Rh6AG482100

Domain of unknown function (DUF4793)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002655
Physical Location & Seq
Forward (+)
66252119 .. 66253979
1861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG482100.1

Sequence Viewer

Length: 1170 bp
ATGTATCGACCTACGTGGGCGCATTCGACTCCGGTTGGCCCTCAGCGGTGGCAAGAGACTTGGGCTCGCCTACTTACTCCTTTCACCCTTTGGATATGTGTTTCGGTGAGCATTCGATATGGTTATTATGGAGACAACCGTATGGAGCTTGGCCCAAGCTCCTCGCGCTTGATGAGGGCTAGTTCTGTTTTTGTACAACAAGTTGTAGTGAGAGATGTTGATAAGAAAGGGGTTTCTCTCTATGCTTTTTCTGAAGAGCCTGAGTTGAGCCACCAAGCTAATTGGAGTGTGTCTGACTATTTGATTATTAAGACCTATAGTCGCAAGGGATTTTCTTTCTGGTTAAACAAGGGTTCAAGGATATCCATGAGATTGGAAGCTCACCCTGCTCATGTAAATCAACTCCAAGTTGTCATGCTTAAAGGGGAACGGAAATTAGAAGTACTGCAGCCGAAACAAACAAGTTTTGTGAATGCCTTTAATGAATCCAAAATTGGTAAAGAAGCTGAATATAGCATTGAGGAAGATGACAGGTACTACCTTGACATCATAAACACAAATCCTAAAAGCATAATCATACAGATGAATGTAAATGTTTCATCGAAGATGCATGATACTACGAATGCTAAGGCCATCTGCTCGACAGAAAATAAGGCTTCTTCGTGCCAGCTCAGGCTTATATTCCCCAATACTCATTATGTCATACTGACCACACCTAACAATGGGGATCTTCTTGGATGGTACATCGAGCTTTCTTTTGTGGCTCGTGTGATAACATATATTGGAATTTTAGGGTTTATAGTGGTCATGATCTTTCTAATATTGAAATACCTTGGCGCCTGTGATGCTGAGAGTAGTACTGTAGTAGAAGACACAAGACAAGAAATTAATGAGACTTACCCTATAGTGCCACGCAAGACAGTTCCACAAACATATGGTACAAATGAAGAAGATGATGATTCAGGAGCTTCGAGTAGCTCCTCAGAGGAATTATATGATGAGAAGCTATGCGTGATTTGTTATGATGAGCAGCGGAACTGCTTCTTTGTTCCTTGTGGTCACTGTGCTACCTGCTATGACTGTGCTCAGAGGATCATGGATGGGGAGAGTAAGGTGTGTCCAATTTGTAGAAGGCTCATTAATAAAGTGAGAAGATTGTTTAACTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4792 DUF4793 zf-C3HC4_3

Protein Analysis

389

Amino Acids

44.45

Weight (kDa)

6.41

Isoelectric Point (pI)

