Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002655

Physical Location & Seq

Genomic Coordinates Reverse (-)

36729600 .. 36732207

Gene Structure 2608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G427200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGTACCGTCCGATGTGGGCGCATCCGGCTCCTCCAGCCGGCCATCAGCGGTGGCAAGAGACTTGGGCGCGCCTCCTCACTCCTTTGACCCTTTGGATATGCGTTTCGGTGAGTCTCCGGTACGGGTATTATGGCGACCGTCGGATGGAGATTGGGCCGAACTCCTCTCGCTTGATGAAGGCTAGCGCTGTCTTTGTAGAACATGTTGAAGTGAGAGATGTTGACAGGAAAGGGGTCTCTCTCTATGCTTTCTCTGAAGAGCCTGAATTGAGCCACCAAACCAATTGGACTGTCTCCAATTACTTGATTGTTGGGTCCTATAGTCGCAAGGGATTTTCCTTCTGGTTAAACAAGGGTTCAAGGATATCCATGAGAGTGGAAGCTCATGCCACTACATTAAATAAACTCCAAGTTGTTATGCTTAAAGGGGAACAAAAGATTGAAATATTGGAGCCGGAACATACAAGTTCTCAAGATGGCCTTGCCTCTGAGGAAACCAAAATCGGTAAAGAAGCTGAGTACAATATTGAGGAAGATGACAAGTACTACCTTGACATCATAAACACAAAACCTAGAGGCATAATCATAACACTGAATGTAAATGTTTCGTCAACGATGTATGACATTACGAAAGCTAAGGCCATCTGCTCAACAACAAAGGGTTCATGCCGGCTCAGACTAGTATTCCCCAATACTCACTATGTCATACTAACCACACCTAACAATGGGTATCTTGGTGATTGGTACATTGAGCTTTCATTTGTGGCCCGTGTCGTAACCTACATTGCAATTTTAGGGTTTATTGTGGTGACTATTTTTCTTATATTGAAATACCTTGGCGCCTGCGATGGTGAGAGTAGTACCGTAGTAGAAAGAGTAGAGGAAGAAGTTAATGAGACTTACCCTATAGTGCCACAGAAGAATATGCGACGGACATATGGGACAAATGAAGAAGATGAAGAAGATCCAGGAGCATCTAGTAGCTCCTCAGAGGAATTATATGATGAAAAATTATGCATAATTTGTTATGATGAGCAGCGCAACTCCTTCTTCGTTCCCTGTGGTCATTGTGCCACCTGCTATGACTGTGCTCAGAGGATTATGGATGGGGAGAATAAGGTGTGTCCAATATGTAGAAGGCTCATTCACAAAGTGAGGAAATTGTTTAACCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4792 DUF4793 zf-C3HC4_3

Protein Analysis

392

Amino Acids

44.7

Weight (kDa)

5.93

Isoelectric Point (pI)

