Zinc finger, C3HC4 type (RING finger)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G24204 AT4G24204 AT4G24204 |
| fragaria_vesca | FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_2g33452 FvH4_2g33452 FvH4_2g33452 |
| malus_domestica | MD08G1089900.v1.1 MD15G1074300.v1.1 MD15G1291000.v1.1 |
| prunus_persica | Prupe.1G427200_v2.0.a1 Prupe.6G226000_v2.0.a1 |
| pyrus_communis | pycom02g14610 pycom08g07330 pycom15g06950 pycom15g25460 |
| rosa_chinensis | RchiOBHm_Chr2g0107111 RchiOBHm_Chr6g0309061 |
| rosa_laevigata | RLG00000010593 RLG00000017555 |
| rosa_multiflora | Rmu_sc0002945.1_g000008 |
| rosa_roxburghii | Rroxscaffold_2G00136600 |
| rosa_rugosa | Rorug02G0140300 Rorug06G0369400 |
| rosa_samantha | Rh2AG191200 Rh2BG202900 Rh2CG196200 Rh2DG198400 Rh6AG482100 Rh6BG490900 Rh6CG496000 Rh6DG482600 |
| rosa_wichuraiana | Rw2G015100 Rw6G041970 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 129, 165 |
| AccII | CGCG | 1 cut(s) | 118 |
| AccIII | TCCGGA | 1 cut(s) | 314 |
| AciI | CCGC | 1 cut(s) | 257 |
| AclI | AACGTT | 1 cut(s) | 146 |
| AclWI | GGATC | 1 cut(s) | 470 |
| AfaI | GTAC | 5 cut(s) | 95, 182, 214, 284, 331 |
| AflIII | ACRYGT | 3 cut(s) | 116, 440, 485 |
| AgsI | TTSAA | 3 cut(s) | 69, 470, 536 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 398, 430 |
| AluBI | AGCT | 2 cut(s) | 55, 348 |
| AluI | AGCT | 2 cut(s) | 55, 348 |
| Alw21I | GWGCWC | 1 cut(s) | 457 |
| Alw44I | GTGCAC | 1 cut(s) | 453 |
| AlwI | GGATC | 1 cut(s) | 470 |
| Aor13HI | TCCGGA | 1 cut(s) | 314 |
| ApaLI | GTGCAC | 1 cut(s) | 453 |
| ApeKI | GCWGC | 3 cut(s) | 243, 324, 336 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 410 |
| AsuC2I | CCSGG | 1 cut(s) | 275 |
| BaeGI | GKGCMC | 2 cut(s) | 26, 457 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 196, 228 |
| BbsI | GAAGAC | 1 cut(s) | 204 |
| Bbv12I | GWGCWC | 1 cut(s) | 457 |
| BbvI | GCAGC | 3 cut(s) | 255, 336, 348 |
| BccI | CCATC | 1 cut(s) | 362 |
| BclI | TGATCA | 1 cut(s) | 295 |
| BcnI | CCSGG | 1 cut(s) | 275 |
| BfaI | CTAG | 2 cut(s) | 333, 345 |
| BisI | GCNGC | 3 cut(s) | 244, 325, 337 |
| BlsI | GCNGC | 3 cut(s) | 245, 326, 338 |
| BmcAI | AGTACT | 1 cut(s) | 331 |
| Bme1390I | CCNGG | 1 cut(s) | 275 |
| BmiI | GGNNCC | 1 cut(s) | 420 |
| BmrFI | CCNGG | 1 cut(s) | 275 |
| BmrI | ACTGGG | 2 cut(s) | 242, 310 |
| BmsI | GCATC | 1 cut(s) | 348 |
| BmuI | ACTGGG | 2 cut(s) | 242, 310 |
| BpiI | GAAGAC | 1 cut(s) | 204 |
| BpuMI | CCSGG | 1 cut(s) | 275 |
