Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002945.1

Orthogroup ID

OG0002655

Physical Location & Seq

Genomic Coordinates Forward (+)

45894 .. 48415

Gene Structure 2522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002945.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

atgaactcaaggtgttttgagggcacaaacataaacagtggaggcatttcagagctcattgttggttcaagcgatgatgatctgatagattggtacgtcacgcttacttttctaacgcgtttgcttgtctacgttacaattttaacgttgcttgtagttgttgtatacatgataatgaagtacataagcgattatgaagacttgaggagcagtacagaggatgttttcgattacactgaaagcagcccagtattaccgccggcaaagtcaatcccggtaacatacgggacttgtgatcactgggatatcgaatccggaaattgcagcagtaccagcagcatcattagctcgtccgaggagttatacgatgggaaaatatgtgtgatctgctacactgacccaaggaattgtttcttagttccttgtggtcactgtgctacatgttatgactgtgcacaaaggatctttgaaggggaaaataggacatgtccaatatgcagaagattgattaggaaagtaagaaagttccttcaaatcccagatacctccgccgcccaacttgaagatctcaaccccaggagcccagaaccggcggcgccacctccagaacaggccggaacaaccccgaaccgggctccagaagtgacgaaagtcttcctgcccggctcaaagcctttcgctcagcctctgacaacgatactccaccatcagaagcccctcgaccccagatccccggaaccggaaagttcatcaccggaaccggcctataagtacctgaaccggcctataagtacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

265

Amino Acids

29.51

Weight (kDa)

4.91

Isoelectric Point (pI)