44.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
APD1-4_N PF16040 78 - 146 2.1e-16 E3 ubiquitin-protein ligase APD1-4, N-terminal
APD1-4_M PF16041 169 - 273 5.5e-24 E3 ubiquitin-protein ligase APD1-4, middle domain
zf-C3HC4_3 PF13920 334 - 383 2e-15 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 336 - 377 1.6e-06 Ring finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1079
AccB1I GGYRCC 1 cut(s) 836
AccII CGCG 1 cut(s) 166
AciI CCGC 2 cut(s) 46, 1033
AclWI GGATC 2 cut(s) 735, 1100
AcsI RAATTY 1 cut(s) 786
AcuI CTGAAG 1 cut(s) 273
AcyI GRCGYC 1 cut(s) 837
AfaI GTAC 6 cut(s) 195, 444, 536, 743, 859, 940
AfiI CCNNNNNNNGG 1 cut(s) 722
AgsI TTSAA 2 cut(s) 357, 826
AhdI GACNNNNNGTC 1 cut(s) 318
AjuI GAANNNNNNNTTGG 2 cut(s) 477, 509
Alw21I GWGCWC 1 cut(s) 1087
Alw26I GTCTC 3 cut(s) 50, 126, 887
AlwI GGATC 2 cut(s) 735, 1100
AoxI GGCC 3 cut(s) 37, 151, 630
ApeKI GCWGC 2 cut(s) 448, 1030
ApoI RAATTY 1 cut(s) 786
AseI ATTAAT 2 cut(s) 888, 1140
Asp700I GAANNNNTTC 1 cut(s) 1040
AspLEI GCGC 3 cut(s) 22, 168, 839
AspS9I GGNCC 2 cut(s) 38, 152
AsuHPI GGTGA 3 cut(s) 76, 118, 374
BanI GGYRCC 1 cut(s) 836
BanII GRGCYC 1 cut(s) 67
BauI CACGAG 1 cut(s) 765
BbsI GAAGAC 1 cut(s) 876
Bbv12I GWGCWC 1 cut(s) 1087
BbvCI CCTCAGC 1 cut(s) 42
BbvI GCAGC 2 cut(s) 460, 1042
BccI CCATC 3 cut(s) 641, 732, 1094
BcoDI GTCTC 3 cut(s) 50, 126, 887
BfaI CTAG 1 cut(s) 180
BfmI CTRYAG 4 cut(s) 316, 446, 861, 903
BfoI RGCGCY 1 cut(s) 840
BfuAI ACCTGC 1 cut(s) 1079
BisI GCNGC 2 cut(s) 449, 1031
BlsI GCNGC 2 cut(s) 450, 1032
BmcAI AGTACT 2 cut(s) 444, 859
BmeRI GACNNNNNGTC 1 cut(s) 318
BmgT120I GGNCC 2 cut(s) 38, 152
BmiI GGNNCC 1 cut(s) 838
BmsI GCATC 2 cut(s) 597, 835
BpiI GAAGAC 1 cut(s) 876
Bpu10I CCTNAGC 3 cut(s) 42, 627, 671
BsaAI YACGTR 1 cut(s) 15
BsaHI GRCGYC 1 cut(s) 837
BsaJI CCNNGG 1 cut(s) 832
BsaWI WCCGGW 1 cut(s) 31
Bsc4I CCNNNNNNNGG 1 cut(s) 722
BseDI CCNNGG 1 cut(s) 832
BseGI GGATG 2 cut(s) 743, 1105
BseLI CCNNNNNNNGG 1 cut(s) 722
BseMII CTCAG 6 cut(s) 56, 252, 685, 840, 996, 1100
BseRI GAGGAG 2 cut(s) 151, 970
BseXI GCAGC 2 cut(s) 460, 1042
Bsh1236I CGCG 1 cut(s) 166
BshFI GGCC 3 cut(s) 39, 153, 632
BshNI GGYRCC 1 cut(s) 836
BsiHKAI GWGCWC 1 cut(s) 1087
