Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002655

Physical Location & Seq

Genomic Coordinates Reverse (-)

74282354 .. 74284110

Gene Structure 1757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00136600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTTTCCCACATTAGATGGACTGGAATTTCCAAGGAAGCTTCTTCAATCGACCAATTCTCAATCCTATAATTTAACTACGAGCATTGTTGGTTCAAGCGATTGTTGTAAAAATTGCTTCGAATGCTTACAGGATGATCTGATAGATTGGTACGTCACGCTTACTTTTCTAACGCGTTTGCTTGTCTACGTTACAATTTTAACGTTGCTCGTAGTTGTTGTATACATGATAATGAAGTACATAAGCGATTATGAAGACGGAAGGAGCAGTACAGAGGATTTTTTCGATTACACTGAAAGCAGCCCAGTATTACCGCCGGCAAAGTCAATCCCGGTAACATACGGGACTTGTGATCACTGGGATATCGAATCCGGAAATTGCAGCAGTACTAGCAGCATCACTAGCTCGTCCGAGGAGTTATACGATGGGAAAATATGTGTGATCTGCTACACTGGCCCAAGGAATTGTTTCTTAGTTCCTTGTGGTCACTGTGCTACATGTTATGATTGTGCACAAAGGATCTTTGAAGGGGAAAATAGGACATGTCCAATATGCAGAAGATTGATTCGGAAAGTAAGAAAGTTGTGCGTTGAATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

199

Amino Acids

22.51

Weight (kDa)

4.83

Isoelectric Point (pI)