47.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24204 AT4G24204 AT4G24204
fragaria_vesca	FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_2g33452 FvH4_2g33452 FvH4_2g33452
malus_domestica	MD08G1089900.v1.1 MD15G1074300.v1.1 MD15G1291000.v1.1
prunus_persica	Prupe.1G427200_v2.0.a1 Prupe.6G226000_v2.0.a1
pyrus_communis	pycom02g14610 pycom08g07330 pycom15g06950 pycom15g25460
rosa_chinensis	RchiOBHm_Chr2g0107111 RchiOBHm_Chr6g0309061
rosa_laevigata	RLG00000010593 RLG00000017555
rosa_multiflora	Rmu_sc0002945.1_g000008
rosa_roxburghii	Rroxscaffold_2G00136600
rosa_rugosa	Rorug02G0140300 Rorug06G0369400
rosa_samantha	Rh2AG191200 Rh2BG202900 Rh2CG196200 Rh2DG198400 Rh6AG482100 Rh6BG490900 Rh6CG496000 Rh6DG482600
rosa_wichuraiana	Rw2G015100 Rw6G041970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1085
Acc36I	ACCTGC	1 cut(s)	1085
AccB1I	GGYRCC	1 cut(s)	839
AccII	CGCG	1 cut(s)	70
AciI	CCGC	1 cut(s)	49
AclWI	GGATC	1 cut(s)	959
AcoI	YGGCCR	1 cut(s)	40
AcuI	CTGAAG	1 cut(s)	276
AcyI	GRCGYC	1 cut(s)	840
AdeI	CACNNNGTG	1 cut(s)	1153
AfaI	GTAC	6 cut(s)	5, 122, 521, 545, 746, 862
AfeI	AGCGCT	1 cut(s)	187
AfiI	CCNNNNNNNGG	3 cut(s)	38, 145, 725
AflIII	ACRYGT	1 cut(s)	202
AgsI	TTSAA	4 cut(s)	209, 360, 443, 829
AhlI	ACTAGT	1 cut(s)	679
AjnI	CCWGG	1 cut(s)	967
AluBI	AGCT	5 cut(s)	383, 515, 635, 754, 984
AluI	AGCT	5 cut(s)	383, 515, 635, 754, 984
Alw21I	GWGCWC	1 cut(s)	1093
Alw26I	GTCTC	5 cut(s)	53, 119, 241, 298, 890
AlwI	GGATC	1 cut(s)	959
Aor51HI	AGCGCT	1 cut(s)	187
AoxI	GGCC	5 cut(s)	40, 155, 478, 639, 765
ApeKI	GCWGC	1 cut(s)	1036
AscI	GGCGCGCC	1 cut(s)	68
AspLEI	GCGC	6 cut(s)	22, 70, 72, 188, 842, 1041
AspS9I	GGNCC	3 cut(s)	155, 315, 766
AsuHPI	GGTGA	4 cut(s)	121, 749, 820, 863
AsuNHI	GCTAGC	1 cut(s)	182
AvaII	GGWCC	1 cut(s)	315
BanI	GGYRCC	1 cut(s)	839
Bbv12I	GWGCWC	1 cut(s)	1093
BbvI	GCAGC	1 cut(s)	1048
BccI	CCATC	6 cut(s)	51, 139, 470, 650, 842, 1100
BciT130I	CCWGG	1 cut(s)	969
BcoDI	GTCTC	5 cut(s)	53, 119, 241, 298, 890
BcuI	ACTAGT	1 cut(s)	679
BfaI	CTAG	4 cut(s)	183, 573, 680, 978
BfmI	CTRYAG	2 cut(s)	319, 906
BfoI	RGCGCY	2 cut(s)	189, 843
BfuAI	ACCTGC	1 cut(s)	1085
BisI	GCNGC	1 cut(s)	1037
BlsI	GCNGC	1 cut(s)	1038
BmcAI	AGTACT	1 cut(s)	545
Bme1390I	CCNGG	1 cut(s)	969
Bme18I	GGWCC	1 cut(s)	315
BmgT120I	GGNCC	3 cut(s)	155, 315, 766
BmiI	GGNNCC	4 cut(s)	30, 316, 453, 841
BmrFI	CCNGG	1 cut(s)	969
BmsI	GCATC	2 cut(s)	31, 983
BmtI	GCTAGC	1 cut(s)	186
BpmI	CTGGAG	1 cut(s)	18
Bpu10I	CCTNAGC	1 cut(s)	636
BpuEI	CTTGAG	1 cut(s)	456
BsaHI	GRCGYC	1 cut(s)	840
BsaI	GGTCTC	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	835
BsaWI	WCCGGW	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 145, 725
Bse118I	RCCGGY	2 cut(s)	38, 669
