Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002655

Physical Location & Seq

Genomic Coordinates Forward (+)

26915456 .. 26917468

Gene Structure 2013 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1291000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTCTTCTATAATAGATGGACTGACAATTCATCGGAAGCTTCAATCGATCAACTCTCAGCCTTCCAATTTAACGAGTATTACCTATGACGATGATTTGGTAGAATGGTGCGTCACGCTTACTTTTCTAGTGCGTTTGATTGCGTACATTGCAATTTTAACACTGCTTGTGATTGTTGCATTCATGATACTGAAATACATAAACGAATACGAGGAGACGAGCGTAGAGGATGTAGGAAACAGTGCTGAAACCGACCCATTACAGCCGGCAGGAAAGAGAATGCCATCGACATATGGGACATGTGACGAGTGGGATATAGAATCAGGAAATTGCAGCAGCAGCAGTAGTAATAGCAGCAATGCCGTAATTACGAGCTCCTCCGAGGACTTGTATGATGGGAAAATATGTGTGATTTGCTACACCGAGCAGAGGGATTGTTTTTTGGTTCCTTGTGGCCATTGTGCTACCTGCTATGATTGCGCACAAAGGATTTTTTATGGGGAGACCAAGACATGTCCGATATGTCGAAGATTCATTCGGAAAGTAAGAAGATTATTTGCTGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4792 DUF4793 zf-C3HC4_3

Protein Analysis

189

Amino Acids

21.05

Weight (kDa)

4.81

Isoelectric Point (pI)