53.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	144 - 192	7.3e-15	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	145 - 186	1e-06	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24204 AT4G24204 AT4G24204
fragaria_vesca	FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_2g33452 FvH4_2g33452 FvH4_2g33452
malus_domestica	MD08G1089900.v1.1 MD15G1074300.v1.1 MD15G1291000.v1.1
prunus_persica	Prupe.1G427200_v2.0.a1 Prupe.6G226000_v2.0.a1
pyrus_communis	pycom02g14610 pycom08g07330 pycom15g06950 pycom15g25460
rosa_chinensis	RchiOBHm_Chr2g0107111 RchiOBHm_Chr6g0309061
rosa_laevigata	RLG00000010593 RLG00000017555
rosa_multiflora	Rmu_sc0002945.1_g000008
rosa_roxburghii	Rroxscaffold_2G00136600
rosa_rugosa	Rorug02G0140300 Rorug06G0369400
rosa_samantha	Rh2AG191200 Rh2BG202900 Rh2CG196200 Rh2DG198400 Rh6AG482100 Rh6BG490900 Rh6CG496000 Rh6DG482600
rosa_wichuraiana	Rw2G015100 Rw6G041970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	186, 222
AccII	CGCG	1 cut(s)	175
AccIII	TCCGGA	1 cut(s)	371
AciI	CCGC	1 cut(s)	314
AclI	AACGTT	1 cut(s)	203
AclWI	GGATC	1 cut(s)	527
AcsI	RAATTY	1 cut(s)	26
AfaI	GTAC	4 cut(s)	152, 239, 271, 388
AflIII	ACRYGT	3 cut(s)	173, 497, 542
AgsI	TTSAA	4 cut(s)	47, 96, 527, 593
AluBI	AGCT	2 cut(s)	40, 405
AluI	AGCT	2 cut(s)	40, 405
Alw21I	GWGCWC	1 cut(s)	514
Alw44I	GTGCAC	1 cut(s)	510
AlwI	GGATC	1 cut(s)	527
Aor13HI	TCCGGA	1 cut(s)	371
AoxI	GGCC	1 cut(s)	454
ApaLI	GTGCAC	1 cut(s)	510
ApeKI	GCWGC	3 cut(s)	300, 381, 393
ApoI	RAATTY	1 cut(s)	26
Asp700I	GAANNNNTTC	1 cut(s)	467
AspS9I	GGNCC	1 cut(s)	455
AsuC2I	CCSGG	1 cut(s)	332
AsuII	TTCGAA	1 cut(s)	120
BaeGI	GKGCMC	1 cut(s)	514
BarI	GAAGNNNNNNTAC	2 cut(s)	253, 285
BbsI	GAAGAC	1 cut(s)	261
Bbv12I	GWGCWC	1 cut(s)	514
BbvI	GCAGC	3 cut(s)	312, 393, 405
BccI	CCATC	2 cut(s)	11, 419
BclI	TGATCA	1 cut(s)	352
BcnI	CCSGG	1 cut(s)	332
BfaI	CTAG	2 cut(s)	390, 402
BisI	GCNGC	3 cut(s)	301, 382, 394
BlsI	GCNGC	3 cut(s)	302, 383, 395
BmcAI	AGTACT	1 cut(s)	388
Bme1390I	CCNGG	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	455
BmrFI	CCNGG	1 cut(s)	332
BmrI	ACTGGG	2 cut(s)	299, 367
BmsI	GCATC	1 cut(s)	405
BmuI	ACTGGG	2 cut(s)	299, 367
BpiI	GAAGAC	1 cut(s)	261
Bpu14I	TTCGAA	1 cut(s)	120
BpuMI	CCSGG	1 cut(s)	332
BsaJI	CCNNGG	3 cut(s)	32, 411, 458
BsaWI	WCCGGW	1 cut(s)	371
Bse118I	RCCGGY	1 cut(s)	316
Bse1I	ACTGG	4 cut(s)	27, 305, 362, 457
BseAI	TCCGGA	1 cut(s)	371
BseDI	CCNNGG	3 cut(s)	32, 411, 458
BseGI	GGATG	1 cut(s)	139
BseNI	ACTGG	4 cut(s)	27, 305, 362, 457
BseRI	GAGGAG	1 cut(s)	428
BseSI	GKGCMC	1 cut(s)	514
BseXI	GCAGC	3 cut(s)	312, 393, 405
Bsh1236I	CGCG	1 cut(s)	175
BshFI	GGCC	1 cut(s)	456
BsiHKAI	GWGCWC	1 cut(s)	514
BsiSI	CCGG	3 cut(s)	317, 332, 372
BslFI	GGGAC	1 cut(s)	358
BsmFI	GGGAC	1 cut(s)	358
BsmI	GAATGC	1 cut(s)	128