Bse3DI	GCAATG	1 cut(s)	783
BseBI	CCWGG	1 cut(s)	969
BseDI	CCNNGG	1 cut(s)	835
BseGI	GGATG	3 cut(s)	22, 150, 1111
BseLI	CCNNNNNNNGG	3 cut(s)	38, 145, 725
BseMI	GCAATG	1 cut(s)	783
BseMII	CTCAG	5 cut(s)	480, 507, 688, 1002, 1106
BsePI	GCGCGC	1 cut(s)	68
BseRI	GAGGAG	4 cut(s)	21, 65, 154, 976
BseXI	GCAGC	1 cut(s)	1048
Bsh1236I	CGCG	1 cut(s)	70
Bsh1285I	CGRYCG	1 cut(s)	139
BshFI	GGCC	5 cut(s)	42, 157, 480, 641, 767
BshNI	GGYRCC	1 cut(s)	839
BsiEI	CGRYCG	1 cut(s)	139
BsiHKAI	GWGCWC	1 cut(s)	1093
BsiSI	CCGG	5 cut(s)	26, 39, 118, 455, 670
BslFI	GGGAC	1 cut(s)	955
BslI	CCNNNNNNNGG	3 cut(s)	38, 145, 725
BsmAI	GTCTC	5 cut(s)	53, 119, 241, 298, 890
BsmFI	GGGAC	1 cut(s)	955
BsnI	GGCC	5 cut(s)	42, 157, 480, 641, 767
Bso31I	GGTCTC	1 cut(s)	241
Bsp1286I	GDGCHC	1 cut(s)	1093
Bsp143I	GATC	1 cut(s)	964
BspACI	CCGC	1 cut(s)	49
BspANI	GGCC	5 cut(s)	42, 157, 480, 641, 767
BspCNI	CTCAG	5 cut(s)	481, 508, 687, 1001, 1105
BspFNI	CGCG	1 cut(s)	70
BspLI	GGNNCC	4 cut(s)	30, 316, 453, 841
BspMI	ACCTGC	1 cut(s)	1085
BspOI	GCTAGC	1 cut(s)	186
BspPI	GGATC	1 cut(s)	959
BspQI	GCTCTTC	1 cut(s)	252
BspT107I	GGYRCC	1 cut(s)	839
BspTNI	GGTCTC	1 cut(s)	241
BsrDI	GCAATG	1 cut(s)	783
BsrFI	RCCGGY	2 cut(s)	38, 669
BssAI	RCCGGY	2 cut(s)	38, 669
BssECI	CCNNGG	1 cut(s)	835
BssHII	GCGCGC	1 cut(s)	68
BssMI	GATC	1 cut(s)	964
BssNI	GRCGYC	1 cut(s)	840
BssT1I	CCWWGG	1 cut(s)	835
Bst2UI	CCWGG	1 cut(s)	969
Bst4CI	ACNGT	5 cut(s)	8, 140, 292, 865, 1088
Bst6I	CTCTTC	1 cut(s)	252
BstACI	GRCGYC	1 cut(s)	840
BstC8I	GCNNGC	5 cut(s)	40, 70, 184, 671, 844
BstDEI	CTNAG	6 cut(s)	489, 516, 636, 674, 988, 1092
BstF5I	GGATG	3 cut(s)	22, 150, 1111
BstFNI	CGCG	1 cut(s)	70
BstH2I	RGCGCY	2 cut(s)	189, 843
BstHHI	GCGC	6 cut(s)	22, 70, 72, 188, 842, 1041
BstKTI	GATC	1 cut(s)	967
BstMAI	GTCTC	5 cut(s)	53, 119, 241, 298, 890
BstMBI	GATC	1 cut(s)	964
BstMCI	CGRYCG	1 cut(s)	139
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 35
BstNI	CCWGG	1 cut(s)	969
BstNSI	RCATGY	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	967
BstSFI	CTRYAG	2 cut(s)	319, 906
BstUI	CGCG	1 cut(s)	70
BstV1I	GCAGC	1 cut(s)	1048
BstX2I	RGATCY	1 cut(s)	964
BstXI	CCANNNNNNTGG	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	964
BsuRI	GGCC	5 cut(s)	42, 157, 480, 641, 767
BtgZI	GCGATG	1 cut(s)	861
BtsCI	GGATG	3 cut(s)	22, 150, 1111
BtsIMutI	CAGTG	1 cut(s)	590
BveI	ACCTGC	1 cut(s)	1085
Cac8I	GCNNGC	5 cut(s)	40, 70, 184, 671, 844
CfoI	GCGC	6 cut(s)	22, 70, 72, 188, 842, 1041
Cfr10I	RCCGGY	2 cut(s)	38, 669
Cfr13I	GGNCC	3 cut(s)	155, 315, 766
Csp6I	GTAC	6 cut(s)	4, 121, 520, 544, 745, 861
CviAII	CATG	4 cut(s)	203, 370, 386, 666
CviQI	GTAC	6 cut(s)	4, 121, 520, 544, 745, 861
DdeI	CTNAG	6 cut(s)	489, 516, 636, 674, 988, 1092