| BsaBI | GATNNNNATC | 1 cut(s) | 78 |
| BsaJI | CCNNGG | 2 cut(s) | 354, 401 |
| BsaWI | WCCGGW | 1 cut(s) | 314 |
| Bse118I | RCCGGY | 1 cut(s) | 259 |
| Bse1I | ACTGG | 2 cut(s) | 248, 305 |
| Bse8I | GATNNNNATC | 1 cut(s) | 78 |
| BseAI | TCCGGA | 1 cut(s) | 314 |
| BseDI | CCNNGG | 2 cut(s) | 354, 401 |
| BseGI | GGATG | 1 cut(s) | 226 |
| BseJI | GATNNNNATC | 1 cut(s) | 78 |
| BseNI | ACTGG | 2 cut(s) | 248, 305 |
| BseRI | GAGGAG | 1 cut(s) | 371 |
| BseSI | GKGCMC | 2 cut(s) | 26, 457 |
| BseXI | GCAGC | 3 cut(s) | 255, 336, 348 |
| Bsh1236I | CGCG | 1 cut(s) | 118 |
| BsiHKAI | GWGCWC | 1 cut(s) | 457 |
| BsiSI | CCGG | 3 cut(s) | 260, 275, 315 |
| BsiWI | CGTACG | 1 cut(s) | 282 |
| BslFI | GGGAC | 1 cut(s) | 301 |
| BsmFI | GGGAC | 1 cut(s) | 301 |
| Bsp1286I | GDGCHC | 2 cut(s) | 26, 457 |
| Bsp13I | TCCGGA | 1 cut(s) | 314 |
| Bsp143I | GATC | 4 cut(s) | 79, 295, 384, 462 |
| BspACI | CCGC | 1 cut(s) | 257 |
| BspEI | TCCGGA | 1 cut(s) | 314 |
| BspFNI | CGCG | 1 cut(s) | 118 |
| BspLI | GGNNCC | 1 cut(s) | 420 |
| BspPI | GGATC | 1 cut(s) | 470 |
| BsrFI | RCCGGY | 1 cut(s) | 259 |
| BsrI | ACTGG | 2 cut(s) | 248, 305 |
| BssAI | RCCGGY | 1 cut(s) | 259 |
| BssECI | CCNNGG | 2 cut(s) | 354, 401 |
| BssMI | GATC | 4 cut(s) | 79, 295, 384, 462 |
| BssNAI | GTATAC | 1 cut(s) | 166 |
| BssT1I | CCWWGG | 1 cut(s) | 401 |
| Bst1107I | GTATAC | 1 cut(s) | 166 |
| Bst4CI | ACNGT | 2 cut(s) | 38, 434 |
| BstC8I | GCNNGC | 1 cut(s) | 261 |
| BstF5I | GGATG | 1 cut(s) | 226 |
| BstFNI | CGCG | 1 cut(s) | 118 |
| BstKTI | GATC | 4 cut(s) | 82, 298, 387, 465 |
| BstMBI | GATC | 4 cut(s) | 79, 295, 384, 462 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 333, 345 |
| BstNSI | RCATGY | 2 cut(s) | 444, 489 |
| BstSCI | CCNGG | 1 cut(s) | 273 |
| BstSLI | GKGCMC | 2 cut(s) | 26, 457 |
| BstUI | CGCG | 1 cut(s) | 118 |
| BstV1I | GCAGC | 3 cut(s) | 255, 336, 348 |
| BstV2I | GAAGAC | 1 cut(s) | 204 |
| BstX2I | RGATCY | 1 cut(s) | 462 |
| BstYI | RGATCY | 1 cut(s) | 462 |
| BstZ17I | GTATAC | 1 cut(s) | 166 |
| BtgZI | GCGATG | 1 cut(s) | 87 |
| BtsCI | GGATG | 1 cut(s) | 226 |
| BtsIMutI | CAGTG | 5 cut(s) | 43, 234, 298, 393, 430 |
| Cac8I | GCNNGC | 1 cut(s) | 261 |
| Cfr10I | RCCGGY | 1 cut(s) | 259 |
| Csp6I | GTAC | 5 cut(s) | 94, 181, 213, 283, 330 |
| CviAII | CATG | 3 cut(s) | 169, 441, 486 |
| CviJI | RGCY | 3 cut(s) | 55, 246, 348 |
| CviKI_1 | RGCY | 3 cut(s) | 55, 246, 348 |
| CviQI | GTAC | 5 cut(s) | 94, 181, 213, 283, 330 |
