Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0002655

Physical Location & Seq

Genomic Coordinates Reverse (-)

5897287 .. 5899416

Gene Structure 2130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g07330.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGTACCGTCCGGTGTGGGCCCACCCGACGCCTCCGGCGGGCTCTCAGCGGTGGCAGGAGACTTGGGCTCGCCTCCTCACTCCCTTGACCCTCTGGATATGTGTTTCGGTGAGTCTCCGATACGGGTACTATGGCGACCGTAGGATGGAGCTCGGGTCGAGCTCTTCGCGATTGATGAAGGCTAGTGCTGTGTTTGTCAAACATGTTGAAGTGAGAGATGTTGACAGGAAAGGGGTTTCTCTCTACGCCTTTTCTGAAGAGCCTAAATTGAACTACCAAACAAATTGGAGTGTGCACAATTACTTGATTATTCCATCGTATAATCACAAGGGATTTTCCTTCTGGTTAAACAAGGGTTCAAGTTTGTCCATGAGATTGGAAGCTCATGCTACTACCTTAAATCAACTACAAGTTGCTATGCTTAAAGGGGAACAAAATATCGAAATATTGCAGCCGGAACAAACAAGTTCTCAGGACAGCCTCGCCTTCAATGAACCCAAAATCGGTAAAGAAGCCGAGTACAATATTGAGGAAGATGACAAGTATTACCTTGAATTCATAAGCACAAATCCTAATAGCGTAATTGTATCAGTGAATGTAAGCGTTTCATCAACGATGTATGATGTTACGAAAGCTAAGGACGTCTGTTCAACAACGAAGGGGTCCTGCCGGCTCAGCCTTGTATTCCCCAATACTCACTATGTCATACTAACCACACCTAACAATGGAGATCTTGGTGACTGGTACATTGAGCTTTCGTTCGTGGCTCGTGTGGTAACCTACATTGCGATTTTAGGATTTATTGTGGTGGTTGTTTTTCTGATATTGAAATACCTTGGAGCCTGTGACGGTGATGATAGAACTTTAGTTGAAACAGCAGTGGAAGAAGTTAATGAGACTTACCCTATAGTGCCACAGAAGACGCTTCTTCGACAGACATACGGGACAAATGAAGAAGATGAAGATTCAGGAGCTTCTAGTAGCTCCTCGGAGGAATTATATGATGAGAAATTATGCGTAATTTGTTACGATGAGCAGCGCAATTCCTTCTTCGTTCCTTGTGGTCACTGTGCCACCTGCTATGACTGTGCTCAAAGGATCATGGATGGGGAGAATAGGGTGTGTCCAATATGTAGAAGGCTCATCCACAAAGTGAGAAAATTGTTCAATCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4792 DUF4793 zf-C3HC4_3

Protein Analysis

392

Amino Acids

44.43

Weight (kDa)