DinI	GGCGCC	1 cut(s)	841
DpnI	GATC	1 cut(s)	966
DpnII	GATC	1 cut(s)	964
DraIII	CACNNNGTG	1 cut(s)	1153
EaeI	YGGCCR	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	835
Eco31I	GGTCTC	1 cut(s)	241
Eco32I	GATATC	1 cut(s)	366
Eco47I	GGWCC	1 cut(s)	315
Eco47III	AGCGCT	1 cut(s)	187
Eco57I	CTGAAG	1 cut(s)	276
EcoO109I	RGGNCCY	1 cut(s)	315
EcoRII	CCWGG	1 cut(s)	967
EcoRV	GATATC	1 cut(s)	366
EcoT14I	CCWWGG	1 cut(s)	835
EcoT22I	ATGCAT	1 cut(s)	1019
EgeI	GGCGCC	1 cut(s)	841
EheI	GGCGCC	1 cut(s)	841
ErhI	CCWWGG	1 cut(s)	835
FaeI	CATG	4 cut(s)	206, 373, 389, 669
FalI	AAGNNNNNCTT	2 cut(s)	465, 497
FaqI	GGGAC	1 cut(s)	955
FatI	CATG	4 cut(s)	202, 369, 385, 665
FauNDI	CATATG	1 cut(s)	937
Fnu4HI	GCNGC	1 cut(s)	1037
FokI	GGATG	3 cut(s)	9, 157, 1118
Fsp4HI	GCNGC	1 cut(s)	1037
FspBI	CTAG	4 cut(s)	183, 573, 680, 978
GlaI	GCGC	6 cut(s)	21, 69, 71, 187, 841, 1040
GluI	GCNGC	1 cut(s)	1037
GsuI	CTGGAG	1 cut(s)	18
HaeII	RGCGCY	2 cut(s)	189, 843
HaeIII	GGCC	5 cut(s)	42, 157, 480, 641, 767
HapII	CCGG	5 cut(s)	26, 39, 118, 455, 670
HhaI	GCGC	6 cut(s)	22, 70, 72, 188, 842, 1041
Hin1I	GRCGYC	1 cut(s)	840
Hin1II	CATG	4 cut(s)	206, 373, 389, 669
Hin6I	GCGC	6 cut(s)	20, 68, 70, 186, 840, 1039
HinP1I	GCGC	6 cut(s)	20, 68, 70, 186, 840, 1039
HincII	GTYRAC	2 cut(s)	223, 612
HindII	GTYRAC	2 cut(s)	223, 612
HinfI	GANTC	1 cut(s)	112
HpaII	CCGG	5 cut(s)	26, 39, 118, 455, 670
HphI	GGTGA	4 cut(s)	121, 749, 820, 863
Hpy166II	GTNNAC	2 cut(s)	223, 612
Hpy188I	TCNGA	7 cut(s)	12, 144, 256, 490, 677, 991, 1095
Hpy188III	TCNNGA	1 cut(s)	473
Hpy8I	GTNNAC	2 cut(s)	223, 612
Hpy99I	CGWCG	2 cut(s)	144, 933
HpyAV	CCTTC	4 cut(s)	172, 349, 1057, 1131
HpyCH4III	ACNGT	5 cut(s)	8, 140, 292, 865, 1088
HpyCH4V	TGCA	2 cut(s)	788, 1017
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 35
HpyF3I	CTNAG	6 cut(s)	489, 516, 636, 674, 988, 1092
Hsp92I	GRCGYC	1 cut(s)	840
Hsp92II	CATG	4 cut(s)	206, 373, 389, 669
HspAI	GCGC	6 cut(s)	20, 68, 70, 186, 840, 1039
KasI	GGCGCC	1 cut(s)	839
KroI	GCCGGC	2 cut(s)	38, 669
KroNI	GCCGGC	2 cut(s)	40, 671
Kzo9I	GATC	1 cut(s)	964
LguI	GCTCTTC	1 cut(s)	252
LmnI	GCTCC	4 cut(s)	34, 451, 971, 989
Lsp1109I	GCAGC	1 cut(s)	1048
LweI	GCATC	2 cut(s)	31, 983
MaeI	CTAG	4 cut(s)	183, 573, 680, 978
MaeIII	GTNAC	2 cut(s)	775, 808
MalI	GATC	1 cut(s)	966
MboI	GATC	1 cut(s)	964
MboII	GAAGA	9 cut(s)	269, 545, 896, 931, 962, 965, 971, 974, 1042
MfeI	CAATTG	1 cut(s)	283
MflI	RGATCY	1 cut(s)	964
MhlI	GDGCHC	1 cut(s)	1093
MluCI	AATT	8 cut(s)	266, 283, 298, 789, 995, 1010, 1020, 1160
Mly113I	GGCGCC	1 cut(s)	840
MlyI	GAGTC	1 cut(s)	121
MmeI	TCCRAC	1 cut(s)	122
Mph1103I	ATGCAT	1 cut(s)	1019
MroNI	GCCGGC	2 cut(s)	38, 669
MseI	TTAA	6 cut(s)	347, 398, 423, 891, 1167, 1174