BsiSI CCGG 1 cut(s) 32
BslI CCNNNNNNNGG 1 cut(s) 722
BsmAI GTCTC 3 cut(s) 50, 126, 887
BsmI GAATGC 4 cut(s) 22, 111, 478, 628
BsnI GGCC 3 cut(s) 39, 153, 632
Bsp1286I GDGCHC 2 cut(s) 67, 1087
Bsp1407I TGTACA 1 cut(s) 193
Bsp143I GATC 3 cut(s) 727, 810, 1092
BspACI CCGC 2 cut(s) 46, 1033
BspANI GGCC 3 cut(s) 39, 153, 632
BspCNI CTCAG 6 cut(s) 55, 253, 684, 841, 995, 1099
BspFNI CGCG 1 cut(s) 166
BspHI TCATGA 1 cut(s) 807
BspLI GGNNCC 1 cut(s) 838
BspMAI CTGCAG 1 cut(s) 450
BspMI ACCTGC 1 cut(s) 1079
BspPI GGATC 2 cut(s) 735, 1100
BspQI GCTCTTC 1 cut(s) 249
BspT107I GGYRCC 1 cut(s) 836
BsrGI TGTACA 1 cut(s) 193
BssECI CCNNGG 1 cut(s) 832
BssMI GATC 3 cut(s) 727, 810, 1092
BssNI GRCGYC 1 cut(s) 837
BssSI CACGAG 1 cut(s) 765
BssT1I CCWWGG 1 cut(s) 832
Bst2BI CACGAG 1 cut(s) 765
Bst4CI ACNGT 5 cut(s) 140, 862, 922, 1064, 1082
Bst6I CTCTTC 1 cut(s) 249
BstACI GRCGYC 1 cut(s) 837
BstAUI TGTACA 1 cut(s) 193
BstBAI YACGTR 1 cut(s) 15
BstC8I GCNNGC 2 cut(s) 67, 668
BstDEI CTNAG 7 cut(s) 42, 261, 627, 671, 849, 982, 1086
BstF5I GGATG 2 cut(s) 743, 1105
BstFNI CGCG 1 cut(s) 166
BstH2I RGCGCY 1 cut(s) 840
BstHHI GCGC 3 cut(s) 22, 168, 839
BstKTI GATC 3 cut(s) 730, 813, 1095
BstMAI GTCTC 3 cut(s) 50, 126, 887
BstMBI GATC 3 cut(s) 727, 810, 1092
BstMWI GCNNNNNNNGC 3 cut(s) 165, 386, 845
BstSFI CTRYAG 4 cut(s) 316, 446, 861, 903
BstUI CGCG 1 cut(s) 166
BstV1I GCAGC 2 cut(s) 460, 1042
BstV2I GAAGAC 1 cut(s) 876
BstX2I RGATCY 1 cut(s) 727
BstXI CCANNNNNNTGG 1 cut(s) 373
BstYI RGATCY 1 cut(s) 727
BsuRI GGCC 3 cut(s) 39, 153, 632
BtsCI GGATG 2 cut(s) 743, 1105
BtsIMutI CAGTG 1 cut(s) 1060
BveI ACCTGC 1 cut(s) 1079
Cac8I GCNNGC 2 cut(s) 67, 668
CciI TCATGA 1 cut(s) 807
CfoI GCGC 3 cut(s) 22, 168, 839
Cfr13I GGNCC 2 cut(s) 38, 152
Csp6I GTAC 6 cut(s) 194, 443, 535, 742, 858, 939
CviAII CATG 6 cut(s) 367, 392, 415, 611, 808, 1096
CviQI GTAC 6 cut(s) 194, 443, 535, 742, 858, 939
DdeI CTNAG 7 cut(s) 42, 261, 627, 671, 849, 982, 1086
DinI GGCGCC 1 cut(s) 838
DpnI GATC 3 cut(s) 729, 812, 1094
DpnII GATC 3 cut(s) 727, 810, 1092
DriI GACNNNNNGTC 1 cut(s) 318
Eam1104I CTCTTC 1 cut(s) 249
Eam1105I GACNNNNNGTC 1 cut(s) 318
EarI CTCTTC 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 832
