Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002655

Physical Location & Seq

Genomic Coordinates Reverse (-)

5078156 .. 5080063

Gene Structure 1908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1074300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAGATTGGAAGCTCATGCTACTATCTTAAATCAACTACAAGTTGTTATGCTTAAAGGGGAACAAAAAGTCGAAATATTGCAGCCGGAACAAACAAGTTCTCAGGACAGCCTCGCCCTCAATGAACCCAAAATCGGTAAAGAAGCTGAGTACAATATTGAGGAAGATGACAAGTACTACCTTGAATTCATAAACACAGATCCCAGGAGCCTAATTGCATTAGTGAATGTAAGTGTTTCATCAACGATGTATGATGTTACGAAAGCTAAGGACGTCTGTTCAACAACGAAGGGGTCTTGCCGGCTCAGCCTCGTATTCCCCAATACTCACTATGTCATACTAACAACACCTAACAATGGAGATCTTGGTGATTGGTACATCGAGCTTTCGTTCGTGGCTCGCGTAGTTACCTACATTGCGATTTTAGGGTTTATTGTGGTGGTTATTTTTCTGATACTGAAATACCTTGGAGCCTGTGATGGTGAGGATCGTACTTTAGTTGAAACAGCAGTGGAAGAAGTTAACGAGACTTACCCTATAGTGCCGCATAAGACGATTCTTCGACAGACATACGGGACAAATGAAGAAGATGAAGATTCAGGAGCTTCTAGTAGCTCCTCGGAGGAATTATACGACGAAAAATTATGCGTAATCTGTTACGACGAGCAGCGCAATTCCTTCTTCGTTCCTTGTGGTCATTGTGCCACCTGCTATGACTGTGCTCAAAGGATCATGGAGGGGGAGAATAAGGTGTGTCCAATATGCAGAAGGCTGATTCACAAAGTGAGAAAATTGTTCAACCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4792 DUF4793 zf-C3HC4_3

Protein Analysis

269

Amino Acids

30.28

Weight (kDa)

4.78

Isoelectric Point (pI)