54.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	134 - 182	3.7e-15	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	135 - 176	2.1e-06	Ring finger domain
Prok-RING_4	PF14447	136 - 179	8.7e-06	Prokaryotic RING finger family 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24204 AT4G24204 AT4G24204
fragaria_vesca	FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_2g33452 FvH4_2g33452 FvH4_2g33452
malus_domestica	MD08G1089900.v1.1 MD15G1074300.v1.1 MD15G1291000.v1.1
prunus_persica	Prupe.1G427200_v2.0.a1 Prupe.6G226000_v2.0.a1
pyrus_communis	pycom02g14610 pycom08g07330 pycom15g06950 pycom15g25460
rosa_chinensis	RchiOBHm_Chr2g0107111 RchiOBHm_Chr6g0309061
rosa_laevigata	RLG00000010593 RLG00000017555
rosa_multiflora	Rmu_sc0002945.1_g000008
rosa_roxburghii	Rroxscaffold_2G00136600
rosa_rugosa	Rorug02G0140300 Rorug06G0369400
rosa_samantha	Rh2AG191200 Rh2BG202900 Rh2CG196200 Rh2DG198400 Rh6AG482100 Rh6BG490900 Rh6CG496000 Rh6DG482600
rosa_wichuraiana	Rw2G015100 Rw6G041970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	481
Acc36I	ACCTGC	1 cut(s)	476
AcoI	YGGCCR	1 cut(s)	454
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	1 cut(s)	429
AflIII	ACRYGT	2 cut(s)	299, 512
AgsI	TTSAA	1 cut(s)	44
AluBI	AGCT	2 cut(s)	40, 375
AluI	AGCT	2 cut(s)	40, 375
Alw21I	GWGCWC	1 cut(s)	377
Alw26I	GTCTC	2 cut(s)	209, 497
AoxI	GGCC	1 cut(s)	454
ApeKI	GCWGC	5 cut(s)	333, 336, 339, 354, 560
AspLEI	GCGC	1 cut(s)	482
BalI	TGGCCA	1 cut(s)	456
BanII	GRGCYC	1 cut(s)	377
Bbv12I	GWGCWC	1 cut(s)	377
BbvI	GCAGC	5 cut(s)	345, 348, 351, 366, 547
BccI	CCATC	3 cut(s)	11, 292, 389
BceAI	ACGGC	1 cut(s)	347
BcoDI	GTCTC	2 cut(s)	209, 497
BfaI	CTAG	1 cut(s)	128
BfuAI	ACCTGC	1 cut(s)	476
BisI	GCNGC	5 cut(s)	334, 337, 340, 355, 561
BlsI	GCNGC	5 cut(s)	335, 338, 341, 356, 562
BmiI	GGNNCC	1 cut(s)	447
Bsa29I	ATCGAT	1 cut(s)	47
BsaI	GGTCTC	1 cut(s)	497
BsaJI	CCNNGG	1 cut(s)	381
Bsc4I	CCNNNNNNNGG	1 cut(s)	429
Bse118I	RCCGGY	1 cut(s)	265
Bse3DI	GCAATG	2 cut(s)	147, 364
BseCI	ATCGAT	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	381
BseGI	GGATG	1 cut(s)	235
BseLI	CCNNNNNNNGG	1 cut(s)	429
BseMI	GCAATG	2 cut(s)	147, 364
BseMII	CTCAG	1 cut(s)	71
BseRI	GAGGAG	2 cut(s)	227, 367
BseXI	GCAGC	5 cut(s)	345, 348, 351, 366, 547
BshFI	GGCC	1 cut(s)	456
BshVI	ATCGAT	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	377
BsiSI	CCGG	1 cut(s)	266
BslFI	GGGAC	1 cut(s)	310
BslI	CCNNNNNNNGG	1 cut(s)	429
BsmAI	GTCTC	2 cut(s)	209, 497
BsmBI	CGTCTC	1 cut(s)	209
BsmFI	GGGAC	1 cut(s)	310
BsmI	GAATGC	2 cut(s)	179, 285
BsnI	GGCC	1 cut(s)	456
Bso31I	GGTCTC	1 cut(s)	497
Bsp1286I	GDGCHC	1 cut(s)	377
Bsp143I	GATC	1 cut(s)	48
BspANI	GGCC	1 cut(s)	456
BspCNI	CTCAG	1 cut(s)	70
BspDI	ATCGAT	1 cut(s)	47
BspHI	TCATGA	1 cut(s)	183
BspLI	GGNNCC	1 cut(s)	447
BspMI	ACCTGC	1 cut(s)	476
BspTNI	GGTCTC	1 cut(s)	497
BsrDI	GCAATG	2 cut(s)	147, 364
BsrFI	RCCGGY	1 cut(s)	265
BssAI	RCCGGY	1 cut(s)	265
BssECI	CCNNGG	1 cut(s)	381
BssMI	GATC	1 cut(s)	48
Bst4CI	ACNGT	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	235
BstHHI	GCGC	1 cut(s)	482
BstKTI	GATC	1 cut(s)	51
BstMAI	GTCTC	2 cut(s)	209, 497
BstMBI	GATC	1 cut(s)	48
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 339, 477
BstNSI	RCATGY	2 cut(s)	303, 516
BstV1I	GCAGC	5 cut(s)	345, 348, 351, 366, 547
Bsu15I	ATCGAT	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	456
BsuTUI	ATCGAT	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	235
BtsI	GCAGTG	1 cut(s)	161
BtsIMutI	CAGTG	2 cut(s)	161, 247
BveI	ACCTGC	1 cut(s)	476
Cac8I	GCNNGC	1 cut(s)	267
CciI	TCATGA	1 cut(s)	183
