Rh6CG496000

Domain of unknown function (DUF4793)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0002655
Physical Location & Seq
Forward (+)
66174067 .. 66175903
1837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG496000.1

Sequence Viewer

Length: 1170 bp
ATGTATCGACCTACGTGGGCGCATTCGACTCCGGTTGGCCCTCAGCGGTGGCAAGAGACTTGGGCTCGCCTACTTACTCCTTTCACCCTTTGGATATGTGTTTCGGTGAGCATTCGATATGGTTATTATGGAGACAACCGTATGGAGCTTGGCCCAAGCTCCTCGCGCTTGATGAGGGCTAGTTCTGTTTTTGTACAACAAGTTGTAGTGAGAGATGTTGATAAGAAAGGGGTTTCTCTCTATGCTTTTTCTGAAGAGCCTAAGTTGAGCCACCAAGCTAATTGGAGTGTGTCTAACTACTTGATTATTAAGACCTATAGTCGCAAGGGATTTTCTTTCTGGTTAAACAAGGGTTCAAGGATATCCATGAGATTGGAAGCTCACCCTACTCATGTAAATCAACTCCAAGTTGTCATGCTTAAAGGGGAACGGAAATTCGAAATACTGCAGCCGAAACAAACAAGTTCTGTGAATGCCTTTAATGAATCCAAAATTGGTAAAGAAGCTGAATATAGCATTGAGGAAGATGACAGGTACTACCTTGACATCATAAACACAAATCCTAAAAGCATAATCATACAGATGAATGTAAATGTTTCGTCGAAGATGCATGATACTACGAATGCTAAGGCCATCTGCTCGACAGAAAATAAGGCTTCTTCGTGCCAGCTCAGGCTTATATTCCCCAATACTCATTATGTCATACTGACCACACCTAACAATGGGGATCTTCTTGGATGGTACATCGAGCTTTCTTTTGTGGCTCGTGTGATAACATATATTGGAATTTTAGGGTTTATAGTGGTCATGATCTTTCTAATATTGAAATACCTTGGCGCCTGTGATGCTGAGAGTAGTACTGTAGTAGAAGACACAAGACAAGAAATTAATGAGACTTACCCTATAGTGCCACGCAAGACAGTTCCACAAACATATGGTACAAATGAAGAAGATGATGATTCAGGAGCTTCGAGTAGCTCCTCAGAGGAATTATATGATGAGAAGCTATGCGTGATTTGTTATGATGAGCAGCGGAACTGCTTCTTCGTTCCTTGTGGTCACTGTGCTACCTGCTATGACTGTGCTCAGAGGATCATGGATGGGGAGAGTAAGGTGTGTCCAATTTGTAGAAGGCTCATTAATAAAGTGAGAAGATTGTTTAACTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4792 DUF4793 zf-C3HC4_3

Protein Analysis

389

Amino Acids

44.47

Weight (kDa)

7.48

Isoelectric Point (pI)