53.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APD1-4_M	PF16041	49 - 151	4e-26	E3 ubiquitin-protein ligase APD1-4, middle domain
zf-C3HC4_3	PF13920	213 - 262	4.4e-16	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	215 - 256	2.6e-07	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24204 AT4G24204 AT4G24204
fragaria_vesca	FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_2g33452 FvH4_2g33452 FvH4_2g33452
malus_domestica	MD08G1089900.v1.1 MD15G1074300.v1.1 MD15G1291000.v1.1
prunus_persica	Prupe.1G427200_v2.0.a1 Prupe.6G226000_v2.0.a1
pyrus_communis	pycom02g14610 pycom08g07330 pycom15g06950 pycom15g25460
rosa_chinensis	RchiOBHm_Chr2g0107111 RchiOBHm_Chr6g0309061
rosa_laevigata	RLG00000010593 RLG00000017555
rosa_multiflora	Rmu_sc0002945.1_g000008
rosa_roxburghii	Rroxscaffold_2G00136600
rosa_rugosa	Rorug02G0140300 Rorug06G0369400
rosa_samantha	Rh2AG191200 Rh2BG202900 Rh2CG196200 Rh2DG198400 Rh6AG482100 Rh6BG490900 Rh6CG496000 Rh6DG482600
rosa_wichuraiana	Rw2G015100 Rw6G041970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	716
AatII	GACGTC	1 cut(s)	276
Acc36I	ACCTGC	1 cut(s)	716
AccII	CGCG	1 cut(s)	402
AciI	CCGC	1 cut(s)	545
AclWI	GGATC	3 cut(s)	194, 495, 737
AcsI	RAATTY	1 cut(s)	185
AcyI	GRCGYC	1 cut(s)	273
AdeI	CACNNNGTG	1 cut(s)	784
AfaI	GTAC	4 cut(s)	152, 176, 377, 493
AfiI	CCNNNNNNNGG	2 cut(s)	134, 356
AgsI	TTSAA	4 cut(s)	185, 282, 503, 799
AjnI	CCWGG	1 cut(s)	203
AluBI	AGCT	6 cut(s)	14, 146, 266, 385, 605, 615
AluI	AGCT	6 cut(s)	14, 146, 266, 385, 605, 615
Alw21I	GWGCWC	1 cut(s)	724
Alw26I	GTCTC	1 cut(s)	521
AlwI	GGATC	3 cut(s)	194, 495, 737
ApeKI	GCWGC	2 cut(s)	82, 667
ApoI	RAATTY	1 cut(s)	185
AspLEI	GCGC	1 cut(s)	672
AsuHPI	GGTGA	2 cut(s)	380, 494
Bbv12I	GWGCWC	1 cut(s)	724
BbvI	GCAGC	2 cut(s)	94, 679
BccI	CCATC	1 cut(s)	473
BciT130I	CCWGG	1 cut(s)	205
BcoDI	GTCTC	1 cut(s)	521
BfaI	CTAG	1 cut(s)	609
BfmI	CTRYAG	1 cut(s)	537
BfuAI	ACCTGC	1 cut(s)	716
BglII	AGATCT	1 cut(s)	361
BisI	GCNGC	3 cut(s)	83, 545, 668
BlpI	GCTNAGC	1 cut(s)	305
BlsI	GCNGC	3 cut(s)	84, 546, 669
BmcAI	AGTACT	1 cut(s)	176
Bme1390I	CCNGG	1 cut(s)	205
BmiI	GGNNCC	2 cut(s)	209, 472
BmrFI	CCNGG	1 cut(s)	205
Bpu10I	CCTNAGC	1 cut(s)	267
Bpu1102I	GCTNAGC	1 cut(s)	305
BsaHI	GRCGYC	1 cut(s)	273
BsaJI	CCNNGG	3 cut(s)	203, 466, 618
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 356
Bse118I	RCCGGY	1 cut(s)	300
Bse3DI	GCAATG	1 cut(s)	414
BseBI	CCWGG	1 cut(s)	205
BseDI	CCNNGG	3 cut(s)	203, 466, 618
BseLI	CCNNNNNNNGG	2 cut(s)	134, 356
BseMI	GCAATG	1 cut(s)	414
BseMII	CTCAG	3 cut(s)	116, 138, 319
BseRI	GAGGAG	1 cut(s)	607
