Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002655

Physical Location & Seq

Genomic Coordinates Reverse (-)

23013739 .. 23015716

Gene Structure 1978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G226000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTGTTCCATAATAGATGGACTGAAGCACCGGAAGCTTCAATCGATCAACTCTCAATCATACAATTTAACGAGTACCACCTATAACGATGATCAGGTGGAATGGTGCGTTACGCTTACCTTTCTAGCCCGTTTGATTGCATATGTTGGAATTCTAACATTGCTTGTGATTGTTGCATACATGATATTGAAGTACATAAATGAGTACGATGGTGAGGAGGGCGGTATAGAGGATGTAAGAGAAAGTACTGAAACAAGCACGTTACAACCCGGAAAGACGATGCCAGTAACATACGGGACATGTGACGAGTGGGATATAGAATCCGGAAATTGCAGCAGCAGTAATAGTAGCAATGGCCCAATTACAAGCTCCTCTGAGGACTTGTATGATGGGAAAATATGTGTGATCTGCTACACTGAGCAAAGGGATTGTTTTTTGGTTCCTTGTGGACATTGTGCTACCTGCTACGTCTGTGCACAGAGGATTTTTTATGGGGACAGCAAAATATGTCCAATATGCCGAAGATCCATTCGCAAAGTTAGAAAGTTATTTGCAGCACAGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4792 DUF4793 zf-C3HC4_3

Protein Analysis

189

Amino Acids

21.06

Weight (kDa)

4.96

Isoelectric Point (pI)