60.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24204 AT4G24204 AT4G24204
fragaria_vesca	FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_2g33452 FvH4_2g33452 FvH4_2g33452
malus_domestica	MD08G1089900.v1.1 MD15G1074300.v1.1 MD15G1291000.v1.1
prunus_persica	Prupe.1G427200_v2.0.a1 Prupe.6G226000_v2.0.a1
pyrus_communis	pycom02g14610 pycom08g07330 pycom15g06950 pycom15g25460
rosa_chinensis	RchiOBHm_Chr2g0107111 RchiOBHm_Chr6g0309061
rosa_laevigata	RLG00000010593 RLG00000017555
rosa_multiflora	Rmu_sc0002945.1_g000008
rosa_roxburghii	Rroxscaffold_2G00136600
rosa_rugosa	Rorug02G0140300 Rorug06G0369400
rosa_samantha	Rh2AG191200 Rh2BG202900 Rh2CG196200 Rh2DG198400 Rh6AG482100 Rh6BG490900 Rh6CG496000 Rh6DG482600
rosa_wichuraiana	Rw2G015100 Rw6G041970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	595
AccI	GTMKAC	2 cut(s)	129, 165
AccII	CGCG	1 cut(s)	118
AccIII	TCCGGA	1 cut(s)	314
AciI	CCGC	4 cut(s)	257, 549, 552, 593
AclI	AACGTT	1 cut(s)	146
AclWI	GGATC	2 cut(s)	470, 723
AcyI	GRCGYC	1 cut(s)	596
AfaI	GTAC	6 cut(s)	95, 182, 214, 331, 773, 793
AfiI	CCNNNNNNNGG	4 cut(s)	589, 630, 631, 739
AflIII	ACRYGT	3 cut(s)	116, 440, 485
AgsI	TTSAA	4 cut(s)	69, 470, 533, 563
AjnI	CCWGG	1 cut(s)	575
AluBI	AGCT	2 cut(s)	55, 348
AluI	AGCT	2 cut(s)	55, 348
Alw21I	GWGCWC	2 cut(s)	57, 457
Alw44I	GTGCAC	1 cut(s)	453
AlwI	GGATC	2 cut(s)	470, 723
AlwNI	CAGNNNCTG	1 cut(s)	688
Aor13HI	TCCGGA	1 cut(s)	314
AoxI	GGCC	3 cut(s)	612, 762, 782
ApaLI	GTGCAC	1 cut(s)	453
ApeKI	GCWGC	3 cut(s)	243, 324, 336
Asp700I	GAANNNNTTC	2 cut(s)	410, 653
AspLEI	GCGC	1 cut(s)	598
AsuC2I	CCSGG	4 cut(s)	275, 632, 663, 734
AsuHPI	GGTGA	1 cut(s)	744
BaeGI	GKGCMC	2 cut(s)	26, 457
BanI	GGYRCC	1 cut(s)	595
BanII	GRGCYC	3 cut(s)	57, 584, 637
BbsI	GAAGAC	2 cut(s)	204, 646
Bbv12I	GWGCWC	2 cut(s)	57, 457
BbvI	GCAGC	3 cut(s)	255, 336, 348
BccI	CCATC	2 cut(s)	362, 714
BciT130I	CCWGG	1 cut(s)	577
BclI	TGATCA	1 cut(s)	295
BcnI	CCSGG	4 cut(s)	275, 632, 663, 734
BfoI	RGCGCY	1 cut(s)	599
BglII	AGATCT	1 cut(s)	565
BisI	GCNGC	5 cut(s)	244, 325, 337, 552, 594
BlpI	GCTNAGC	1 cut(s)	681
BlsI	GCNGC	5 cut(s)	245, 326, 338, 553, 595
Bme1390I	CCNGG	5 cut(s)	275, 577, 632, 663, 734
BmiI	GGNNCC	5 cut(s)	581, 597, 636, 738, 759
BmrFI	CCNGG	5 cut(s)	275, 577, 632, 663, 734
BmrI	ACTGGG	2 cut(s)	242, 310
BmsI	GCATC	1 cut(s)	348
BmuI	ACTGGG	2 cut(s)	242, 310
BoxI	GACNNNNGTC	1 cut(s)	650
BpiI	GAAGAC	2 cut(s)	204, 646
BpmI	CTGGAG	2 cut(s)	588, 621
Bpu1102I	GCTNAGC	1 cut(s)	681
BpuEI	CTTGAG	1 cut(s)	223
BpuMI	CCSGG	4 cut(s)	275, 632, 663, 734
BsaBI	GATNNNNATC	1 cut(s)	78
BsaHI	GRCGYC	1 cut(s)	596
BsaJI	CCNNGG	4 cut(s)	354, 401, 575, 732
BsaWI	WCCGGW	3 cut(s)	314, 739, 754
Bsc4I	CCNNNNNNNGG	4 cut(s)	589, 630, 631, 739
Bse118I	RCCGGY	4 cut(s)	259, 589, 760, 780
Bse1I	ACTGG	2 cut(s)	248, 305
Bse8I	GATNNNNATC	1 cut(s)	78
BseAI	TCCGGA	1 cut(s)	314
BseBI	CCWGG	1 cut(s)	577