5.49

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24204 AT4G24204 AT4G24204
fragaria_vesca	FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_2g33452 FvH4_2g33452 FvH4_2g33452
malus_domestica	MD08G1089900.v1.1 MD15G1074300.v1.1 MD15G1291000.v1.1
prunus_persica	Prupe.1G427200_v2.0.a1 Prupe.6G226000_v2.0.a1
pyrus_communis	pycom02g14610 pycom08g07330 pycom15g06950 pycom15g25460
rosa_chinensis	RchiOBHm_Chr2g0107111 RchiOBHm_Chr6g0309061
rosa_laevigata	RLG00000010593 RLG00000017555
rosa_multiflora	Rmu_sc0002945.1_g000008
rosa_roxburghii	Rroxscaffold_2G00136600
rosa_rugosa	Rorug02G0140300 Rorug06G0369400
rosa_samantha	Rh2AG191200 Rh2BG202900 Rh2CG196200 Rh2DG198400 Rh6AG482100 Rh6BG490900 Rh6CG496000 Rh6DG482600
rosa_wichuraiana	Rw2G015100 Rw6G041970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1085
AatII	GACGTC	1 cut(s)	645
Acc36I	ACCTGC	1 cut(s)	1085
AccII	CGCG	1 cut(s)	169
AciI	CCGC	2 cut(s)	38, 49
AclWI	GGATC	1 cut(s)	1106
AcsI	RAATTY	1 cut(s)	554
AcuI	CTGAAG	1 cut(s)	276
AcyI	GRCGYC	2 cut(s)	29, 642
AdeI	CACNNNGTG	1 cut(s)	1153
AfaI	GTAC	4 cut(s)	5, 128, 521, 746
AfiI	CCNNNNNNNGG	4 cut(s)	38, 145, 503, 725
AflIII	ACRYGT	1 cut(s)	202
AgsI	TTSAA	9 cut(s)	209, 271, 360, 490, 554, 651, 829, 872, 1168
AluBI	AGCT	7 cut(s)	151, 162, 383, 635, 754, 974, 984
AluI	AGCT	7 cut(s)	151, 162, 383, 635, 754, 974, 984
Alw21I	GWGCWC	4 cut(s)	153, 164, 297, 1093
Alw26I	GTCTC	3 cut(s)	53, 119, 890
Alw44I	GTGCAC	1 cut(s)	293
AlwI	GGATC	1 cut(s)	1106
Ama87I	CYCGRG	1 cut(s)	152
AoxI	GGCC	1 cut(s)	18
ApaI	GGGCCC	1 cut(s)	22
ApaLI	GTGCAC	1 cut(s)	293
ApeKI	GCWGC	2 cut(s)	451, 1036
ApoI	RAATTY	1 cut(s)	554
AspLEI	GCGC	1 cut(s)	1041
AspS9I	GGNCC	3 cut(s)	18, 19, 663
AsuHPI	GGTGA	3 cut(s)	121, 749, 863
AvaI	CYCGRG	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	663
BaeGI	GKGCMC	2 cut(s)	22, 297
BanII	GRGCYC	5 cut(s)	22, 44, 70, 153, 164
BauI	CACGAG	1 cut(s)	768
BbsI	GAAGAC	1 cut(s)	926
Bbv12I	GWGCWC	4 cut(s)	153, 164, 297, 1093
BbvI	GCAGC	2 cut(s)	463, 1048
BccI	CCATC	3 cut(s)	139, 322, 1100
BcoDI	GTCTC	3 cut(s)	53, 119, 890
BfaI	CTAG	2 cut(s)	183, 978
BfmI	CTRYAG	1 cut(s)	906
BfuAI	ACCTGC	1 cut(s)	1085
BglII	AGATCT	1 cut(s)	730
BisI	GCNGC	2 cut(s)	452, 1037
BlpI	GCTNAGC	1 cut(s)	674
BlsI	GCNGC	2 cut(s)	453, 1038
Bme18I	GGWCC	1 cut(s)	663
BmeT110I	CYCGRG	1 cut(s)	152
BmgT120I	GGNCC	3 cut(s)	18, 19, 663
BmiI	GGNNCC	3 cut(s)	20, 664, 841
BpiI	GAAGAC	1 cut(s)	926
Bpu10I	CCTNAGC	1 cut(s)	636
Bpu1102I	GCTNAGC	1 cut(s)	674