Eco24I GRGCYC 1 cut(s) 67
Eco32I GATATC 1 cut(s) 363
Eco57I CTGAAG 1 cut(s) 273
EcoRV GATATC 1 cut(s) 363
EcoT14I CCWWGG 1 cut(s) 832
EcoT22I ATGCAT 1 cut(s) 612
EcoT38I GRGCYC 1 cut(s) 67
EgeI GGCGCC 1 cut(s) 838
EheI GGCGCC 1 cut(s) 838
ErhI CCWWGG 1 cut(s) 832
FaeI CATG 6 cut(s) 370, 395, 418, 614, 811, 1099
FatI CATG 6 cut(s) 366, 391, 414, 610, 807, 1095
FauNDI CATATG 1 cut(s) 934
Fnu4HI GCNGC 2 cut(s) 449, 1031
FokI GGATG 2 cut(s) 750, 1112
FriOI GRGCYC 1 cut(s) 67
Fsp4HI GCNGC 2 cut(s) 449, 1031
FspBI CTAG 1 cut(s) 180
GlaI GCGC 3 cut(s) 21, 167, 838
GluI GCNGC 2 cut(s) 449, 1031
HaeII RGCGCY 1 cut(s) 840
HaeIII GGCC 3 cut(s) 39, 153, 632
HapII CCGG 1 cut(s) 32
HhaI GCGC 3 cut(s) 22, 168, 839
Hin1I GRCGYC 1 cut(s) 837
Hin1II CATG 6 cut(s) 370, 395, 418, 614, 811, 1099
Hin6I GCGC 3 cut(s) 20, 166, 837
HinP1I GCGC 3 cut(s) 20, 166, 837
HinfI GANTC 3 cut(s) 28, 485, 959
HpaII CCGG 1 cut(s) 32
HphI GGTGA 3 cut(s) 76, 118, 374
Hpy188I TCNGA 4 cut(s) 253, 295, 985, 1089
Hpy188III TCNNGA 2 cut(s) 808, 963
HpyAV CCTTC 1 cut(s) 1125
HpyCH4III ACNGT 5 cut(s) 140, 862, 922, 1064, 1082
HpyCH4IV ACGT 1 cut(s) 14
HpyCH4V TGCA 2 cut(s) 448, 610
HpyF10VI GCNNNNNNNGC 3 cut(s) 165, 386, 845
HpyF3I CTNAG 7 cut(s) 42, 261, 627, 671, 849, 982, 1086
HpySE526I ACGT 1 cut(s) 14
Hsp92I GRCGYC 1 cut(s) 837
Hsp92II CATG 6 cut(s) 370, 395, 418, 614, 811, 1099
HspAI GCGC 3 cut(s) 20, 166, 837
KasI GGCGCC 1 cut(s) 836
Kzo9I GATC 3 cut(s) 727, 810, 1092
LguI GCTCTTC 1 cut(s) 249
LmnI GCTCC 4 cut(s) 145, 164, 965, 983
Lsp1109I GCAGC 2 cut(s) 460, 1042
LweI GCATC 2 cut(s) 597, 835
MaeI CTAG 1 cut(s) 180
MaeII ACGT 1 cut(s) 14
MaeIII GTNAC 1 cut(s) 1058
MalI GATC 3 cut(s) 729, 812, 1094
MboI GATC 3 cut(s) 727, 810, 1092
MboII GAAGA 9 cut(s) 266, 536, 616, 651, 722, 881, 959, 962, 1164
MflI RGATCY 1 cut(s) 727
MhlI GDGCHC 2 cut(s) 67, 1087
MluCI AATT 7 cut(s) 280, 434, 492, 786, 885, 989, 1122
Mly113I GGCGCC 1 cut(s) 837
MlyI GAGTC 1 cut(s) 22
MnlI CCTC 7 cut(s) 51, 168, 172, 514, 979, 991, 1083
Mph1103I ATGCAT 1 cut(s) 612
MroXI GAANNNNTTC 1 cut(s) 1040
MseI TTAA 7 cut(s) 309, 344, 420, 480, 888, 1140, 1161
MslI CAYNNNNRTG 1 cut(s) 581
MspA1I CMGCKG 2 cut(s) 46, 1033
MspI CCGG 1 cut(s) 32