BseXI	GCAGC	2 cut(s)	94, 679
Bsh1236I	CGCG	1 cut(s)	402
BsiHKAI	GWGCWC	1 cut(s)	724
BsiSI	CCGG	2 cut(s)	86, 301
BslFI	GGGAC	1 cut(s)	589
BslI	CCNNNNNNNGG	2 cut(s)	134, 356
BsmAI	GTCTC	1 cut(s)	521
BsmFI	GGGAC	1 cut(s)	589
Bsp1286I	GDGCHC	1 cut(s)	724
Bsp143I	GATC	4 cut(s)	199, 361, 487, 729
Bsp1720I	GCTNAGC	1 cut(s)	305
BspACI	CCGC	1 cut(s)	545
BspCNI	CTCAG	3 cut(s)	115, 139, 318
BspFNI	CGCG	1 cut(s)	402
BspLI	GGNNCC	2 cut(s)	209, 472
BspMI	ACCTGC	1 cut(s)	716
BspPI	GGATC	3 cut(s)	194, 495, 737
BsrDI	GCAATG	1 cut(s)	414
BsrFI	RCCGGY	1 cut(s)	300
BssAI	RCCGGY	1 cut(s)	300
BssECI	CCNNGG	3 cut(s)	203, 466, 618
BssMI	GATC	4 cut(s)	199, 361, 487, 729
BssNI	GRCGYC	1 cut(s)	273
BssT1I	CCWWGG	1 cut(s)	466
Bst2UI	CCWGG	1 cut(s)	205
Bst4CI	ACNGT	1 cut(s)	719
BstACI	GRCGYC	1 cut(s)	273
BstC8I	GCNNGC	2 cut(s)	302, 400
BstDEI	CTNAG	4 cut(s)	102, 147, 267, 305
BstFNI	CGCG	1 cut(s)	402
BstHHI	GCGC	1 cut(s)	672
BstKTI	GATC	4 cut(s)	202, 364, 490, 732
BstMAI	GTCTC	1 cut(s)	521
BstMBI	GATC	4 cut(s)	199, 361, 487, 729
BstMWI	GCNNNNNNNGC	1 cut(s)	306
BstNI	CCWGG	1 cut(s)	205
BstSCI	CCNGG	1 cut(s)	203
BstSFI	CTRYAG	1 cut(s)	537
BstUI	CGCG	1 cut(s)	402
BstV1I	GCAGC	2 cut(s)	94, 679
BstX2I	RGATCY	2 cut(s)	199, 361
BstYI	RGATCY	2 cut(s)	199, 361
BtsI	GCAGTG	1 cut(s)	516
BtsIMutI	CAGTG	1 cut(s)	516
BveI	ACCTGC	1 cut(s)	716
Cac8I	GCNNGC	2 cut(s)	302, 400
CfoI	GCGC	1 cut(s)	672
Cfr10I	RCCGGY	1 cut(s)	300
Csp6I	GTAC	4 cut(s)	151, 175, 376, 492
CviAII	CATG	2 cut(s)	17, 733
CviQI	GTAC	4 cut(s)	151, 175, 376, 492
DdeI	CTNAG	4 cut(s)	102, 147, 267, 305
DpnI	GATC	4 cut(s)	201, 363, 489, 731
DpnII	GATC	4 cut(s)	199, 361, 487, 729
DraIII	CACNNNGTG	1 cut(s)	784
Eco130I	CCWWGG	1 cut(s)	466
EcoRI	GAATTC	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	203
EcoT14I	CCWWGG	1 cut(s)	466
ErhI	CCWWGG	1 cut(s)	466
FaeI	CATG	2 cut(s)	20, 736
FaqI	GGGAC	1 cut(s)	589
FatI	CATG	2 cut(s)	16, 732
Fnu4HI	GCNGC	3 cut(s)	83, 545, 668
Fsp4HI	GCNGC	3 cut(s)	83, 545, 668
FspBI	CTAG	1 cut(s)	609
GlaI	GCGC	1 cut(s)	671
GluI	GCNGC	3 cut(s)	83, 545, 668
HapII	CCGG	2 cut(s)	86, 301
HhaI	GCGC	1 cut(s)	672
Hin1I	GRCGYC	1 cut(s)	273
Hin1II	CATG	2 cut(s)	20, 736
Hin6I	GCGC	1 cut(s)	670
HinP1I	GCGC	1 cut(s)	670
HincII	GTYRAC	1 cut(s)	523
HindII	GTYRAC	1 cut(s)	523
HinfI	GANTC	3 cut(s)	556, 596, 775
HpaI	GTTAAC	1 cut(s)	523
HpaII	CCGG	2 cut(s)	86, 301
HphI	GGTGA	2 cut(s)	380, 494
Hpy166II	GTNNAC	1 cut(s)	523
Hpy188I	TCNGA	2 cut(s)	453, 622
Hpy188III	TCNNGA	2 cut(s)	104, 600
Hpy8I	GTNNAC	1 cut(s)	523
Hpy99I	CGWCG	2 cut(s)	638, 665
HpyAV	CCTTC	3 cut(s)	283, 688, 762
