Zinc finger, C3HC4 type (RING finger)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G24204 AT4G24204 AT4G24204 |
| fragaria_vesca | FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_2g33452 FvH4_2g33452 FvH4_2g33452 |
| malus_domestica | MD08G1089900.v1.1 MD15G1074300.v1.1 MD15G1291000.v1.1 |
| prunus_persica | Prupe.1G427200_v2.0.a1 Prupe.6G226000_v2.0.a1 |
| pyrus_communis | pycom02g14610 pycom08g07330 pycom15g06950 pycom15g25460 |
| rosa_chinensis | RchiOBHm_Chr2g0107111 RchiOBHm_Chr6g0309061 |
| rosa_laevigata | RLG00000010593 RLG00000017555 |
| rosa_multiflora | Rmu_sc0002945.1_g000008 |
| rosa_roxburghii | Rroxscaffold_2G00136600 |
| rosa_rugosa | Rorug02G0140300 Rorug06G0369400 |
| rosa_samantha | Rh2AG191200 Rh2BG202900 Rh2CG196200 Rh2DG198400 Rh6AG482100 Rh6BG490900 Rh6CG496000 Rh6DG482600 |
| rosa_wichuraiana | Rw2G015100 Rw6G041970 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 177, 213 |
| AccII | CGCG | 1 cut(s) | 166 |
| AccIII | TCCGGA | 1 cut(s) | 362 |
| AciI | CCGC | 1 cut(s) | 305 |
| AclI | AACGTT | 1 cut(s) | 194 |
| AclWI | GGATC | 1 cut(s) | 518 |
| AcuI | CTGAAG | 1 cut(s) | 77 |
| AfaI | GTAC | 4 cut(s) | 143, 230, 262, 379 |
| AflIII | ACRYGT | 3 cut(s) | 164, 488, 533 |
| AgsI | TTSAA | 4 cut(s) | 68, 117, 518, 584 |
| AluBI | AGCT | 3 cut(s) | 55, 61, 396 |
| AluI | AGCT | 3 cut(s) | 55, 61, 396 |
| Alw21I | GWGCWC | 1 cut(s) | 505 |
| Alw44I | GTGCAC | 1 cut(s) | 501 |
| AlwI | GGATC | 1 cut(s) | 518 |
| Aor13HI | TCCGGA | 1 cut(s) | 362 |
| ApaLI | GTGCAC | 1 cut(s) | 501 |
| ApeKI | GCWGC | 3 cut(s) | 291, 372, 384 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 458 |
| BaeGI | GKGCMC | 2 cut(s) | 26, 505 |
| BbsI | GAAGAC | 1 cut(s) | 252 |
| Bbv12I | GWGCWC | 1 cut(s) | 505 |
| BbvI | GCAGC | 3 cut(s) | 303, 384, 396 |
| BccI | CCATC | 1 cut(s) | 410 |
| BclI | TGATCA | 1 cut(s) | 343 |
| BisI | GCNGC | 3 cut(s) | 292, 373, 385 |
| BlsI | GCNGC | 3 cut(s) | 293, 374, 386 |
| BmrI | ACTGGG | 3 cut(s) | 290, 317, 358 |
| BmsI | GCATC | 1 cut(s) | 396 |
| BmuI | ACTGGG | 3 cut(s) | 290, 317, 358 |
| BpiI | GAAGAC | 1 cut(s) | 252 |
| BpuEI | CTTGAG | 1 cut(s) | 271 |
| BsaBI | GATNNNNATC | 1 cut(s) | 126 |
| BsaJI | CCNNGG | 2 cut(s) | 402, 449 |
| BsaWI | WCCGGW | 1 cut(s) | 362 |
| Bse1I | ACTGG | 3 cut(s) | 296, 323, 353 |
| Bse8I | GATNNNNATC | 1 cut(s) | 126 |
| BseAI | TCCGGA | 1 cut(s) | 362 |
| BseDI | CCNNGG | 2 cut(s) | 402, 449 |
| BseGI | GGATG | 1 cut(s) | 274 |
| BseJI | GATNNNNATC | 1 cut(s) | 126 |
| BseNI | ACTGG | 3 cut(s) | 296, 323, 353 |
| BseRI | GAGGAG | 2 cut(s) | 268, 419 |
| BseSI | GKGCMC | 2 cut(s) | 26, 505 |
| BseXI | GCAGC | 3 cut(s) | 303, 384, 396 |
| Bsh1236I | CGCG | 1 cut(s) | 166 |
| BsiHKAI | GWGCWC | 1 cut(s) | 505 |
| BsiSI | CCGG | 1 cut(s) | 363 |
| BslFI | GGGAC | 1 cut(s) | 349 |
| BsmFI | GGGAC | 1 cut(s) | 349 |
| Bsp1286I | GDGCHC | 2 cut(s) | 26, 505 |
| Bsp13I | TCCGGA | 1 cut(s) | 362 |