45.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
APD1-4_N PF16040 78 - 146 2.9e-16 E3 ubiquitin-protein ligase APD1-4, N-terminal
APD1-4_M PF16041 169 - 273 5.5e-24 E3 ubiquitin-protein ligase APD1-4, middle domain
zf-C3HC4_3 PF13920 334 - 383 2e-15 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 336 - 377 1.6e-06 Ring finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1079
AccB1I GGYRCC 1 cut(s) 836
AccII CGCG 1 cut(s) 166
AciI CCGC 2 cut(s) 46, 1033
AclWI GGATC 2 cut(s) 735, 1100
AcsI RAATTY 2 cut(s) 434, 786
AcuI CTGAAG 1 cut(s) 273
AcyI GRCGYC 1 cut(s) 837
AfaI GTAC 5 cut(s) 195, 536, 743, 859, 940
AfiI CCNNNNNNNGG 1 cut(s) 722
AgsI TTSAA 2 cut(s) 357, 826
AhdI GACNNNNNGTC 1 cut(s) 318
AjuI GAANNNNNNNTTGG 2 cut(s) 477, 509
Alw21I GWGCWC 1 cut(s) 1087
Alw26I GTCTC 3 cut(s) 50, 126, 887
AlwI GGATC 2 cut(s) 735, 1100
AoxI GGCC 3 cut(s) 37, 151, 630
ApeKI GCWGC 2 cut(s) 448, 1030
ApoI RAATTY 2 cut(s) 434, 786
AseI ATTAAT 2 cut(s) 888, 1140
Asp700I GAANNNNTTC 1 cut(s) 1040
AspLEI GCGC 3 cut(s) 22, 168, 839
AspS9I GGNCC 2 cut(s) 38, 152
AsuHPI GGTGA 3 cut(s) 76, 118, 374
AsuII TTCGAA 1 cut(s) 438
BanI GGYRCC 1 cut(s) 836
BanII GRGCYC 1 cut(s) 67
BauI CACGAG 1 cut(s) 765
BbsI GAAGAC 1 cut(s) 876
Bbv12I GWGCWC 1 cut(s) 1087
BbvCI CCTCAGC 1 cut(s) 42
BbvI GCAGC 2 cut(s) 460, 1042
BccI CCATC 3 cut(s) 641, 732, 1094
BcoDI GTCTC 3 cut(s) 50, 126, 887
BfaI CTAG 1 cut(s) 180
BfmI CTRYAG 4 cut(s) 316, 446, 861, 903
BfoI RGCGCY 1 cut(s) 840
BfuAI ACCTGC 1 cut(s) 1079
BisI GCNGC 2 cut(s) 449, 1031
BlsI GCNGC 2 cut(s) 450, 1032
BmcAI AGTACT 1 cut(s) 859
BmeRI GACNNNNNGTC 1 cut(s) 318
BmgT120I GGNCC 2 cut(s) 38, 152
BmiI GGNNCC 1 cut(s) 838
BmsI GCATC 2 cut(s) 597, 835
BpiI GAAGAC 1 cut(s) 876
Bpu10I CCTNAGC 3 cut(s) 42, 627, 671
Bpu14I TTCGAA 1 cut(s) 438
BsaAI YACGTR 1 cut(s) 15
BsaHI GRCGYC 1 cut(s) 837
BsaJI CCNNGG 1 cut(s) 832
BsaWI WCCGGW 1 cut(s) 31
Bsc4I CCNNNNNNNGG 1 cut(s) 722
BseDI CCNNGG 1 cut(s) 832
BseGI GGATG 2 cut(s) 743, 1105
BseLI CCNNNNNNNGG 1 cut(s) 722
BseMII CTCAG 5 cut(s) 56, 685, 840, 996, 1100
BseRI GAGGAG 2 cut(s) 151, 970
BseXI GCAGC 2 cut(s) 460, 1042
Bsh1236I CGCG 1 cut(s) 166
BshFI GGCC 3 cut(s) 39, 153, 632
BshNI GGYRCC 1 cut(s) 836
BsiHKAI GWGCWC 1 cut(s) 1087