BseDI	CCNNGG	4 cut(s)	354, 401, 575, 732
BseGI	GGATG	1 cut(s)	226
BseJI	GATNNNNATC	1 cut(s)	78
BseLI	CCNNNNNNNGG	4 cut(s)	589, 630, 631, 739
BseMII	CTCAG	1 cut(s)	695
BseNI	ACTGG	2 cut(s)	248, 305
BseRI	GAGGAG	2 cut(s)	220, 371
BseSI	GKGCMC	2 cut(s)	26, 457
BseXI	GCAGC	3 cut(s)	255, 336, 348
Bsh1236I	CGCG	1 cut(s)	118
BshFI	GGCC	3 cut(s)	614, 764, 784
BshNI	GGYRCC	1 cut(s)	595
BsiHKAI	GWGCWC	2 cut(s)	57, 457
BslFI	GGGAC	1 cut(s)	301
BslI	CCNNNNNNNGG	4 cut(s)	589, 630, 631, 739
BsmFI	GGGAC	1 cut(s)	301
BsnI	GGCC	3 cut(s)	614, 764, 784
Bsp1286I	GDGCHC	5 cut(s)	26, 57, 457, 584, 637
Bsp13I	TCCGGA	1 cut(s)	314
Bsp143I	GATC	6 cut(s)	79, 295, 384, 462, 565, 728
Bsp1720I	GCTNAGC	1 cut(s)	681
BspACI	CCGC	4 cut(s)	257, 549, 552, 593
BspANI	GGCC	3 cut(s)	614, 764, 784
BspCNI	CTCAG	1 cut(s)	694
BspEI	TCCGGA	1 cut(s)	314
BspFNI	CGCG	1 cut(s)	118
BspLI	GGNNCC	5 cut(s)	581, 597, 636, 738, 759
BspPI	GGATC	2 cut(s)	470, 723
BspT107I	GGYRCC	1 cut(s)	595
BsrFI	RCCGGY	4 cut(s)	259, 589, 760, 780
BsrI	ACTGG	2 cut(s)	248, 305
BssAI	RCCGGY	4 cut(s)	259, 589, 760, 780
BssECI	CCNNGG	4 cut(s)	354, 401, 575, 732
BssMI	GATC	6 cut(s)	79, 295, 384, 462, 565, 728
BssNAI	GTATAC	1 cut(s)	166
BssNI	GRCGYC	1 cut(s)	596
BssT1I	CCWWGG	1 cut(s)	401
Bst1107I	GTATAC	1 cut(s)	166
Bst2UI	CCWGG	1 cut(s)	577
Bst4CI	ACNGT	3 cut(s)	38, 434, 452
BstACI	GRCGYC	1 cut(s)	596
BstC8I	GCNNGC	1 cut(s)	261
BstDEI	CTNAG	2 cut(s)	415, 681
BstF5I	GGATG	1 cut(s)	226
BstFNI	CGCG	1 cut(s)	118
BstH2I	RGCGCY	1 cut(s)	599
BstHHI	GCGC	1 cut(s)	598
BstKTI	GATC	6 cut(s)	82, 298, 387, 465, 568, 731
BstMBI	GATC	6 cut(s)	79, 295, 384, 462, 565, 728
BstMWI	GCNNNNNNNGC	2 cut(s)	333, 345
BstNI	CCWGG	1 cut(s)	577
BstNSI	RCATGY	2 cut(s)	444, 489
BstPAI	GACNNNNGTC	1 cut(s)	650
BstSCI	CCNGG	5 cut(s)	273, 575, 630, 661, 732
BstSLI	GKGCMC	2 cut(s)	26, 457
BstUI	CGCG	1 cut(s)	118
BstV1I	GCAGC	3 cut(s)	255, 336, 348
BstV2I	GAAGAC	2 cut(s)	204, 646
BstX2I	RGATCY	3 cut(s)	462, 565, 728
BstYI	RGATCY	3 cut(s)	462, 565, 728
BstZ17I	GTATAC	1 cut(s)	166
BsuRI	GGCC	3 cut(s)	614, 764, 784
BtgZI	GCGATG	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	226
BtsIMutI	CAGTG	5 cut(s)	43, 234, 298, 393, 430
Cac8I	GCNNGC	1 cut(s)	261
CaiI	CAGNNNCTG	1 cut(s)	688
CfoI	GCGC	1 cut(s)	598
Cfr10I	RCCGGY	4 cut(s)	259, 589, 760, 780
Csp6I	GTAC	6 cut(s)	94, 181, 213, 330, 772, 792
CviAII	CATG	3 cut(s)	169, 441, 486
CviQI	GTAC	6 cut(s)	94, 181, 213, 330, 772, 792
DdeI	CTNAG	2 cut(s)	415, 681
DinI	GGCGCC	1 cut(s)	597
DpnI	GATC	6 cut(s)	81, 297, 386, 464, 567, 730
DpnII	GATC	6 cut(s)	79, 295, 384, 462, 565, 728
EciI	GGCGGA	1 cut(s)	538
Ecl136II	GAGCTC	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	401
Eco24I	GRGCYC	3 cut(s)	57, 584, 637
Eco32I	GATATC	1 cut(s)	307
Eco53kI	GAGCTC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	575
EcoRV	GATATC	1 cut(s)	307
EcoT14I	CCWWGG	1 cut(s)	401