BsaHI	GRCGYC	2 cut(s)	29, 642
BsaJI	CCNNGG	2 cut(s)	835, 987
BsaWI	WCCGGW	1 cut(s)	10
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bsc4I	CCNNNNNNNGG	4 cut(s)	38, 145, 503, 725
Bse118I	RCCGGY	1 cut(s)	669
Bse1I	ACTGG	1 cut(s)	746
Bse3DI	GCAATG	1 cut(s)	783
BseDI	CCNNGG	2 cut(s)	835, 987
BseGI	GGATG	3 cut(s)	150, 1111, 1143
BseLI	CCNNNNNNNGG	4 cut(s)	38, 145, 503, 725
BseMI	GCAATG	1 cut(s)	783
BseMII	CTCAG	3 cut(s)	59, 485, 688
BseNI	ACTGG	1 cut(s)	746
BseRI	GAGGAG	2 cut(s)	65, 976
BseSI	GKGCMC	2 cut(s)	22, 297
BseXI	GCAGC	2 cut(s)	463, 1048
Bsh1236I	CGCG	1 cut(s)	169
Bsh1285I	CGRYCG	1 cut(s)	139
BshFI	GGCC	1 cut(s)	20
BsiEI	CGRYCG	1 cut(s)	139
BsiHKAI	GWGCWC	4 cut(s)	153, 164, 297, 1093
BsiHKCI	CYCGRG	1 cut(s)	152
BsiSI	CCGG	4 cut(s)	11, 35, 455, 670
BslFI	GGGAC	1 cut(s)	958
BslI	CCNNNNNNNGG	4 cut(s)	38, 145, 503, 725
BsmAI	GTCTC	3 cut(s)	53, 119, 890
BsmFI	GGGAC	1 cut(s)	958
BsnI	GGCC	1 cut(s)	20
BsoBI	CYCGRG	1 cut(s)	152
Bsp120I	GGGCCC	1 cut(s)	18
Bsp1286I	GDGCHC	7 cut(s)	22, 44, 70, 153, 164, 297, 1093
Bsp143I	GATC	2 cut(s)	730, 1098
Bsp1720I	GCTNAGC	1 cut(s)	674
Bsp68I	TCGCGA	1 cut(s)	169
BspACI	CCGC	2 cut(s)	38, 49
BspANI	GGCC	1 cut(s)	20
BspCNI	CTCAG	3 cut(s)	58, 484, 687
BspFNI	CGCG	1 cut(s)	169
BspLI	GGNNCC	3 cut(s)	20, 664, 841
BspMI	ACCTGC	1 cut(s)	1085
BspPI	GGATC	1 cut(s)	1106
BspQI	GCTCTTC	2 cut(s)	169, 252
BsrDI	GCAATG	1 cut(s)	783
BsrFI	RCCGGY	1 cut(s)	669
BsrI	ACTGG	1 cut(s)	746
BssAI	RCCGGY	1 cut(s)	669
BssECI	CCNNGG	2 cut(s)	835, 987
BssMI	GATC	2 cut(s)	730, 1098
BssNI	GRCGYC	2 cut(s)	29, 642
BssSI	CACGAG	1 cut(s)	768
BssT1I	CCWWGG	1 cut(s)	835
Bst2BI	CACGAG	1 cut(s)	768
Bst4CI	ACNGT	5 cut(s)	8, 140, 851, 1070, 1088
Bst6I	CTCTTC	2 cut(s)	169, 252
BstACI	GRCGYC	2 cut(s)	29, 642
BstC8I	GCNNGC	3 cut(s)	40, 70, 671
BstDEI	CTNAG	4 cut(s)	45, 471, 636, 674
BstEII	GGTNACC	1 cut(s)	775
BstF5I	GGATG	3 cut(s)	150, 1111, 1143
BstFNI	CGCG	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	1041
BstKTI	GATC	2 cut(s)	733, 1101
BstMAI	GTCTC	3 cut(s)	53, 119, 890
BstMBI	GATC	2 cut(s)	730, 1098
BstMCI	CGRYCG	1 cut(s)	139
BstMWI	GCNNNNNNNGC	1 cut(s)	675
BstNSI	RCATGY	1 cut(s)	206
BstPI	GGTNACC	1 cut(s)	775
BstSFI	CTRYAG	1 cut(s)	906
BstSLI	GKGCMC	2 cut(s)	22, 297
BstUI	CGCG	1 cut(s)	169
BstV1I	GCAGC	2 cut(s)	463, 1048
BstV2I	GAAGAC	1 cut(s)	926
BstX2I	RGATCY	1 cut(s)	730
BstXI	CCANNNNNNTGG	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	730
BsuRI	GGCC	1 cut(s)	20
BtsCI	GGATG	3 cut(s)	150, 1111, 1143
BtsI	GCAGTG	1 cut(s)	885