| Bsp143I | GATC | 4 cut(s) | 127, 343, 432, 510 |
| BspACI | CCGC | 1 cut(s) | 305 |
| BspEI | TCCGGA | 1 cut(s) | 362 |
| BspFNI | CGCG | 1 cut(s) | 166 |
| BspPI | GGATC | 1 cut(s) | 518 |
| BsrI | ACTGG | 3 cut(s) | 296, 323, 353 |
| BssECI | CCNNGG | 2 cut(s) | 402, 449 |
| BssMI | GATC | 4 cut(s) | 127, 343, 432, 510 |
| BssNAI | GTATAC | 1 cut(s) | 214 |
| BssT1I | CCWWGG | 1 cut(s) | 449 |
| Bst1107I | GTATAC | 1 cut(s) | 214 |
| Bst4CI | ACNGT | 2 cut(s) | 38, 482 |
| BstDEI | CTNAG | 1 cut(s) | 463 |
| BstF5I | GGATG | 1 cut(s) | 274 |
| BstFNI | CGCG | 1 cut(s) | 166 |
| BstKTI | GATC | 4 cut(s) | 130, 346, 435, 513 |
| BstMBI | GATC | 4 cut(s) | 127, 343, 432, 510 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 381, 393 |
| BstNSI | RCATGY | 2 cut(s) | 492, 537 |
| BstSLI | GKGCMC | 2 cut(s) | 26, 505 |
| BstUI | CGCG | 1 cut(s) | 166 |
| BstV1I | GCAGC | 3 cut(s) | 303, 384, 396 |
| BstV2I | GAAGAC | 1 cut(s) | 252 |
| BstX2I | RGATCY | 1 cut(s) | 510 |
| BstYI | RGATCY | 1 cut(s) | 510 |
| BstZ17I | GTATAC | 1 cut(s) | 214 |
| BtgZI | GCGATG | 1 cut(s) | 135 |
| BtsCI | GGATG | 1 cut(s) | 274 |
| BtsIMutI | CAGTG | 5 cut(s) | 43, 282, 346, 441, 478 |
| Csp6I | GTAC | 4 cut(s) | 142, 229, 261, 378 |
| CviAII | CATG | 3 cut(s) | 217, 489, 534 |
| CviJI | RGCY | 4 cut(s) | 55, 61, 294, 396 |
| CviKI_1 | RGCY | 4 cut(s) | 55, 61, 294, 396 |
| CviQI | GTAC | 4 cut(s) | 142, 229, 261, 378 |
| DdeI | CTNAG | 1 cut(s) | 463 |
| DpnI | GATC | 4 cut(s) | 129, 345, 434, 512 |
| DpnII | GATC | 4 cut(s) | 127, 343, 432, 510 |
| Eco130I | CCWWGG | 1 cut(s) | 449 |
| Eco32I | GATATC | 1 cut(s) | 355 |
| Eco57I | CTGAAG | 1 cut(s) | 77 |
| EcoRV | GATATC | 1 cut(s) | 355 |
| EcoT14I | CCWWGG | 1 cut(s) | 449 |
| ErhI | CCWWGG | 1 cut(s) | 449 |
| FaeI | CATG | 3 cut(s) | 220, 492, 537 |
| FaqI | GGGAC | 1 cut(s) | 349 |
| FatI | CATG | 3 cut(s) | 216, 488, 533 |
| FbaI | TGATCA | 1 cut(s) | 343 |
| FblI | GTMKAC | 2 cut(s) | 177, 213 |
| Fnu4HI | GCNGC | 3 cut(s) | 292, 373, 385 |
| FokI | GGATG | 1 cut(s) | 281 |
| Fsp4HI | GCNGC | 3 cut(s) | 292, 373, 385 |
| GluI | GCNGC | 3 cut(s) | 292, 373, 385 |
| HapII | CCGG | 1 cut(s) | 363 |
| Hin1II | CATG | 3 cut(s) | 220, 492, 537 |
| HindIII | AAGCTT | 1 cut(s) | 59 |
| HinfI | GANTC | 2 cut(s) | 359, 584 |
| HpaII | CCGG | 1 cut(s) | 363 |
| Hpy166II | GTNNAC | 3 cut(s) | 178, 214, 503 |
| Hpy188I | TCNGA | 3 cut(s) | 52, 132, 403 |
| Hpy188III | TCNNGA | 1 cut(s) | 363 |
| Hpy8I | GTNNAC | 3 cut(s) | 178, 214, 503 |
| HpyAV | CCTTC | 1 cut(s) | 512 |
| HpyCH4III | ACNGT | 2 cut(s) | 38, 482 |
| HpyCH4IV | ACGT | 3 cut(s) | 144, 180, 194 |
| HpyCH4V | TGCA | 3 cut(s) | 372, 503, 546 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 381, 393 |
| HpyF3I | CTNAG | 1 cut(s) | 463 |
| HpySE526I | ACGT | 3 cut(s) | 144, 180, 194 |
| Hsp92II | CATG | 3 cut(s) | 220, 492, 537 |
| Kpn2I | TCCGGA | 1 cut(s) | 362 |
| Ksp22I | TGATCA | 1 cut(s) | 343 |