CfoI	GCGC	1 cut(s)	482
Cfr10I	RCCGGY	1 cut(s)	265
ClaI	ATCGAT	1 cut(s)	47
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	3 cut(s)	184, 300, 513
CviJI	RGCY	5 cut(s)	40, 61, 265, 375, 456
CviKI_1	RGCY	5 cut(s)	40, 61, 265, 375, 456
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
EaeI	YGGCCR	1 cut(s)	454
Ecl136II	GAGCTC	1 cut(s)	375
Eco24I	GRGCYC	1 cut(s)	377
Eco31I	GGTCTC	1 cut(s)	497
Eco53kI	GAGCTC	1 cut(s)	375
EcoICRI	GAGCTC	1 cut(s)	375
EcoT38I	GRGCYC	1 cut(s)	377
Esp3I	CGTCTC	1 cut(s)	209
FaeI	CATG	3 cut(s)	187, 303, 516
FaqI	GGGAC	1 cut(s)	310
FatI	CATG	3 cut(s)	183, 299, 512
FauNDI	CATATG	1 cut(s)	292
Fnu4HI	GCNGC	5 cut(s)	334, 337, 340, 355, 561
FokI	GGATG	1 cut(s)	242
FriOI	GRGCYC	1 cut(s)	377
Fsp4HI	GCNGC	5 cut(s)	334, 337, 340, 355, 561
FspBI	CTAG	1 cut(s)	128
FspI	TGCGCA	1 cut(s)	481
GlaI	GCGC	1 cut(s)	481
GluI	GCNGC	5 cut(s)	334, 337, 340, 355, 561
HaeIII	GGCC	1 cut(s)	456
HapII	CCGG	1 cut(s)	266
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	1 cut(s)	482
Hin1II	CATG	3 cut(s)	187, 303, 516
Hin6I	GCGC	1 cut(s)	480
HinP1I	GCGC	1 cut(s)	480
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	2 cut(s)	320, 531
HpaII	CCGG	1 cut(s)	266
Hpy188I	TCNGA	4 cut(s)	36, 382, 519, 540
Hpy188III	TCNNGA	2 cut(s)	184, 324
HpyAV	CCTTC	1 cut(s)	72
HpyCH4III	ACNGT	1 cut(s)	242
HpyCH4V	TGCA	3 cut(s)	152, 179, 333
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 339, 477
HpyF3I	CTNAG	1 cut(s)	57
Hsp92II	CATG	3 cut(s)	187, 303, 516
HspAI	GCGC	1 cut(s)	480
KroI	GCCGGC	1 cut(s)	265
KroNI	GCCGGC	1 cut(s)	267
Kzo9I	GATC	1 cut(s)	48
LmnI	GCTCC	1 cut(s)	380
LpnPI	CCDG	4 cut(s)	255, 279, 309, 481
Lsp1109I	GCAGC	5 cut(s)	345, 348, 351, 366, 547
MaeI	CTAG	1 cut(s)	128
MaeIII	GTNAC	2 cut(s)	112, 302
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
MboII	GAAGA	2 cut(s)	540, 561
MhlI	GDGCHC	1 cut(s)	377
MlsI	TGGCCA	1 cut(s)	456
MluCI	AATT	5 cut(s)	27, 67, 153, 328, 366
MluNI	TGGCCA	1 cut(s)	456
MnlI	CCTC	5 cut(s)	205, 220, 376, 388, 423
Mox20I	TGGCCA	1 cut(s)	456
MroNI	GCCGGC	1 cut(s)	265
MscI	TGGCCA	1 cut(s)	456
MseI	TTAA	2 cut(s)	71, 158
Msp20I	TGGCCA	1 cut(s)	456
MspI	CCGG	1 cut(s)	266
Mva1269I	GAATGC	2 cut(s)	179, 285
MwoI	GCNNNNNNNGC	3 cut(s)	149, 339, 477
NaeI	GCCGGC	1 cut(s)	267
NdeI	CATATG	1 cut(s)	292
NdeII	GATC	1 cut(s)	48
NgoMIV	GCCGGC	1 cut(s)	265
NlaIII	CATG	3 cut(s)	187, 303, 516
NlaIV	GGNNCC	1 cut(s)	447
NmuCI	GTSAC	2 cut(s)	112, 302
NsbI	TGCGCA	1 cut(s)	481
NspI	RCATGY	2 cut(s)	303, 516
PagI	TCATGA	1 cut(s)	183
PciI	ACATGT	2 cut(s)	299, 512
PctI	GAATGC	2 cut(s)	179, 285
PdiI	GCCGGC	1 cut(s)	267
PfeI	GAWTC	2 cut(s)	320, 531
PkrI	GCNGC	5 cut(s)	335, 338, 341, 356, 562
PscI	ACATGT	2 cut(s)	299, 512
Psp124BI	GAGCTC	1 cut(s)	377
PspN4I	GGNNCC	1 cut(s)	447
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SacI	GAGCTC	1 cut(s)	377
SaqAI	TTAA	2 cut(s)	71, 158
SatI	GCNGC	5 cut(s)	334, 337, 340, 355, 561
Sau3AI	GATC	1 cut(s)	48
SduI	GDGCHC	1 cut(s)	377
SetI	ASST	4 cut(s)	42, 86, 377, 470
Sse9I	AATT	5 cut(s)	27, 67, 153, 328, 366
SspMI	CTAG	1 cut(s)	128
SstI	GAGCTC	1 cut(s)	377
TaaI	ACNGT	1 cut(s)	242
TaqI	TCGA	3 cut(s)	47, 287, 526
TasI	AATT	5 cut(s)	27, 67, 153, 328, 366
TfiI	GAWTC	2 cut(s)	320, 531
Tru1I	TTAA	2 cut(s)	71, 158
Tru9I	TTAA	2 cut(s)	71, 158
TscAI	CASTG	2 cut(s)	168, 247
TseFI	GTSAC	2 cut(s)	112, 302
TseI	GCWGC	5 cut(s)	333, 336, 339, 354, 560
Tsp45I	GTSAC	2 cut(s)	112, 302
TspDTI	ATGAA	3 cut(s)	20, 172, 523
TspRI	CASTG	2 cut(s)	168, 247
XceI	RCATGY	2 cut(s)	303, 516
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.