BtsIMutI	CAGTG	3 cut(s)	597, 885, 1066
BtuMI	TCGCGA	1 cut(s)	169
BveI	ACCTGC	1 cut(s)	1085
Cac8I	GCNNGC	3 cut(s)	40, 70, 671
CfoI	GCGC	1 cut(s)	1041
Cfr10I	RCCGGY	1 cut(s)	669
Cfr13I	GGNCC	3 cut(s)	18, 19, 663
CseI	GACGC	2 cut(s)	37, 931
Csp6I	GTAC	4 cut(s)	4, 127, 520, 745
CviAII	CATG	4 cut(s)	203, 370, 386, 1102
CviQI	GTAC	4 cut(s)	4, 127, 520, 745
DdeI	CTNAG	4 cut(s)	45, 471, 636, 674
DpnI	GATC	2 cut(s)	732, 1100
DpnII	GATC	2 cut(s)	730, 1098
DraIII	CACNNNGTG	1 cut(s)	1153
Eam1104I	CTCTTC	2 cut(s)	169, 252
EarI	CTCTTC	2 cut(s)	169, 252
Ecl136II	GAGCTC	2 cut(s)	151, 162
Eco130I	CCWWGG	1 cut(s)	835
Eco24I	GRGCYC	5 cut(s)	22, 44, 70, 153, 164
Eco47I	GGWCC	1 cut(s)	663
Eco53kI	GAGCTC	2 cut(s)	151, 162
Eco57I	CTGAAG	1 cut(s)	276
Eco88I	CYCGRG	1 cut(s)	152
Eco91I	GGTNACC	1 cut(s)	775
EcoICRI	GAGCTC	2 cut(s)	151, 162
EcoO109I	RGGNCCY	1 cut(s)	663
EcoO65I	GGTNACC	1 cut(s)	775
EcoRI	GAATTC	1 cut(s)	554
EcoT14I	CCWWGG	1 cut(s)	835
EcoT38I	GRGCYC	5 cut(s)	22, 44, 70, 153, 164
ErhI	CCWWGG	1 cut(s)	835
FaeI	CATG	4 cut(s)	206, 373, 389, 1105
FaqI	GGGAC	1 cut(s)	958
FatI	CATG	4 cut(s)	202, 369, 385, 1101
FauI	CCCGC	1 cut(s)	31
Fnu4HI	GCNGC	2 cut(s)	452, 1037
FokI	GGATG	3 cut(s)	157, 1118, 1130
FriOI	GRGCYC	5 cut(s)	22, 44, 70, 153, 164
Fsp4HI	GCNGC	2 cut(s)	452, 1037
FspBI	CTAG	2 cut(s)	183, 978
GlaI	GCGC	1 cut(s)	1040
GluI	GCNGC	2 cut(s)	452, 1037
HaeIII	GGCC	1 cut(s)	20
HapII	CCGG	4 cut(s)	11, 35, 455, 670
HgaI	GACGC	2 cut(s)	37, 931
HhaI	GCGC	1 cut(s)	1041
Hin1I	GRCGYC	2 cut(s)	29, 642
Hin1II	CATG	4 cut(s)	206, 373, 389, 1105
Hin6I	GCGC	1 cut(s)	1039
HinP1I	GCGC	1 cut(s)	1039
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	2 cut(s)	112, 965
HpaII	CCGG	4 cut(s)	11, 35, 455, 670
HphI	GGTGA	3 cut(s)	121, 749, 863
Hpy166II	GTNNAC	2 cut(s)	223, 295
Hpy188I	TCNGA	4 cut(s)	119, 256, 822, 991
Hpy188III	TCNNGA	4 cut(s)	94, 168, 473, 969
Hpy8I	GTNNAC	2 cut(s)	223, 295
Hpy99I	CGWCG	1 cut(s)	31
HpyAV	CCTTC	6 cut(s)	172, 349, 496, 652, 1057, 1131
HpyCH4III	ACNGT	5 cut(s)	8, 140, 851, 1070, 1088
HpyCH4IV	ACGT	1 cut(s)	642
HpyCH4V	TGCA	2 cut(s)	295, 451
HpyF10VI	GCNNNNNNNGC	1 cut(s)	675
HpyF3I	CTNAG	4 cut(s)	45, 471, 636, 674
HpySE526I	ACGT	1 cut(s)	642
Hsp92I	GRCGYC	2 cut(s)	29, 642
Hsp92II	CATG	4 cut(s)	206, 373, 389, 1105
HspAI	GCGC	1 cut(s)	1039
KroI	GCCGGC	1 cut(s)	669
KroNI	GCCGGC	1 cut(s)	671
Kzo9I	GATC	2 cut(s)	730, 1098
LguI	GCTCTTC	2 cut(s)	169, 252
LmnI	GCTCC	4 cut(s)	148, 839, 971, 989
Lsp1109I	GCAGC	2 cut(s)	463, 1048