| Kzo9I | GATC | 4 cut(s) | 127, 343, 432, 510 |
| LmnI | GCTCC | 1 cut(s) | 255 |
| LpnPI | CCDG | 5 cut(s) | 309, 334, 336, 376, 394 |
| Lsp1109I | GCAGC | 3 cut(s) | 303, 384, 396 |
| LweI | GCATC | 1 cut(s) | 396 |
| MaeII | ACGT | 3 cut(s) | 144, 180, 194 |
| MaeIII | GTNAC | 4 cut(s) | 145, 181, 325, 476 |
| MalI | GATC | 4 cut(s) | 129, 345, 434, 512 |
| MboI | GATC | 4 cut(s) | 127, 343, 432, 510 |
| MboII | GAAGA | 3 cut(s) | 56, 257, 561 |
| MflI | RGATCY | 1 cut(s) | 510 |
| MhlI | GDGCHC | 2 cut(s) | 26, 505 |
| MluCI | AATT | 4 cut(s) | 76, 91, 367, 454 |
| MluI | ACGCGT | 1 cut(s) | 164 |
| MnlI | CCTC | 5 cut(s) | 13, 35, 246, 259, 397 |
| MroI | TCCGGA | 1 cut(s) | 362 |
| MroXI | GAANNNNTTC | 1 cut(s) | 458 |
| MseI | TTAA | 2 cut(s) | 95, 191 |
| MslI | CAYNNNNRTG | 1 cut(s) | 221 |
| MspI | CCGG | 1 cut(s) | 363 |
| MvnI | CGCG | 1 cut(s) | 166 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 381, 393 |
| NdeII | GATC | 4 cut(s) | 127, 343, 432, 510 |
| NlaIII | CATG | 3 cut(s) | 220, 492, 537 |
| NmuCI | GTSAC | 2 cut(s) | 145, 476 |
| NspI | RCATGY | 2 cut(s) | 492, 537 |
| PciI | ACATGT | 2 cut(s) | 488, 533 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 191 |
| PdmI | GAANNNNTTC | 1 cut(s) | 458 |
| PfeI | GAWTC | 2 cut(s) | 359, 584 |
| PflFI | GACNNNGTC | 1 cut(s) | 313 |
| PkrI | GCNGC | 3 cut(s) | 293, 374, 386 |
| PscI | ACATGT | 2 cut(s) | 488, 533 |
| Psp1406I | AACGTT | 1 cut(s) | 194 |
| PsuI | RGATCY | 1 cut(s) | 510 |
| PsyI | GACNNNGTC | 1 cut(s) | 313 |
| RsaI | GTAC | 4 cut(s) | 143, 230, 262, 379 |
| RsaNI | GTAC | 4 cut(s) | 142, 229, 261, 378 |
| RseI | CAYNNNNRTG | 1 cut(s) | 221 |
| SaqAI | TTAA | 2 cut(s) | 95, 191 |
| SatI | GCNGC | 3 cut(s) | 292, 373, 385 |
| Sau3AI | GATC | 4 cut(s) | 127, 343, 432, 510 |
| SduI | GDGCHC | 2 cut(s) | 26, 505 |
| SetI | ASST | 7 cut(s) | 14, 57, 63, 147, 183, 197, 398 |
| SfaNI | GCATC | 1 cut(s) | 396 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 221 |
| SmlI | CTYRAG | 2 cut(s) | 7, 250 |
| SmoI | CTYRAG | 2 cut(s) | 7, 250 |
| Sse9I | AATT | 4 cut(s) | 76, 91, 367, 454 |
| SsiI | CCGC | 1 cut(s) | 305 |
| StyI | CCWWGG | 1 cut(s) | 449 |
| TaaI | ACNGT | 2 cut(s) | 38, 482 |
| TaiI | ACGT | 3 cut(s) | 147, 183, 197 |
| TaqI | TCGA | 3 cut(s) | 71, 276, 357 |
| TasI | AATT | 4 cut(s) | 76, 91, 367, 454 |
| TatI | WGTACW | 2 cut(s) | 228, 260 |
| TfiI | GAWTC | 2 cut(s) | 359, 584 |
| Tru1I | TTAA | 2 cut(s) | 95, 191 |
| Tru9I | TTAA | 2 cut(s) | 95, 191 |
| TscAI | CASTG | 5 cut(s) | 43, 289, 353, 448, 485 |
| TseFI | GTSAC | 2 cut(s) | 145, 476 |
| TseI | GCWGC | 3 cut(s) | 291, 372, 384 |
| Tsp45I | GTSAC | 2 cut(s) | 145, 476 |
| TspDTI | ATGAA | 3 cut(s) | 17, 239, 258 |
| TspRI | CASTG | 5 cut(s) | 43, 289, 353, 448, 485 |
| Tth111I | GACNNNGTC | 1 cut(s) | 313 |
| VneI | GTGCAC | 1 cut(s) | 501 |
| XceI | RCATGY | 2 cut(s) | 492, 537 |
| XmiI | GTMKAC | 2 cut(s) | 177, 213 |
| XmnI | GAANNNNTTC | 1 cut(s) | 458 |