BsnI	GGCC	1 cut(s)	456
Bsp119I	TTCGAA	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	514
Bsp13I	TCCGGA	1 cut(s)	371
Bsp143I	GATC	4 cut(s)	136, 352, 441, 519
BspACI	CCGC	1 cut(s)	314
BspANI	GGCC	1 cut(s)	456
BspEI	TCCGGA	1 cut(s)	371
BspFNI	CGCG	1 cut(s)	175
BspPI	GGATC	1 cut(s)	527
BspT104I	TTCGAA	1 cut(s)	120
BsrFI	RCCGGY	1 cut(s)	316
BsrI	ACTGG	4 cut(s)	27, 305, 362, 457
BssAI	RCCGGY	1 cut(s)	316
BssECI	CCNNGG	3 cut(s)	32, 411, 458
BssMI	GATC	4 cut(s)	136, 352, 441, 519
BssNAI	GTATAC	1 cut(s)	223
BssT1I	CCWWGG	2 cut(s)	32, 458
Bst1107I	GTATAC	1 cut(s)	223
Bst4CI	ACNGT	1 cut(s)	491
BstBI	TTCGAA	1 cut(s)	120
BstC8I	GCNNGC	1 cut(s)	318
BstDEI	CTNAG	1 cut(s)	472
BstF5I	GGATG	1 cut(s)	139
BstFNI	CGCG	1 cut(s)	175
BstKTI	GATC	4 cut(s)	139, 355, 444, 522
BstMBI	GATC	4 cut(s)	136, 352, 441, 519
BstMWI	GCNNNNNNNGC	4 cut(s)	123, 390, 402, 453
BstNSI	RCATGY	2 cut(s)	501, 546
BstSCI	CCNGG	1 cut(s)	330
BstSLI	GKGCMC	1 cut(s)	514
BstUI	CGCG	1 cut(s)	175
BstV1I	GCAGC	3 cut(s)	312, 393, 405
BstV2I	GAAGAC	1 cut(s)	261
BstX2I	RGATCY	1 cut(s)	519
BstYI	RGATCY	1 cut(s)	519
BstZ17I	GTATAC	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	456
BtsCI	GGATG	1 cut(s)	139
BtsIMutI	CAGTG	4 cut(s)	291, 355, 450, 487
Cac8I	GCNNGC	1 cut(s)	318
Cfr10I	RCCGGY	1 cut(s)	316
Cfr13I	GGNCC	1 cut(s)	455
Csp6I	GTAC	4 cut(s)	151, 238, 270, 387
CviAII	CATG	3 cut(s)	226, 498, 543
CviJI	RGCY	4 cut(s)	40, 303, 405, 456
CviKI_1	RGCY	4 cut(s)	40, 303, 405, 456
CviQI	GTAC	4 cut(s)	151, 238, 270, 387
DdeI	CTNAG	1 cut(s)	472
DpnI	GATC	4 cut(s)	138, 354, 443, 521
DpnII	GATC	4 cut(s)	136, 352, 441, 519
Eco130I	CCWWGG	2 cut(s)	32, 458
Eco32I	GATATC	1 cut(s)	364
EcoRV	GATATC	1 cut(s)	364
EcoT14I	CCWWGG	2 cut(s)	32, 458
ErhI	CCWWGG	2 cut(s)	32, 458
FaeI	CATG	3 cut(s)	229, 501, 546
FaqI	GGGAC	1 cut(s)	358
FatI	CATG	3 cut(s)	225, 497, 542
FbaI	TGATCA	1 cut(s)	352
FblI	GTMKAC	2 cut(s)	186, 222
Fnu4HI	GCNGC	3 cut(s)	301, 382, 394
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	3 cut(s)	301, 382, 394
FspBI	CTAG	2 cut(s)	390, 402
GluI	GCNGC	3 cut(s)	301, 382, 394
HaeIII	GGCC	1 cut(s)	456
HapII	CCGG	3 cut(s)	317, 332, 372
Hin1II	CATG	3 cut(s)	229, 501, 546
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	3 cut(s)	368, 565, 593
HpaII	CCGG	3 cut(s)	317, 332, 372
Hpy166II	GTNNAC	3 cut(s)	187, 223, 512
Hpy188I	TCNGA	3 cut(s)	141, 412, 570
Hpy188III	TCNNGA	1 cut(s)	372
Hpy8I	GTNNAC	3 cut(s)	187, 223, 512
HpyAV	CCTTC	2 cut(s)	255, 521
HpyCH4III	ACNGT	1 cut(s)	491
HpyCH4IV	ACGT	3 cut(s)	153, 189, 203
HpyCH4V	TGCA	3 cut(s)	381, 512, 555
HpyF10VI	GCNNNNNNNGC	4 cut(s)	123, 390, 402, 453
HpyF3I	CTNAG	1 cut(s)	472
HpySE526I	ACGT	3 cut(s)	153, 189, 203
Hsp92II	CATG	3 cut(s)	229, 501, 546
Kpn2I	TCCGGA	1 cut(s)	371
KroI	GCCGGC	1 cut(s)	316