Mva1269I GAATGC 4 cut(s) 22, 111, 478, 628
MvnI CGCG 1 cut(s) 166
MwoI GCNNNNNNNGC 3 cut(s) 165, 386, 845
NarI GGCGCC 1 cut(s) 837
NdeI CATATG 1 cut(s) 934
NdeII GATC 3 cut(s) 727, 810, 1092
NlaIII CATG 6 cut(s) 370, 395, 418, 614, 811, 1099
NlaIV GGNNCC 1 cut(s) 838
NmuCI GTSAC 1 cut(s) 1058
NsiI ATGCAT 1 cut(s) 612
PagI TCATGA 1 cut(s) 807
PciSI GCTCTTC 1 cut(s) 249
PctI GAATGC 4 cut(s) 22, 111, 478, 628
PdmI GAANNNNTTC 1 cut(s) 1040
PfeI GAWTC 2 cut(s) 485, 959
PkrI GCNGC 2 cut(s) 450, 1032
PleI GAGTC 1 cut(s) 22
PluTI GGCGCC 1 cut(s) 840
PpsI GAGTC 1 cut(s) 22
Ppu21I YACGTR 1 cut(s) 15
PshBI ATTAAT 2 cut(s) 888, 1140
PspN4I GGNNCC 1 cut(s) 838
PspPI GGNCC 2 cut(s) 38, 152
PstI CTGCAG 1 cut(s) 450
PsuI RGATCY 1 cut(s) 727
RsaI GTAC 6 cut(s) 195, 444, 536, 743, 859, 940
RsaNI GTAC 6 cut(s) 194, 443, 535, 742, 858, 939
RseI CAYNNNNRTG 1 cut(s) 581
SapI GCTCTTC 1 cut(s) 249
SaqAI TTAA 7 cut(s) 309, 344, 420, 480, 888, 1140, 1161
SatI GCNGC 2 cut(s) 449, 1031
Sau3AI GATC 3 cut(s) 727, 810, 1092
Sau96I GGNCC 2 cut(s) 38, 152
ScaI AGTACT 2 cut(s) 444, 859
SchI GAGTC 1 cut(s) 22
SduI GDGCHC 2 cut(s) 67, 1087
SfaNI GCATC 2 cut(s) 597, 835
SfcI CTRYAG 4 cut(s) 316, 446, 861, 903
SfoI GGCGCC 1 cut(s) 838
SmiMI CAYNNNNRTG 1 cut(s) 581
Sse9I AATT 7 cut(s) 280, 434, 492, 786, 885, 989, 1122
SsiI CCGC 2 cut(s) 46, 1033
SspDI GGCGCC 1 cut(s) 836
SspI AATATT 1 cut(s) 822
SspMI CTAG 1 cut(s) 180
StyI CCWWGG 1 cut(s) 832
TaaI ACNGT 5 cut(s) 140, 862, 922, 1064, 1082
TaiI ACGT 1 cut(s) 17
TaqI TCGA 7 cut(s) 7, 26, 115, 602, 641, 747, 971
TasI AATT 7 cut(s) 280, 434, 492, 786, 885, 989, 1122
TatI WGTACW 3 cut(s) 193, 442, 857
TfiI GAWTC 2 cut(s) 485, 959
Tru1I TTAA 7 cut(s) 309, 344, 420, 480, 888, 1140, 1161
Tru9I TTAA 7 cut(s) 309, 344, 420, 480, 888, 1140, 1161
TscAI CASTG 1 cut(s) 1067
TseFI GTSAC 1 cut(s) 1058
TseI GCWGC 2 cut(s) 448, 1030
Tsp45I GTSAC 1 cut(s) 1058
TspDTI ATGAA 4 cut(s) 498, 588, 599, 960
TspGWI ACGGA 1 cut(s) 445
TspRI CASTG 1 cut(s) 1067
VspI ATTAAT 2 cut(s) 888, 1140
XapI RAATTY 1 cut(s) 786
XmnI GAANNNNTTC 1 cut(s) 1040
XspI CTAG 1 cut(s) 180
ZrmI AGTACT 2 cut(s) 444, 859
Zsp2I ATGCAT 1 cut(s) 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.