Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002655

Physical Location & Seq

Genomic Coordinates Forward (+)

19928954 .. 19929828

Gene Structure 875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g25460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGTGGTCTATACTAGATGGACTGACAATTCATCGGAAGCTTCAATCGATCAACTCTCAGCCTTCCAATTTAACAACGAGTATTACCTATGACGATGATTTGGTAGAATGGTGCGTCACGCTAACTTTTCTCGTGCGCTTGATTGCGTACATTGCAATTTTAACACTGCTTGTGATTGTTGCATTCATGATACTGAAATACATAAACGAATACGAGGAGACAAGCGTAGAGGATGTAGGAGACAGTGCTGAAACCGACCCATTACAGCCGGCAGGAAAGACAATGCCATCAACATATGGGACATGTGACGAGTGGGATATAGAATCAGGAAATTGCAGCAGCAGCAGTAGTAATAGCAGCAATGCCGTAATTACGAGCTCCTCCGAAGACTTGCATGACGGGAAGATATGTGTGATTTGCTACACCGAGCAGAGGGATTGTTTTTTGGTTCCTTGCGGCCACTGTGCTACCTGCTATGATTGTGCACAAAGGATTTTTTATGGGGAGACCAAGACATGTCCGATATGTCGAAGATTCATTCGGAAAGTAAGAAGATTATTTGCTGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4792 DUF4793 zf-C3HC4_3

Protein Analysis

190

Amino Acids

21.17

Weight (kDa)

4.72

Isoelectric Point (pI)

