GTNAC | 4 cut(s) | 41, 91, 136, 254 |
| MalI | GATC | 2 cut(s) | 119, 290 |
| MboI | GATC | 2 cut(s) | 117, 288 |
| MboII | GAAGA | 3 cut(s) | 95, 98, 311 |
| MflI | RGATCY | 1 cut(s) | 288 |
| MhlI | GDGCHC | 1 cut(s) | 283 |
| MluCI | AATT | 1 cut(s) | 26 |
| MlyI | GAGTC | 1 cut(s) | 134 |
| MmeI | TCCRAC | 3 cut(s) | 111, 159, 276 |
| MnlI | CCTC | 4 cut(s) | 43, 57, 127, 214 |
| MvnI | CGCG | 1 cut(s) | 273 |
| NdeII | GATC | 2 cut(s) | 117, 288 |
| NlaIII | CATG | 1 cut(s) | 49 |
| NmuCI | GTSAC | 3 cut(s) | 41, 91, 254 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 173 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 102 |
| PkrI | GCNGC | 2 cut(s) | 111, 275 |
| PleI | GAGTC | 1 cut(s) | 133 |
| PpsI | GAGTC | 1 cut(s) | 133 |
| PsuI | RGATCY | 1 cut(s) | 288 |
| RsaI | GTAC | 1 cut(s) | 246 |
| RsaNI | GTAC | 1 cut(s) | 245 |
| SatI | GCNGC | 2 cut(s) | 110, 274 |
| Sau3AI | GATC | 2 cut(s) | 117, 288 |
| SchI | GAGTC | 1 cut(s) | 134 |
| SduI | GDGCHC | 1 cut(s) | 283 |
| SetI | ASST | 5 cut(s) | 138, 176, 229, 312, 369 |
| Sse9I | AATT | 1 cut(s) | 26 |
| SsiI | CCGC | 2 cut(s) | 110, 273 |
| TaaI | ACNGT | 3 cut(s) | 204, 236, 249 |
| TaiI | ACGT | 1 cut(s) | 229 |
| TaqI | TCGA | 2 cut(s) | 197, 219 |
| TasI | AATT | 1 cut(s) | 26 |
| TauI | GCSGC | 2 cut(s) | 112, 276 |
| TscAI | CASTG | 1 cut(s) | 207 |
| TseFI | GTSAC | 3 cut(s) | 41, 91, 254 |
| Tsp45I | GTSAC | 3 cut(s) | 41, 91, 254 |
| TspRI | CASTG | 1 cut(s) | 207 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 102 |
| XapI | RAATTY | 1 cut(s) | 26 |