HpyCH4III	ACNGT	1 cut(s)	719
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	3 cut(s)	82, 218, 765
HpyF10VI	GCNNNNNNNGC	1 cut(s)	306
HpyF3I	CTNAG	4 cut(s)	102, 147, 267, 305
HpySE526I	ACGT	1 cut(s)	273
Hsp92I	GRCGYC	1 cut(s)	273
Hsp92II	CATG	2 cut(s)	20, 736
HspAI	GCGC	1 cut(s)	670
KroI	GCCGGC	1 cut(s)	300
KroNI	GCCGGC	1 cut(s)	302
KspAI	GTTAAC	1 cut(s)	523
Kzo9I	GATC	4 cut(s)	199, 361, 487, 729
LmnI	GCTCC	4 cut(s)	207, 470, 602, 620
LpnPI	CCDG	8 cut(s)	89, 99, 190, 217, 314, 487, 585, 721
Lsp1109I	GCAGC	2 cut(s)	94, 679
MaeI	CTAG	1 cut(s)	609
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	3 cut(s)	256, 406, 656
MalI	GATC	4 cut(s)	201, 363, 489, 731
MboI	GATC	4 cut(s)	199, 361, 487, 729
MboII	GAAGA	7 cut(s)	176, 527, 551, 596, 599, 605, 673
MflI	RGATCY	2 cut(s)	199, 361
MhlI	GDGCHC	1 cut(s)	724
MluCI	AATT	6 cut(s)	185, 213, 626, 641, 673, 791
MnlI	CCTC	8 cut(s)	122, 128, 154, 320, 478, 616, 628, 730
MroNI	GCCGGC	1 cut(s)	300
MseI	TTAA	3 cut(s)	29, 54, 522
MspI	CCGG	2 cut(s)	86, 301
MspR9I	CCNGG	1 cut(s)	205
MvaI	CCWGG	1 cut(s)	205
MvnI	CGCG	1 cut(s)	402
MwoI	GCNNNNNNNGC	1 cut(s)	306
NaeI	GCCGGC	1 cut(s)	302
NdeII	GATC	4 cut(s)	199, 361, 487, 729
NgoMIV	GCCGGC	1 cut(s)	300
NlaIII	CATG	2 cut(s)	20, 736
NlaIV	GGNNCC	2 cut(s)	209, 472
PaqCI	CACCTGC	1 cut(s)	716
PcsI	WCGNNNNNNNCGW	1 cut(s)	399
PdiI	GCCGGC	1 cut(s)	302
PfeI	GAWTC	3 cut(s)	556, 596, 775
PkrI	GCNGC	3 cut(s)	84, 546, 669
Psp6I	CCWGG	1 cut(s)	203
PspGI	CCWGG	1 cut(s)	203
PspN4I	GGNNCC	2 cut(s)	209, 472
PsuI	RGATCY	2 cut(s)	199, 361
RsaI	GTAC	4 cut(s)	152, 176, 377, 493
RsaNI	GTAC	4 cut(s)	151, 175, 376, 492
SaqAI	TTAA	3 cut(s)	29, 54, 522
SatI	GCNGC	3 cut(s)	83, 545, 668
Sau3AI	GATC	4 cut(s)	199, 361, 487, 729
ScaI	AGTACT	1 cut(s)	176
ScrFI	CCNGG	1 cut(s)	205
SduI	GDGCHC	1 cut(s)	724
SfcI	CTRYAG	1 cut(s)	537
Sse9I	AATT	6 cut(s)	185, 213, 626, 641, 673, 791
SsiI	CCGC	1 cut(s)	545
SspI	AATATT	2 cut(s)	78, 157
SspMI	CTAG	1 cut(s)	609
StyD4I	CCNGG	1 cut(s)	203
StyI	CCWWGG	1 cut(s)	466
TaaI	ACNGT	1 cut(s)	719
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	3 cut(s)	72, 381, 562
TasI	AATT	6 cut(s)	185, 213, 626, 641, 673, 791
TatI	WGTACW	2 cut(s)	150, 174
TauI	GCSGC	1 cut(s)	547
TfiI	GAWTC	3 cut(s)	556, 596, 775
Tru1I	TTAA	3 cut(s)	29, 54, 522
Tru9I	TTAA	3 cut(s)	29, 54, 522
TscAI	CASTG	1 cut(s)	516
TseI	GCWGC	2 cut(s)	82, 667
TspDTI	ATGAA	5 cut(s)	138, 178, 228, 597, 606
TspRI	CASTG	1 cut(s)	516
XapI	RAATTY	1 cut(s)	185
XspI	CTAG	1 cut(s)	609
ZraI	GACGTC	1 cut(s)	274
ZrmI	AGTACT	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.