50.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24204 AT4G24204 AT4G24204
fragaria_vesca	FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_2g33452 FvH4_2g33452 FvH4_2g33452
malus_domestica	MD08G1089900.v1.1 MD15G1074300.v1.1 MD15G1291000.v1.1
prunus_persica	Prupe.1G427200_v2.0.a1 Prupe.6G226000_v2.0.a1
pyrus_communis	pycom02g14610 pycom08g07330 pycom15g06950 pycom15g25460
rosa_chinensis	RchiOBHm_Chr2g0107111 RchiOBHm_Chr6g0309061
rosa_laevigata	RLG00000010593 RLG00000017555
rosa_multiflora	Rmu_sc0002945.1_g000008
rosa_roxburghii	Rroxscaffold_2G00136600
rosa_rugosa	Rorug02G0140300 Rorug06G0369400
rosa_samantha	Rh2AG191200 Rh2BG202900 Rh2CG196200 Rh2DG198400 Rh6AG482100 Rh6BG490900 Rh6CG496000 Rh6DG482600
rosa_wichuraiana	Rw2G015100 Rw6G041970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	470
AccIII	TCCGGA	1 cut(s)	323
AciI	CCGC	1 cut(s)	222
AclWI	GGATC	1 cut(s)	519
AcsI	RAATTY	1 cut(s)	150
AcuI	CTGAAG	1 cut(s)	44
AfaI	GTAC	4 cut(s)	76, 194, 206, 247
AflIII	ACRYGT	1 cut(s)	299
AgsI	TTSAA	2 cut(s)	41, 190
AluBI	AGCT	2 cut(s)	37, 369
AluI	AGCT	2 cut(s)	37, 369
Alw21I	GWGCWC	1 cut(s)	478
Alw44I	GTGCAC	1 cut(s)	474
AlwI	GGATC	1 cut(s)	519
Aor13HI	TCCGGA	1 cut(s)	323
AoxI	GGCC	1 cut(s)	355
ApaLI	GTGCAC	1 cut(s)	474
ApeKI	GCWGC	3 cut(s)	333, 336, 554
ApoI	RAATTY	1 cut(s)	150
AspS9I	GGNCC	1 cut(s)	356
AsuC2I	CCSGG	1 cut(s)	270
AsuHPI	GGTGA	1 cut(s)	224
BaeGI	GKGCMC	1 cut(s)	478
Bbv12I	GWGCWC	1 cut(s)	478
BbvI	GCAGC	2 cut(s)	345, 348
BccI	CCATC	3 cut(s)	11, 203, 383
BclI	TGATCA	1 cut(s)	91
BcnI	CCSGG	1 cut(s)	270
BfaI	CTAG	1 cut(s)	125
BfuAI	ACCTGC	1 cut(s)	470
BisI	GCNGC	3 cut(s)	334, 337, 555
BlsI	GCNGC	3 cut(s)	335, 338, 556
BmcAI	AGTACT	1 cut(s)	247
Bme1390I	CCNGG	1 cut(s)	270
BmgT120I	GGNCC	1 cut(s)	356
BmiI	GGNNCC	1 cut(s)	441
BmrFI	CCNGG	1 cut(s)	270
BmsI	GCATC	1 cut(s)	270
BpuMI	CCSGG	1 cut(s)	270
Bsa29I	ATCGAT	1 cut(s)	44
BsaWI	WCCGGW	2 cut(s)	30, 323
Bse1I	ACTGG	1 cut(s)	284
Bse3DI	GCAATG	2 cut(s)	158, 358
BseAI	TCCGGA	1 cut(s)	323
BseCI	ATCGAT	1 cut(s)	44
BseGI	GGATG	1 cut(s)	238
BseMI	GCAATG	2 cut(s)	158, 358
BseMII	CTCAG	2 cut(s)	366, 408
BseNI	ACTGG	1 cut(s)	284
BseRI	GAGGAG	2 cut(s)	230, 361
BseSI	GKGCMC	1 cut(s)	478
BseXI	GCAGC	2 cut(s)	345, 348
BshFI	GGCC	1 cut(s)	357
BshVI	ATCGAT	1 cut(s)	44
BsiHKAI	GWGCWC	1 cut(s)	478
BsiSI	CCGG	3 cut(s)	31, 270, 324
BslFI	GGGAC	2 cut(s)	310, 509
BsmFI	GGGAC	2 cut(s)	310, 509
BsnI	GGCC	1 cut(s)	357
Bsp1286I	GDGCHC	1 cut(s)	478
Bsp13I	TCCGGA	1 cut(s)	323
Bsp143I	GATC	4 cut(s)	45, 91, 405, 524
BspACI	CCGC	1 cut(s)	222
BspANI	GGCC	1 cut(s)	357
BspCNI	CTCAG	2 cut(s)	367, 409
BspDI	ATCGAT	1 cut(s)	44
BspEI	TCCGGA	1 cut(s)	323
BspLI	GGNNCC	1 cut(s)	441
BspMI	ACCTGC	1 cut(s)	470
BspPI	GGATC	1 cut(s)	519
BsrDI	GCAATG	2 cut(s)	158, 358
BsrI	ACTGG	1 cut(s)	284
BssMI	GATC	4 cut(s)	45, 91, 405, 524
BstDEI	CTNAG	2 cut(s)	375, 417
BstF5I	GGATG	1 cut(s)	238
BstKTI	GATC	4 cut(s)	48, 94, 408, 527
BstMBI	GATC	4 cut(s)	45, 91, 405, 524
BstMWI	GCNNNNNNNGC	1 cut(s)	34
BstNSI	RCATGY	1 cut(s)	303
BstSCI	CCNGG	1 cut(s)	268
BstSLI	GKGCMC	1 cut(s)	478
BstV1I	GCAGC	2 cut(s)	345, 348
BstX2I	RGATCY	1 cut(s)	524
BstYI	RGATCY	1 cut(s)	524
Bsu15I	ATCGAT	1 cut(s)	44
BsuRI	GGCC	1 cut(s)	357
BsuTUI	ATCGAT	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	414
BveI	ACCTGC	1 cut(s)	470