50.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	135 - 183	3.7e-15	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	136 - 177	2.1e-06	Ring finger domain
Prok-RING_4	PF14447	137 - 180	8.7e-06	Prokaryotic RING finger family 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24204 AT4G24204 AT4G24204
fragaria_vesca	FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_2g33452 FvH4_2g33452 FvH4_2g33452
malus_domestica	MD08G1089900.v1.1 MD15G1074300.v1.1 MD15G1291000.v1.1
prunus_persica	Prupe.1G427200_v2.0.a1 Prupe.6G226000_v2.0.a1
pyrus_communis	pycom02g14610 pycom08g07330 pycom15g06950 pycom15g25460
rosa_chinensis	RchiOBHm_Chr2g0107111 RchiOBHm_Chr6g0309061
rosa_laevigata	RLG00000010593 RLG00000017555
rosa_multiflora	Rmu_sc0002945.1_g000008
rosa_roxburghii	Rroxscaffold_2G00136600
rosa_rugosa	Rorug02G0140300 Rorug06G0369400
rosa_samantha	Rh2AG191200 Rh2BG202900 Rh2CG196200 Rh2DG198400 Rh6AG482100 Rh6BG490900 Rh6CG496000 Rh6DG482600
rosa_wichuraiana	Rw2G015100 Rw6G041970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	479
AciI	CCGC	1 cut(s)	456
AcoI	YGGCCR	1 cut(s)	457
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	1 cut(s)	432
AflIII	ACRYGT	2 cut(s)	302, 515
AgsI	TTSAA	1 cut(s)	44
AluBI	AGCT	2 cut(s)	40, 378
AluI	AGCT	2 cut(s)	40, 378
Alw21I	GWGCWC	2 cut(s)	380, 487
Alw26I	GTCTC	3 cut(s)	212, 234, 500
Alw44I	GTGCAC	1 cut(s)	483
AoxI	GGCC	1 cut(s)	457
ApaLI	GTGCAC	1 cut(s)	483
ApeKI	GCWGC	5 cut(s)	336, 339, 342, 357, 563
AspLEI	GCGC	1 cut(s)	138
BaeGI	GKGCMC	1 cut(s)	487
BanII	GRGCYC	1 cut(s)	380
BauI	CACGAG	1 cut(s)	131
BbsI	GAAGAC	1 cut(s)	393
Bbv12I	GWGCWC	2 cut(s)	380, 487
BbvI	GCAGC	5 cut(s)	348, 351, 354, 369, 550
BccI	CCATC	2 cut(s)	11, 295
BceAI	ACGGC	1 cut(s)	350
BcoDI	GTCTC	3 cut(s)	212, 234, 500
BfaI	CTAG	1 cut(s)	14
BfuAI	ACCTGC	1 cut(s)	479
BisI	GCNGC	6 cut(s)	337, 340, 343, 358, 457, 564
BlsI	GCNGC	6 cut(s)	338, 341, 344, 359, 458, 565
BmiI	GGNNCC	1 cut(s)	450
BpiI	GAAGAC	1 cut(s)	393
Bsa29I	ATCGAT	1 cut(s)	47
BsaI	GGTCTC	1 cut(s)	500
Bsc4I	CCNNNNNNNGG	1 cut(s)	432
Bse118I	RCCGGY	1 cut(s)	268
Bse3DI	GCAATG	2 cut(s)	150, 367
BseCI	ATCGAT	1 cut(s)	47
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	1 cut(s)	432
BseMI	GCAATG	2 cut(s)	150, 367
BseMII	CTCAG	1 cut(s)	71
BseRI	GAGGAG	2 cut(s)	230, 370
BseSI	GKGCMC	1 cut(s)	487
BseXI	GCAGC	5 cut(s)	348, 351, 354, 369, 550
BshFI	GGCC	1 cut(s)	459
BshVI	ATCGAT	1 cut(s)	47
BsiHKAI	GWGCWC	2 cut(s)	380, 487
BsiSI	CCGG	1 cut(s)	269
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	1 cut(s)	432
BsmAI	GTCTC	3 cut(s)	212, 234, 500
BsmFI	GGGAC	1 cut(s)	313
BsmI	GAATGC	1 cut(s)	182
BsnI	GGCC	1 cut(s)	459
Bso31I	GGTCTC	1 cut(s)	500
Bsp1286I	GDGCHC	2 cut(s)	380, 487
Bsp143I	GATC	1 cut(s)	48
BspACI	CCGC	1 cut(s)	456
BspANI	GGCC	1 cut(s)	459
BspCNI	CTCAG	1 cut(s)	70
BspDI	ATCGAT	1 cut(s)	47
BspHI	TCATGA	1 cut(s)	186
BspLI	GGNNCC	1 cut(s)	450
BspMI	ACCTGC	1 cut(s)	479
BspTNI	GGTCTC	1 cut(s)	500
BsrDI	GCAATG	2 cut(s)	150, 367
BsrFI	RCCGGY	1 cut(s)	268
BssAI	RCCGGY	1 cut(s)	268
BssMI	GATC	1 cut(s)	48
BssSI	CACGAG	1 cut(s)	131
Bst2BI	CACGAG	1 cut(s)	131
Bst4CI	ACNGT	2 cut(s)	245, 464
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	238
BstHHI	GCGC	1 cut(s)	138
BstKTI	GATC	1 cut(s)	51
BstMAI	GTCTC	3 cut(s)	212, 234, 500
BstMBI	GATC	1 cut(s)	48
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 342
BstNSI	RCATGY	2 cut(s)	306, 519
BstSLI	GKGCMC	1 cut(s)	487
BstV1I	GCAGC	5 cut(s)	348, 351, 354, 369, 550
BstV2I	GAAGAC	1 cut(s)	393
Bsu15I	ATCGAT	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	459
BsuTUI	ATCGAT	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	238