| DpnI | GATC | 4 cut(s) | 81, 297, 386, 464 |
| DpnII | GATC | 4 cut(s) | 79, 295, 384, 462 |
| Eco130I | CCWWGG | 1 cut(s) | 401 |
| Eco32I | GATATC | 1 cut(s) | 307 |
| EcoRV | GATATC | 1 cut(s) | 307 |
| EcoT14I | CCWWGG | 1 cut(s) | 401 |
| ErhI | CCWWGG | 1 cut(s) | 401 |
| FaeI | CATG | 3 cut(s) | 172, 444, 489 |
| FaqI | GGGAC | 1 cut(s) | 301 |
| FatI | CATG | 3 cut(s) | 168, 440, 485 |
| FbaI | TGATCA | 1 cut(s) | 295 |
| FblI | GTMKAC | 2 cut(s) | 129, 165 |
| Fnu4HI | GCNGC | 3 cut(s) | 244, 325, 337 |
| FokI | GGATG | 1 cut(s) | 233 |
| Fsp4HI | GCNGC | 3 cut(s) | 244, 325, 337 |
| FspBI | CTAG | 2 cut(s) | 333, 345 |
| GluI | GCNGC | 3 cut(s) | 244, 325, 337 |
| HapII | CCGG | 3 cut(s) | 260, 275, 315 |
| Hin1II | CATG | 3 cut(s) | 172, 444, 489 |
| HinfI | GANTC | 2 cut(s) | 311, 536 |
| HpaII | CCGG | 3 cut(s) | 260, 275, 315 |
| Hpy166II | GTNNAC | 3 cut(s) | 130, 166, 455 |
| Hpy188I | TCNGA | 3 cut(s) | 52, 84, 355 |
| Hpy188III | TCNNGA | 1 cut(s) | 315 |
| Hpy8I | GTNNAC | 3 cut(s) | 130, 166, 455 |
| HpyAV | CCTTC | 2 cut(s) | 198, 464 |
| HpyCH4III | ACNGT | 2 cut(s) | 38, 434 |
| HpyCH4IV | ACGT | 4 cut(s) | 96, 132, 146, 281 |
| HpyCH4V | TGCA | 3 cut(s) | 324, 455, 498 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 333, 345 |
| HpySE526I | ACGT | 4 cut(s) | 96, 132, 146, 281 |
| Hsp92II | CATG | 3 cut(s) | 172, 444, 489 |
| Kpn2I | TCCGGA | 1 cut(s) | 314 |
| KroI | GCCGGC | 1 cut(s) | 259 |
| KroNI | GCCGGC | 1 cut(s) | 261 |
| Ksp22I | TGATCA | 1 cut(s) | 295 |
| Kzo9I | GATC | 4 cut(s) | 79, 295, 384, 462 |
| LmnI | GCTCC | 1 cut(s) | 207 |
| LpnPI | CCDG | 5 cut(s) | 261, 273, 286, 288, 328 |
| Lsp1109I | GCAGC | 3 cut(s) | 255, 336, 348 |
| LweI | GCATC | 1 cut(s) | 348 |
| MaeI | CTAG | 2 cut(s) | 333, 345 |
| MaeII | ACGT | 4 cut(s) | 96, 132, 146, 281 |
| MaeIII | GTNAC | 4 cut(s) | 97, 133, 277, 428 |
| MalI | GATC | 4 cut(s) | 81, 297, 386, 464 |
| MboI | GATC | 4 cut(s) | 79, 295, 384, 462 |
| MboII | GAAGA | 2 cut(s) | 209, 513 |
| MflI | RGATCY | 1 cut(s) | 462 |
| MhlI | GDGCHC | 2 cut(s) | 26, 457 |
| MluCI | AATT | 3 cut(s) | 138, 319, 406 |
| MluI | ACGCGT | 1 cut(s) | 116 |
| MnlI | CCTC | 4 cut(s) | 13, 35, 211, 349 |
| MroI | TCCGGA | 1 cut(s) | 314 |
| MroNI | GCCGGC | 1 cut(s) | 259 |
| MroXI | GAANNNNTTC | 1 cut(s) | 410 |
| MseI | TTAA | 1 cut(s) | 143 |
| MslI | CAYNNNNRTG | 1 cut(s) | 173 |
| MspI | CCGG | 3 cut(s) | 260, 275, 315 |
| MspR9I | CCNGG | 1 cut(s) | 275 |