Cfr13I	GGNCC	1 cut(s)	356
ClaI	ATCGAT	1 cut(s)	44
Csp6I	GTAC	4 cut(s)	75, 193, 205, 246
CviAII	CATG	2 cut(s)	181, 300
CviJI	RGCY	4 cut(s)	37, 128, 357, 369
CviKI_1	RGCY	4 cut(s)	37, 128, 357, 369
CviQI	GTAC	4 cut(s)	75, 193, 205, 246
DdeI	CTNAG	2 cut(s)	375, 417
DpnI	GATC	4 cut(s)	47, 93, 407, 526
DpnII	GATC	4 cut(s)	45, 91, 405, 524
Eco57I	CTGAAG	1 cut(s)	44
EcoRI	GAATTC	1 cut(s)	150
FaeI	CATG	2 cut(s)	184, 303
FaqI	GGGAC	2 cut(s)	310, 509
FatI	CATG	2 cut(s)	180, 299
FauNDI	CATATG	1 cut(s)	142
FbaI	TGATCA	1 cut(s)	91
Fnu4HI	GCNGC	3 cut(s)	334, 337, 555
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	3 cut(s)	334, 337, 555
FspBI	CTAG	1 cut(s)	125
GluI	GCNGC	3 cut(s)	334, 337, 555
HaeIII	GGCC	1 cut(s)	357
HapII	CCGG	3 cut(s)	31, 270, 324
Hin1II	CATG	2 cut(s)	184, 303
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	1 cut(s)	320
HpaII	CCGG	3 cut(s)	31, 270, 324
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	2 cut(s)	449, 476
Hpy188I	TCNGA	1 cut(s)	376
Hpy188III	TCNNGA	1 cut(s)	324
Hpy8I	GTNNAC	2 cut(s)	449, 476
HpyCH4IV	ACGT	2 cut(s)	260, 468
HpyCH4V	TGCA	5 cut(s)	140, 176, 333, 476, 554
HpyF10VI	GCNNNNNNNGC	1 cut(s)	34
HpyF3I	CTNAG	2 cut(s)	375, 417
HpySE526I	ACGT	2 cut(s)	260, 468
Hsp92II	CATG	2 cut(s)	184, 303
Kpn2I	TCCGGA	1 cut(s)	323
Ksp22I	TGATCA	1 cut(s)	91
Kzo9I	GATC	4 cut(s)	45, 91, 405, 524
LmnI	GCTCC	1 cut(s)	374
LpnPI	CCDG	7 cut(s)	44, 80, 283, 297, 337, 475, 545
Lsp1109I	GCAGC	2 cut(s)	345, 348
LweI	GCATC	1 cut(s)	270
MaeI	CTAG	1 cut(s)	125
MaeII	ACGT	2 cut(s)	260, 468
MaeIII	GTNAC	4 cut(s)	109, 261, 286, 302
MalI	GATC	4 cut(s)	47, 93, 407, 526
MboI	GATC	4 cut(s)	45, 91, 405, 524
MboII	GAAGA	1 cut(s)	534
MflI	RGATCY	1 cut(s)	524
MhlI	GDGCHC	1 cut(s)	478
MluCI	AATT	4 cut(s)	64, 150, 328, 360
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	6 cut(s)	208, 211, 223, 370, 382, 474
MroI	TCCGGA	1 cut(s)	323
MseI	TTAA	1 cut(s)	68
MspI	CCGG	3 cut(s)	31, 270, 324
MspR9I	CCNGG	1 cut(s)	270
MwoI	GCNNNNNNNGC	1 cut(s)	34
NciI	CCSGG	1 cut(s)	270
NdeI	CATATG	1 cut(s)	142
NdeII	GATC	4 cut(s)	45, 91, 405, 524
NlaIII	CATG	2 cut(s)	184, 303
NlaIV	GGNNCC	1 cut(s)	441
NmuCI	GTSAC	1 cut(s)	302
NspI	RCATGY	1 cut(s)	303
PciI	ACATGT	1 cut(s)	299
PfeI	GAWTC	1 cut(s)	320
PkrI	GCNGC	3 cut(s)	335, 338, 556
PscI	ACATGT	1 cut(s)	299
PspN4I	GGNNCC	1 cut(s)	441
PspPI	GGNCC	1 cut(s)	356
PsuI	RGATCY	1 cut(s)	524
RsaI	GTAC	4 cut(s)	76, 194, 206, 247
RsaNI	GTAC	4 cut(s)	75, 193, 205, 246
SaqAI	TTAA	1 cut(s)	68
SatI	GCNGC	3 cut(s)	334, 337, 555
Sau3AI	GATC	4 cut(s)	45, 91, 405, 524
Sau96I	GGNCC	1 cut(s)	356
ScaI	AGTACT	1 cut(s)	247
ScrFI	CCNGG	1 cut(s)	270
SduI	GDGCHC	1 cut(s)	478
SetI	ASST	8 cut(s)	39, 83, 99, 122, 263, 371, 464, 471
SfaNI	GCATC	1 cut(s)	270
Sse9I	AATT	4 cut(s)	64, 150, 328, 360
SsiI	CCGC	1 cut(s)	222
SspMI	CTAG	1 cut(s)	125
StyD4I	CCNGG	1 cut(s)	268
TaiI	ACGT	2 cut(s)	263, 471
TaqI	TCGA	1 cut(s)	44
TasI	AATT	4 cut(s)	64, 150, 328, 360
TatI	WGTACW	2 cut(s)	192, 245
TfiI	GAWTC	1 cut(s)	320
Tru1I	TTAA	1 cut(s)	68
Tru9I	TTAA	1 cut(s)	68
TscAI	CASTG	1 cut(s)	421
TseFI	GTSAC	1 cut(s)	302
TseI	GCWGC	3 cut(s)	333, 336, 554
Tsp45I	GTSAC	1 cut(s)	302
TspRI	CASTG	1 cut(s)	421
VneI	GTGCAC	1 cut(s)	474
XapI	RAATTY	1 cut(s)	150
XceI	RCATGY	1 cut(s)	303
XspI	CTAG	1 cut(s)	125
ZrmI	AGTACT	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.