MaeI	CTAG	2 cut(s)	183, 978
MaeII	ACGT	1 cut(s)	642
MaeIII	GTNAC	6 cut(s)	625, 737, 775, 845, 1025, 1064
MalI	GATC	2 cut(s)	732, 1100
MboI	GATC	2 cut(s)	730, 1098
MflI	RGATCY	1 cut(s)	730
MhlI	GDGCHC	7 cut(s)	22, 44, 70, 153, 164, 297, 1093
MlyI	GAGTC	1 cut(s)	121
MnlI	CCTC	8 cut(s)	42, 83, 86, 101, 491, 523, 985, 997
MroNI	GCCGGC	1 cut(s)	669
MseI	TTAA	4 cut(s)	347, 398, 423, 891
MspA1I	CMGCKG	1 cut(s)	49
MspI	CCGG	4 cut(s)	11, 35, 455, 670
MvnI	CGCG	1 cut(s)	169
MwoI	GCNNNNNNNGC	1 cut(s)	675
NaeI	GCCGGC	1 cut(s)	671
NdeII	GATC	2 cut(s)	730, 1098
NgoMIV	GCCGGC	1 cut(s)	669
NlaIII	CATG	4 cut(s)	206, 373, 389, 1105
NlaIV	GGNNCC	3 cut(s)	20, 664, 841
NmeAIII	GCCGAG	1 cut(s)	541
NmuCI	GTSAC	3 cut(s)	737, 845, 1064
NruI	TCGCGA	1 cut(s)	169
NspI	RCATGY	1 cut(s)	206
PaqCI	CACCTGC	1 cut(s)	1085
PciI	ACATGT	1 cut(s)	202
PciSI	GCTCTTC	2 cut(s)	169, 252
PdiI	GCCGGC	1 cut(s)	671
PfeI	GAWTC	1 cut(s)	965
PkrI	GCNGC	2 cut(s)	453, 1038
PleI	GAGTC	1 cut(s)	120
PpsI	GAGTC	1 cut(s)	120
PpuMI	RGGWCCY	1 cut(s)	663
PscI	ACATGT	1 cut(s)	202
Psp124BI	GAGCTC	2 cut(s)	153, 164
Psp5II	RGGWCCY	1 cut(s)	663
PspEI	GGTNACC	1 cut(s)	775
PspN4I	GGNNCC	3 cut(s)	20, 664, 841
PspOMI	GGGCCC	1 cut(s)	18
PspPI	GGNCC	3 cut(s)	18, 19, 663
PspPPI	RGGWCCY	1 cut(s)	663
PsuI	RGATCY	1 cut(s)	730
RruI	TCGCGA	1 cut(s)	169
RsaI	GTAC	4 cut(s)	5, 128, 521, 746
RsaNI	GTAC	4 cut(s)	4, 127, 520, 745
SacI	GAGCTC	2 cut(s)	153, 164
SapI	GCTCTTC	2 cut(s)	169, 252
SaqAI	TTAA	4 cut(s)	347, 398, 423, 891
SatI	GCNGC	2 cut(s)	452, 1037
Sau3AI	GATC	2 cut(s)	730, 1098
Sau96I	GGNCC	3 cut(s)	18, 19, 663
SchI	GAGTC	1 cut(s)	121
SduI	GDGCHC	7 cut(s)	22, 44, 70, 153, 164, 297, 1093
SfcI	CTRYAG	1 cut(s)	906
SinI	GGWCC	1 cut(s)	663
SsiI	CCGC	2 cut(s)	38, 49
SspI	AATATT	2 cut(s)	447, 526
SspMI	CTAG	2 cut(s)	183, 978
SstI	GAGCTC	2 cut(s)	153, 164
StyI	CCWWGG	1 cut(s)	835
TaaI	ACNGT	5 cut(s)	8, 140, 851, 1070, 1088
TaiI	ACGT	1 cut(s)	645
TaqI	TCGA	3 cut(s)	158, 441, 931
TatI	WGTACW	1 cut(s)	519
TfiI	GAWTC	1 cut(s)	965
Tru1I	TTAA	4 cut(s)	347, 398, 423, 891
Tru9I	TTAA	4 cut(s)	347, 398, 423, 891
TscAI	CASTG	3 cut(s)	597, 885, 1073
TseFI	GTSAC	3 cut(s)	737, 845, 1064
TseI	GCWGC	2 cut(s)	451, 1036
Tsp45I	GTSAC	3 cut(s)	737, 845, 1064
TspDTI	ATGAA	6 cut(s)	191, 507, 547, 597, 966, 975
TspRI	CASTG	3 cut(s)	597, 885, 1073
VneI	GTGCAC	1 cut(s)	293
VpaK11BI	GGWCC	1 cut(s)	663
XapI	RAATTY	1 cut(s)	554
XceI	RCATGY	1 cut(s)	206
XspI	CTAG	2 cut(s)	183, 978
ZraI	GACGTC	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.