| MvnI | CGCG | 1 cut(s) | 118 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 333, 345 |
| NaeI | GCCGGC | 1 cut(s) | 261 |
| NciI | CCSGG | 1 cut(s) | 275 |
| NdeII | GATC | 4 cut(s) | 79, 295, 384, 462 |
| NgoMIV | GCCGGC | 1 cut(s) | 259 |
| NlaIII | CATG | 3 cut(s) | 172, 444, 489 |
| NlaIV | GGNNCC | 1 cut(s) | 420 |
| NmuCI | GTSAC | 2 cut(s) | 97, 428 |
| NspI | RCATGY | 2 cut(s) | 444, 489 |
| PciI | ACATGT | 2 cut(s) | 440, 485 |
| PdiI | GCCGGC | 1 cut(s) | 261 |
| PdmI | GAANNNNTTC | 1 cut(s) | 410 |
| PfeI | GAWTC | 2 cut(s) | 311, 536 |
| Pfl23II | CGTACG | 1 cut(s) | 282 |
| PkrI | GCNGC | 3 cut(s) | 245, 326, 338 |
| PscI | ACATGT | 2 cut(s) | 440, 485 |
| Psp1406I | AACGTT | 1 cut(s) | 146 |
| PspLI | CGTACG | 1 cut(s) | 282 |
| PspN4I | GGNNCC | 1 cut(s) | 420 |
| PsuI | RGATCY | 1 cut(s) | 462 |
| RsaI | GTAC | 5 cut(s) | 95, 182, 214, 284, 331 |
| RsaNI | GTAC | 5 cut(s) | 94, 181, 213, 283, 330 |
| RseI | CAYNNNNRTG | 1 cut(s) | 173 |
| SaqAI | TTAA | 1 cut(s) | 143 |
| SatI | GCNGC | 3 cut(s) | 244, 325, 337 |
| Sau3AI | GATC | 4 cut(s) | 79, 295, 384, 462 |
| ScaI | AGTACT | 1 cut(s) | 331 |
| ScrFI | CCNGG | 1 cut(s) | 275 |
| SduI | GDGCHC | 2 cut(s) | 26, 457 |
| SetI | ASST | 7 cut(s) | 14, 57, 99, 135, 149, 284, 350 |
| SfaNI | GCATC | 1 cut(s) | 348 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 173 |
| SmlI | CTYRAG | 1 cut(s) | 7 |
| SmoI | CTYRAG | 1 cut(s) | 7 |
| Sse9I | AATT | 3 cut(s) | 138, 319, 406 |
| SsiI | CCGC | 1 cut(s) | 257 |
| SspMI | CTAG | 2 cut(s) | 333, 345 |
| StyD4I | CCNGG | 1 cut(s) | 273 |
| StyI | CCWWGG | 1 cut(s) | 401 |
| TaaI | ACNGT | 2 cut(s) | 38, 434 |
| TaiI | ACGT | 4 cut(s) | 99, 135, 149, 284 |
| TaqI | TCGA | 2 cut(s) | 228, 309 |
| TasI | AATT | 3 cut(s) | 138, 319, 406 |
| TatI | WGTACW | 3 cut(s) | 180, 212, 329 |
| TfiI | GAWTC | 2 cut(s) | 311, 536 |
| Tru1I | TTAA | 1 cut(s) | 143 |
| Tru9I | TTAA | 1 cut(s) | 143 |
| TscAI | CASTG | 5 cut(s) | 43, 241, 305, 400, 437 |
| TseFI | GTSAC | 2 cut(s) | 97, 428 |
| TseI | GCWGC | 3 cut(s) | 243, 324, 336 |
| Tsp45I | GTSAC | 2 cut(s) | 97, 428 |
| TspDTI | ATGAA | 3 cut(s) | 17, 191, 210 |
| TspGWI | ACGGA | 1 cut(s) | 216 |
| TspRI | CASTG | 5 cut(s) | 43, 241, 305, 400, 437 |
| VneI | GTGCAC | 1 cut(s) | 453 |
| XceI | RCATGY | 2 cut(s) | 444, 489 |
| XmiI | GTMKAC | 2 cut(s) | 129, 165 |
| XmnI | GAANNNNTTC | 1 cut(s) | 410 |
| XspI | CTAG | 2 cut(s) | 333, 345 |
| ZrmI | AGTACT | 1 cut(s) | 331 |