BsiSI CCGG 1 cut(s) 32
BslI CCNNNNNNNGG 1 cut(s) 722
BsmAI GTCTC 3 cut(s) 50, 126, 887
BsmI GAATGC 4 cut(s) 22, 111, 478, 628
BsnI GGCC 3 cut(s) 39, 153, 632
Bsp119I TTCGAA 1 cut(s) 438
Bsp1286I GDGCHC 2 cut(s) 67, 1087
Bsp1407I TGTACA 1 cut(s) 193
Bsp143I GATC 3 cut(s) 727, 810, 1092
BspACI CCGC 2 cut(s) 46, 1033
BspANI GGCC 3 cut(s) 39, 153, 632
BspCNI CTCAG 5 cut(s) 55, 684, 841, 995, 1099
BspFNI CGCG 1 cut(s) 166
BspHI TCATGA 1 cut(s) 807
BspLI GGNNCC 1 cut(s) 838
BspMAI CTGCAG 1 cut(s) 450
BspMI ACCTGC 1 cut(s) 1079
BspPI GGATC 2 cut(s) 735, 1100
BspQI GCTCTTC 1 cut(s) 249
BspT104I TTCGAA 1 cut(s) 438
BspT107I GGYRCC 1 cut(s) 836
BsrGI TGTACA 1 cut(s) 193
BssECI CCNNGG 1 cut(s) 832
BssMI GATC 3 cut(s) 727, 810, 1092
BssNI GRCGYC 1 cut(s) 837
BssSI CACGAG 1 cut(s) 765
BssT1I CCWWGG 1 cut(s) 832
Bst2BI CACGAG 1 cut(s) 765
Bst4CI ACNGT 5 cut(s) 140, 862, 922, 1064, 1082
Bst6I CTCTTC 1 cut(s) 249
BstACI GRCGYC 1 cut(s) 837
BstAUI TGTACA 1 cut(s) 193
BstBAI YACGTR 1 cut(s) 15
BstBI TTCGAA 1 cut(s) 438
BstC8I GCNNGC 2 cut(s) 67, 668
BstDEI CTNAG 7 cut(s) 42, 261, 627, 671, 849, 982, 1086
BstF5I GGATG 2 cut(s) 743, 1105
BstFNI CGCG 1 cut(s) 166
BstH2I RGCGCY 1 cut(s) 840
BstHHI GCGC 3 cut(s) 22, 168, 839
BstKTI GATC 3 cut(s) 730, 813, 1095
BstMAI GTCTC 3 cut(s) 50, 126, 887
BstMBI GATC 3 cut(s) 727, 810, 1092
BstMWI GCNNNNNNNGC 2 cut(s) 165, 845
BstSFI CTRYAG 4 cut(s) 316, 446, 861, 903
BstUI CGCG 1 cut(s) 166
BstV1I GCAGC 2 cut(s) 460, 1042
BstV2I GAAGAC 1 cut(s) 876
BstX2I RGATCY 1 cut(s) 727
BstXI CCANNNNNNTGG 1 cut(s) 373
BstYI RGATCY 1 cut(s) 727
BsuRI GGCC 3 cut(s) 39, 153, 632
BtsCI GGATG 2 cut(s) 743, 1105
BtsIMutI CAGTG 1 cut(s) 1060
BveI ACCTGC 1 cut(s) 1079
Cac8I GCNNGC 2 cut(s) 67, 668
CciI TCATGA 1 cut(s) 807
CfoI GCGC 3 cut(s) 22, 168, 839
Cfr13I GGNCC 2 cut(s) 38, 152
Csp6I GTAC 5 cut(s) 194, 535, 742, 858, 939
CviAII CATG 6 cut(s) 367, 392, 415, 611, 808, 1096
CviQI GTAC 5 cut(s) 194, 535, 742, 858, 939
DdeI CTNAG 7 cut(s) 42, 261, 627, 671, 849, 982, 1086
DinI GGCGCC 1 cut(s) 838
DpnI GATC 3 cut(s) 729, 812, 1094
DpnII GATC 3 cut(s) 727, 810, 1092
DriI GACNNNNNGTC 1 cut(s) 318
Eam1104I CTCTTC 1 cut(s) 249
Eam1105I GACNNNNNGTC 1 cut(s) 318
EarI CTCTTC 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 832