BtsI	GCAGTG	1 cut(s)	164
BtsIMutI	CAGTG	3 cut(s)	164, 250, 460
BveI	ACCTGC	1 cut(s)	479
Cac8I	GCNNGC	1 cut(s)	270
CciI	TCATGA	1 cut(s)	186
CfoI	GCGC	1 cut(s)	138
Cfr10I	RCCGGY	1 cut(s)	268
ClaI	ATCGAT	1 cut(s)	47
CseI	GACGC	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	4 cut(s)	187, 303, 395, 516
CviJI	RGCY	5 cut(s)	40, 61, 268, 378, 459
CviKI_1	RGCY	5 cut(s)	40, 61, 268, 378, 459
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
EaeI	YGGCCR	1 cut(s)	457
Ecl136II	GAGCTC	1 cut(s)	378
Eco24I	GRGCYC	1 cut(s)	380
Eco31I	GGTCTC	1 cut(s)	500
Eco53kI	GAGCTC	1 cut(s)	378
EcoICRI	GAGCTC	1 cut(s)	378
EcoT38I	GRGCYC	1 cut(s)	380
FaeI	CATG	4 cut(s)	190, 306, 398, 519
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	4 cut(s)	186, 302, 394, 515
FauNDI	CATATG	1 cut(s)	295
Fnu4HI	GCNGC	6 cut(s)	337, 340, 343, 358, 457, 564
FokI	GGATG	1 cut(s)	245
FriOI	GRGCYC	1 cut(s)	380
Fsp4HI	GCNGC	6 cut(s)	337, 340, 343, 358, 457, 564
FspBI	CTAG	1 cut(s)	14
GlaI	GCGC	1 cut(s)	137
GluI	GCNGC	6 cut(s)	337, 340, 343, 358, 457, 564
HaeIII	GGCC	1 cut(s)	459
HapII	CCGG	1 cut(s)	269
HgaI	GACGC	1 cut(s)	103
HhaI	GCGC	1 cut(s)	138
Hin1II	CATG	4 cut(s)	190, 306, 398, 519
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	2 cut(s)	323, 534
HpaII	CCGG	1 cut(s)	269
Hpy166II	GTNNAC	1 cut(s)	485
Hpy188I	TCNGA	4 cut(s)	36, 385, 522, 543
Hpy188III	TCNNGA	2 cut(s)	187, 327
Hpy8I	GTNNAC	1 cut(s)	485
HpyAV	CCTTC	1 cut(s)	72
HpyCH4III	ACNGT	2 cut(s)	245, 464
HpyCH4V	TGCA	5 cut(s)	155, 182, 336, 394, 485
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 342
HpyF3I	CTNAG	1 cut(s)	57
Hsp92II	CATG	4 cut(s)	190, 306, 398, 519
HspAI	GCGC	1 cut(s)	136
KroI	GCCGGC	1 cut(s)	268
KroNI	GCCGGC	1 cut(s)	270
Kzo9I	GATC	1 cut(s)	48
LmnI	GCTCC	1 cut(s)	383
LpnPI	CCDG	4 cut(s)	258, 282, 312, 484
Lsp1109I	GCAGC	5 cut(s)	348, 351, 354, 369, 550
MaeI	CTAG	1 cut(s)	14
MaeIII	GTNAC	2 cut(s)	115, 305
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
MboII	GAAGA	4 cut(s)	398, 415, 543, 564
MhlI	GDGCHC	2 cut(s)	380, 487
MluCI	AATT	5 cut(s)	27, 67, 156, 331, 369
MnlI	CCTC	4 cut(s)	208, 223, 391, 426
MroNI	GCCGGC	1 cut(s)	268
MseI	TTAA	2 cut(s)	71, 161
MspI	CCGG	1 cut(s)	269
Mva1269I	GAATGC	1 cut(s)	182
MwoI	GCNNNNNNNGC	2 cut(s)	152, 342
NaeI	GCCGGC	1 cut(s)	270
NdeI	CATATG	1 cut(s)	295
NdeII	GATC	1 cut(s)	48
NgoMIV	GCCGGC	1 cut(s)	268
NlaIII	CATG	4 cut(s)	190, 306, 398, 519
NlaIV	GGNNCC	1 cut(s)	450
NmuCI	GTSAC	2 cut(s)	115, 305
NspI	RCATGY	2 cut(s)	306, 519
PagI	TCATGA	1 cut(s)	186
PciI	ACATGT	2 cut(s)	302, 515
PctI	GAATGC	1 cut(s)	182
PdiI	GCCGGC	1 cut(s)	270
PfeI	GAWTC	2 cut(s)	323, 534
PkrI	GCNGC	6 cut(s)	338, 341, 344, 359, 458, 565
PscI	ACATGT	2 cut(s)	302, 515
Psp124BI	GAGCTC	1 cut(s)	380
PspN4I	GGNNCC	1 cut(s)	450
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SacI	GAGCTC	1 cut(s)	380
SaqAI	TTAA	2 cut(s)	71, 161
SatI	GCNGC	6 cut(s)	337, 340, 343, 358, 457, 564
Sau3AI	GATC	1 cut(s)	48
SduI	GDGCHC	2 cut(s)	380, 487
SetI	ASST	4 cut(s)	42, 89, 380, 473
Sse9I	AATT	5 cut(s)	27, 67, 156, 331, 369
SsiI	CCGC	1 cut(s)	456
SspMI	CTAG	1 cut(s)	14
SstI	GAGCTC	1 cut(s)	380
TaaI	ACNGT	2 cut(s)	245, 464
TaqI	TCGA	2 cut(s)	47, 529
TasI	AATT	5 cut(s)	27, 67, 156, 331, 369
TauI	GCSGC	1 cut(s)	459
TfiI	GAWTC	2 cut(s)	323, 534
Tru1I	TTAA	2 cut(s)	71, 161
Tru9I	TTAA	2 cut(s)	71, 161
TscAI	CASTG	3 cut(s)	171, 250, 467
TseFI	GTSAC	2 cut(s)	115, 305
TseI	GCWGC	5 cut(s)	336, 339, 342, 357, 563
Tsp45I	GTSAC	2 cut(s)	115, 305
TspDTI	ATGAA	3 cut(s)	20, 175, 526
TspRI	CASTG	3 cut(s)	171, 250, 467
VneI	GTGCAC	1 cut(s)	483
XceI	RCATGY	2 cut(s)	306, 519
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.