MslI	CAYNNNNRTG	1 cut(s)	374
MspA1I	CMGCKG	1 cut(s)	49
MspI	CCGG	5 cut(s)	26, 39, 118, 455, 670
MspR9I	CCNGG	1 cut(s)	969
MunI	CAATTG	1 cut(s)	283
MvaI	CCWGG	1 cut(s)	969
MvnI	CGCG	1 cut(s)	70
MwoI	GCNNNNNNNGC	2 cut(s)	26, 35
NaeI	GCCGGC	2 cut(s)	40, 671
NarI	GGCGCC	1 cut(s)	840
NdeI	CATATG	1 cut(s)	937
NdeII	GATC	1 cut(s)	964
NgoMIV	GCCGGC	2 cut(s)	38, 669
NheI	GCTAGC	1 cut(s)	182
NlaIII	CATG	4 cut(s)	206, 373, 389, 669
NlaIV	GGNNCC	4 cut(s)	30, 316, 453, 841
NmuCI	GTSAC	1 cut(s)	808
NsiI	ATGCAT	1 cut(s)	1019
NspI	RCATGY	1 cut(s)	206
PalAI	GGCGCGCC	1 cut(s)	68
PaqCI	CACCTGC	1 cut(s)	1085
PauI	GCGCGC	1 cut(s)	68
PciI	ACATGT	1 cut(s)	202
PciSI	GCTCTTC	1 cut(s)	252
PdiI	GCCGGC	2 cut(s)	40, 671
PfoI	TCCNGGA	1 cut(s)	967
PkrI	GCNGC	1 cut(s)	1038
PleI	GAGTC	1 cut(s)	120
PluTI	GGCGCC	1 cut(s)	843
PpsI	GAGTC	1 cut(s)	120
PpuMI	RGGWCCY	1 cut(s)	315
PscI	ACATGT	1 cut(s)	202
Psp5II	RGGWCCY	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	967
PspGI	CCWGG	1 cut(s)	967
PspN4I	GGNNCC	4 cut(s)	30, 316, 453, 841
PspPI	GGNCC	3 cut(s)	155, 315, 766
PspPPI	RGGWCCY	1 cut(s)	315
PsuI	RGATCY	1 cut(s)	964
PteI	GCGCGC	1 cut(s)	68
RsaI	GTAC	6 cut(s)	5, 122, 521, 545, 746, 862
RsaNI	GTAC	6 cut(s)	4, 121, 520, 544, 745, 861
RseI	CAYNNNNRTG	1 cut(s)	374
SapI	GCTCTTC	1 cut(s)	252
SaqAI	TTAA	6 cut(s)	347, 398, 423, 891, 1167, 1174
SatI	GCNGC	1 cut(s)	1037
Sau3AI	GATC	1 cut(s)	964
Sau96I	GGNCC	3 cut(s)	155, 315, 766
ScaI	AGTACT	1 cut(s)	545
SchI	GAGTC	1 cut(s)	121
ScrFI	CCNGG	1 cut(s)	969
SduI	GDGCHC	1 cut(s)	1093
SfaNI	GCATC	2 cut(s)	31, 983
SfcI	CTRYAG	2 cut(s)	319, 906
SfoI	GGCGCC	1 cut(s)	841
SgsI	GGCGCGCC	1 cut(s)	68
SinI	GGWCC	1 cut(s)	315
SmiMI	CAYNNNNRTG	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	471
SmoI	CTYRAG	1 cut(s)	471
SpeI	ACTAGT	1 cut(s)	679
Sse9I	AATT	8 cut(s)	266, 283, 298, 789, 995, 1010, 1020, 1160
SsiI	CCGC	1 cut(s)	49
SspDI	GGCGCC	1 cut(s)	839
SspI	AATATT	2 cut(s)	447, 526
SspMI	CTAG	4 cut(s)	183, 573, 680, 978
StyD4I	CCNGG	1 cut(s)	967
StyI	CCWWGG	1 cut(s)	835
TaaI	ACNGT	5 cut(s)	8, 140, 292, 865, 1088
TasI	AATT	8 cut(s)	266, 283, 298, 789, 995, 1010, 1020, 1160
TatI	WGTACW	2 cut(s)	519, 543
Tru1I	TTAA	6 cut(s)	347, 398, 423, 891, 1167, 1174
Tru9I	TTAA	6 cut(s)	347, 398, 423, 891, 1167, 1174
TscAI	CASTG	1 cut(s)	597
TseFI	GTSAC	1 cut(s)	808
TseI	GCWGC	1 cut(s)	1036
Tsp45I	GTSAC	1 cut(s)	808
TspDTI	ATGAA	6 cut(s)	191, 654, 747, 963, 972, 1020
TspGWI	ACGGA	1 cut(s)	946
TspRI	CASTG	1 cut(s)	597
VpaK11BI	GGWCC	1 cut(s)	315
XceI	RCATGY	1 cut(s)	206
XspI	CTAG	4 cut(s)	183, 573, 680, 978
ZrmI	AGTACT	1 cut(s)	545
Zsp2I	ATGCAT	1 cut(s)	1019

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.