Eco24I GRGCYC 1 cut(s) 67
Eco32I GATATC 1 cut(s) 363
Eco57I CTGAAG 1 cut(s) 273
EcoRV GATATC 1 cut(s) 363
EcoT14I CCWWGG 1 cut(s) 832
EcoT22I ATGCAT 1 cut(s) 612
EcoT38I GRGCYC 1 cut(s) 67
EgeI GGCGCC 1 cut(s) 838
EheI GGCGCC 1 cut(s) 838
ErhI CCWWGG 1 cut(s) 832
FaeI CATG 6 cut(s) 370, 395, 418, 614, 811, 1099
FatI CATG 6 cut(s) 366, 391, 414, 610, 807, 1095
FauNDI CATATG 1 cut(s) 934
Fnu4HI GCNGC 2 cut(s) 449, 1031
FokI GGATG 2 cut(s) 750, 1112
FriOI GRGCYC 1 cut(s) 67
Fsp4HI GCNGC 2 cut(s) 449, 1031
FspBI CTAG 1 cut(s) 180
GlaI GCGC 3 cut(s) 21, 167, 838
GluI GCNGC 2 cut(s) 449, 1031
HaeII RGCGCY 1 cut(s) 840
HaeIII GGCC 3 cut(s) 39, 153, 632
HapII CCGG 1 cut(s) 32
HhaI GCGC 3 cut(s) 22, 168, 839
Hin1I GRCGYC 1 cut(s) 837
Hin1II CATG 6 cut(s) 370, 395, 418, 614, 811, 1099
Hin6I GCGC 3 cut(s) 20, 166, 837
HinP1I GCGC 3 cut(s) 20, 166, 837
HinfI GANTC 3 cut(s) 28, 485, 959
HpaII CCGG 1 cut(s) 32
HphI GGTGA 3 cut(s) 76, 118, 374
Hpy188I TCNGA 3 cut(s) 253, 985, 1089
Hpy188III TCNNGA 2 cut(s) 808, 963
Hpy99I CGWCG 1 cut(s) 604
HpyAV CCTTC 1 cut(s) 1125
HpyCH4III ACNGT 5 cut(s) 140, 862, 922, 1064, 1082
HpyCH4IV ACGT 1 cut(s) 14
HpyCH4V TGCA 2 cut(s) 448, 610
HpyF10VI GCNNNNNNNGC 2 cut(s) 165, 845
HpyF3I CTNAG 7 cut(s) 42, 261, 627, 671, 849, 982, 1086
HpySE526I ACGT 1 cut(s) 14
Hsp92I GRCGYC 1 cut(s) 837
Hsp92II CATG 6 cut(s) 370, 395, 418, 614, 811, 1099
HspAI GCGC 3 cut(s) 20, 166, 837
KasI GGCGCC 1 cut(s) 836
Kzo9I GATC 3 cut(s) 727, 810, 1092
LguI GCTCTTC 1 cut(s) 249
LmnI GCTCC 4 cut(s) 145, 164, 965, 983
LpnPI CCDG 8 cut(s) 45, 325, 517, 658, 680, 853, 948, 1084
Lsp1109I GCAGC 2 cut(s) 460, 1042
LweI GCATC 2 cut(s) 597, 835
MaeI CTAG 1 cut(s) 180
MaeII ACGT 1 cut(s) 14
MaeIII GTNAC 1 cut(s) 1058
MalI GATC 3 cut(s) 729, 812, 1094
MboI GATC 3 cut(s) 727, 810, 1092
MflI RGATCY 1 cut(s) 727
MhlI GDGCHC 2 cut(s) 67, 1087
MluCI AATT 7 cut(s) 280, 434, 492, 786, 885, 989, 1122
Mly113I GGCGCC 1 cut(s) 837
MlyI GAGTC 1 cut(s) 22
MnlI CCTC 7 cut(s) 51, 168, 172, 514, 979, 991, 1083
Mph1103I ATGCAT 1 cut(s) 612
MroXI GAANNNNTTC 1 cut(s) 1040
MseI TTAA 8 cut(s) 309, 344, 420, 480, 888, 1140, 1161, 1168
MslI CAYNNNNRTG 1 cut(s) 581
MspA1I CMGCKG 2 cut(s) 46, 1033
MspI CCGG 1 cut(s) 32