KroNI	GCCGGC	1 cut(s)	318
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	4 cut(s)	136, 352, 441, 519
LmnI	GCTCC	1 cut(s)	264
LpnPI	CCDG	8 cut(s)	8, 116, 318, 330, 343, 345, 385, 438
Lsp1109I	GCAGC	3 cut(s)	312, 393, 405
LweI	GCATC	1 cut(s)	405
MaeI	CTAG	2 cut(s)	390, 402
MaeII	ACGT	3 cut(s)	153, 189, 203
MaeIII	GTNAC	4 cut(s)	154, 190, 334, 485
MalI	GATC	4 cut(s)	138, 354, 443, 521
MboI	GATC	4 cut(s)	136, 352, 441, 519
MboII	GAAGA	3 cut(s)	35, 266, 570
MflI	RGATCY	1 cut(s)	519
MhlI	GDGCHC	1 cut(s)	514
MluCI	AATT	7 cut(s)	26, 55, 70, 112, 195, 376, 463
MluI	ACGCGT	1 cut(s)	173
MnlI	CCTC	2 cut(s)	268, 406
MroI	TCCGGA	1 cut(s)	371
MroNI	GCCGGC	1 cut(s)	316
MroXI	GAANNNNTTC	1 cut(s)	467
MseI	TTAA	2 cut(s)	74, 200
MslI	CAYNNNNRTG	1 cut(s)	230
MspI	CCGG	3 cut(s)	317, 332, 372
MspR9I	CCNGG	1 cut(s)	332
Mva1269I	GAATGC	1 cut(s)	128
MvnI	CGCG	1 cut(s)	175
MwoI	GCNNNNNNNGC	4 cut(s)	123, 390, 402, 453
NaeI	GCCGGC	1 cut(s)	318
NciI	CCSGG	1 cut(s)	332
NdeII	GATC	4 cut(s)	136, 352, 441, 519
NgoMIV	GCCGGC	1 cut(s)	316
NlaIII	CATG	3 cut(s)	229, 501, 546
NmuCI	GTSAC	2 cut(s)	154, 485
NspI	RCATGY	2 cut(s)	501, 546
NspV	TTCGAA	1 cut(s)	120
PciI	ACATGT	2 cut(s)	497, 542
PctI	GAATGC	1 cut(s)	128
PdiI	GCCGGC	1 cut(s)	318
PdmI	GAANNNNTTC	1 cut(s)	467
PfeI	GAWTC	3 cut(s)	368, 565, 593
PkrI	GCNGC	3 cut(s)	302, 383, 395
PscI	ACATGT	2 cut(s)	497, 542
Psp1406I	AACGTT	1 cut(s)	203
PspPI	GGNCC	1 cut(s)	455
PsuI	RGATCY	1 cut(s)	519
RsaI	GTAC	4 cut(s)	152, 239, 271, 388
RsaNI	GTAC	4 cut(s)	151, 238, 270, 387
RseI	CAYNNNNRTG	1 cut(s)	230
SaqAI	TTAA	2 cut(s)	74, 200
SatI	GCNGC	3 cut(s)	301, 382, 394
Sau3AI	GATC	4 cut(s)	136, 352, 441, 519
Sau96I	GGNCC	1 cut(s)	455
ScaI	AGTACT	1 cut(s)	388
ScrFI	CCNGG	1 cut(s)	332
SduI	GDGCHC	1 cut(s)	514
SetI	ASST	5 cut(s)	42, 156, 192, 206, 407
SfaNI	GCATC	1 cut(s)	405
SfuI	TTCGAA	1 cut(s)	120
SmiMI	CAYNNNNRTG	1 cut(s)	230
Sse9I	AATT	7 cut(s)	26, 55, 70, 112, 195, 376, 463
SsiI	CCGC	1 cut(s)	314
SspMI	CTAG	2 cut(s)	390, 402
StyD4I	CCNGG	1 cut(s)	330
StyI	CCWWGG	2 cut(s)	32, 458
TaaI	ACNGT	1 cut(s)	491
TaiI	ACGT	3 cut(s)	156, 192, 206
TaqI	TCGA	4 cut(s)	50, 120, 285, 366
TasI	AATT	7 cut(s)	26, 55, 70, 112, 195, 376, 463
TatI	WGTACW	3 cut(s)	237, 269, 386
TfiI	GAWTC	3 cut(s)	368, 565, 593
Tru1I	TTAA	2 cut(s)	74, 200
Tru9I	TTAA	2 cut(s)	74, 200
TscAI	CASTG	4 cut(s)	298, 362, 457, 494
TseFI	GTSAC	2 cut(s)	154, 485
TseI	GCWGC	3 cut(s)	300, 381, 393
Tsp45I	GTSAC	2 cut(s)	154, 485
TspDTI	ATGAA	2 cut(s)	248, 267
TspGWI	ACGGA	1 cut(s)	273
TspRI	CASTG	4 cut(s)	298, 362, 457, 494
VneI	GTGCAC	1 cut(s)	510
XapI	RAATTY	1 cut(s)	26
XceI	RCATGY	2 cut(s)	501, 546
XmiI	GTMKAC	2 cut(s)	186, 222
XmnI	GAANNNNTTC	1 cut(s)	467
XspI	CTAG	2 cut(s)	390, 402
ZrmI	AGTACT	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.