Mva1269I GAATGC 4 cut(s) 22, 111, 478, 628
MvnI CGCG 1 cut(s) 166
MwoI GCNNNNNNNGC 2 cut(s) 165, 845
NarI GGCGCC 1 cut(s) 837
NdeI CATATG 1 cut(s) 934
NdeII GATC 3 cut(s) 727, 810, 1092
NlaIII CATG 6 cut(s) 370, 395, 418, 614, 811, 1099
NlaIV GGNNCC 1 cut(s) 838
NmuCI GTSAC 1 cut(s) 1058
NsiI ATGCAT 1 cut(s) 612
NspV TTCGAA 1 cut(s) 438
PagI TCATGA 1 cut(s) 807
PciSI GCTCTTC 1 cut(s) 249
PctI GAATGC 4 cut(s) 22, 111, 478, 628
PdmI GAANNNNTTC 1 cut(s) 1040
PfeI GAWTC 2 cut(s) 485, 959
PkrI GCNGC 2 cut(s) 450, 1032
PleI GAGTC 1 cut(s) 22
PluTI GGCGCC 1 cut(s) 840
PpsI GAGTC 1 cut(s) 22
Ppu21I YACGTR 1 cut(s) 15
PshBI ATTAAT 2 cut(s) 888, 1140
PspN4I GGNNCC 1 cut(s) 838
PspPI GGNCC 2 cut(s) 38, 152
PstI CTGCAG 1 cut(s) 450
PsuI RGATCY 1 cut(s) 727
RsaI GTAC 5 cut(s) 195, 536, 743, 859, 940
RsaNI GTAC 5 cut(s) 194, 535, 742, 858, 939
RseI CAYNNNNRTG 1 cut(s) 581
SapI GCTCTTC 1 cut(s) 249
SaqAI TTAA 8 cut(s) 309, 344, 420, 480, 888, 1140, 1161, 1168
SatI GCNGC 2 cut(s) 449, 1031
Sau3AI GATC 3 cut(s) 727, 810, 1092
Sau96I GGNCC 2 cut(s) 38, 152
ScaI AGTACT 1 cut(s) 859
SchI GAGTC 1 cut(s) 22
SduI GDGCHC 2 cut(s) 67, 1087
SfaNI GCATC 2 cut(s) 597, 835
SfcI CTRYAG 4 cut(s) 316, 446, 861, 903
SfoI GGCGCC 1 cut(s) 838
SfuI TTCGAA 1 cut(s) 438
SmiMI CAYNNNNRTG 1 cut(s) 581
Sse9I AATT 7 cut(s) 280, 434, 492, 786, 885, 989, 1122
SsiI CCGC 2 cut(s) 46, 1033
SspDI GGCGCC 1 cut(s) 836
SspI AATATT 1 cut(s) 822
SspMI CTAG 1 cut(s) 180
StyI CCWWGG 1 cut(s) 832
TaaI ACNGT 5 cut(s) 140, 862, 922, 1064, 1082
TaiI ACGT 1 cut(s) 17
TaqI TCGA 8 cut(s) 7, 26, 115, 438, 602, 641, 747, 971
TasI AATT 7 cut(s) 280, 434, 492, 786, 885, 989, 1122
TatI WGTACW 2 cut(s) 193, 857
TfiI GAWTC 2 cut(s) 485, 959
Tru1I TTAA 8 cut(s) 309, 344, 420, 480, 888, 1140, 1161, 1168
Tru9I TTAA 8 cut(s) 309, 344, 420, 480, 888, 1140, 1161, 1168
TscAI CASTG 1 cut(s) 1067
TseFI GTSAC 1 cut(s) 1058
TseI GCWGC 2 cut(s) 448, 1030
Tsp45I GTSAC 1 cut(s) 1058
TspDTI ATGAA 3 cut(s) 498, 599, 960
TspGWI ACGGA 1 cut(s) 445
TspRI CASTG 1 cut(s) 1067
VspI ATTAAT 2 cut(s) 888, 1140
XapI RAATTY 2 cut(s) 434, 786
XmnI GAANNNNTTC 1 cut(s) 1040
XspI CTAG 1 cut(s) 180
ZrmI AGTACT 1 cut(s) 859
Zsp2I ATGCAT 1 cut(s) 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.