EcoT38I	GRGCYC	3 cut(s)	57, 584, 637
EgeI	GGCGCC	1 cut(s)	597
EheI	GGCGCC	1 cut(s)	597
ErhI	CCWWGG	1 cut(s)	401
FaeI	CATG	3 cut(s)	172, 444, 489
FaqI	GGGAC	1 cut(s)	301
FatI	CATG	3 cut(s)	168, 440, 485
FbaI	TGATCA	1 cut(s)	295
FblI	GTMKAC	2 cut(s)	129, 165
Fnu4HI	GCNGC	5 cut(s)	244, 325, 337, 552, 594
FokI	GGATG	1 cut(s)	233
FriOI	GRGCYC	3 cut(s)	57, 584, 637
Fsp4HI	GCNGC	5 cut(s)	244, 325, 337, 552, 594
GlaI	GCGC	1 cut(s)	597
GluI	GCNGC	5 cut(s)	244, 325, 337, 552, 594
GsuI	CTGGAG	2 cut(s)	588, 621
HaeII	RGCGCY	1 cut(s)	599
HaeIII	GGCC	3 cut(s)	614, 764, 784
HhaI	GCGC	1 cut(s)	598
Hin1I	GRCGYC	1 cut(s)	596
Hin1II	CATG	3 cut(s)	172, 444, 489
Hin6I	GCGC	1 cut(s)	596
HinP1I	GCGC	1 cut(s)	596
HinfI	GANTC	1 cut(s)	311
HphI	GGTGA	1 cut(s)	744
Hpy166II	GTNNAC	3 cut(s)	130, 166, 455
Hpy188I	TCNGA	5 cut(s)	52, 84, 355, 690, 711
Hpy188III	TCNNGA	3 cut(s)	315, 605, 638
Hpy8I	GTNNAC	3 cut(s)	130, 166, 455
HpyAV	CCTTC	2 cut(s)	464, 539
HpyCH4III	ACNGT	3 cut(s)	38, 434, 452
HpyCH4IV	ACGT	3 cut(s)	96, 132, 146
HpyCH4V	TGCA	3 cut(s)	324, 455, 498
HpyF10VI	GCNNNNNNNGC	2 cut(s)	333, 345
HpyF3I	CTNAG	2 cut(s)	415, 681
HpySE526I	ACGT	3 cut(s)	96, 132, 146
Hsp92I	GRCGYC	1 cut(s)	596
Hsp92II	CATG	3 cut(s)	172, 444, 489
HspAI	GCGC	1 cut(s)	596
KasI	GGCGCC	1 cut(s)	595
Kpn2I	TCCGGA	1 cut(s)	314
KroI	GCCGGC	1 cut(s)	259
KroNI	GCCGGC	1 cut(s)	261
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	6 cut(s)	79, 295, 384, 462, 565, 728
LmnI	GCTCC	3 cut(s)	207, 579, 640
Lsp1109I	GCAGC	3 cut(s)	255, 336, 348
LweI	GCATC	1 cut(s)	348
MaeII	ACGT	3 cut(s)	96, 132, 146
MaeIII	GTNAC	5 cut(s)	97, 133, 277, 428, 643
MalI	GATC	6 cut(s)	81, 297, 386, 464, 567, 730
MboI	GATC	6 cut(s)	79, 295, 384, 462, 565, 728
MboII	GAAGA	4 cut(s)	209, 513, 575, 646
MflI	RGATCY	3 cut(s)	462, 565, 728
MhlI	GDGCHC	5 cut(s)	26, 57, 457, 584, 637
MluCI	AATT	3 cut(s)	138, 319, 406
MluI	ACGCGT	1 cut(s)	116
Mly113I	GGCGCC	1 cut(s)	596
MnlI	CCTC	9 cut(s)	13, 35, 198, 211, 349, 556, 612, 696, 728
MroI	TCCGGA	1 cut(s)	314
MroNI	GCCGGC	1 cut(s)	259
MroXI	GAANNNNTTC	2 cut(s)	410, 653
MseI	TTAA	1 cut(s)	143
MslI	CAYNNNNRTG	1 cut(s)	173
MspR9I	CCNGG	5 cut(s)	275, 577, 632, 663, 734
MvaI	CCWGG	1 cut(s)	577
MvnI	CGCG	1 cut(s)	118
MwoI	GCNNNNNNNGC	2 cut(s)	333, 345
NaeI	GCCGGC	1 cut(s)	261
NarI	GGCGCC	1 cut(s)	596
NciI	CCSGG	4 cut(s)	275, 632, 663, 734
NdeII	GATC	6 cut(s)	79, 295, 384, 462, 565, 728
NgoMIV	GCCGGC	1 cut(s)	259
NlaIII	CATG	3 cut(s)	172, 444, 489
NlaIV	GGNNCC	5 cut(s)	581, 597, 636, 738, 759
NmuCI	GTSAC	3 cut(s)	97, 428, 643
NspI	RCATGY	2 cut(s)	444, 489
PciI	ACATGT	2 cut(s)	440, 485
PdiI	GCCGGC	1 cut(s)	261
PdmI	GAANNNNTTC	2 cut(s)	410, 653
PfeI	GAWTC	1 cut(s)	311
PkrI	GCNGC	5 cut(s)	245, 326, 338, 553, 595
PluTI	GGCGCC	1 cut(s)	599
PscI	ACATGT	2 cut(s)	440, 485
PshAI	GACNNNNGTC	1 cut(s)	650
Psp124BI	GAGCTC	1 cut(s)	57
Psp1406I	AACGTT	1 cut(s)	146
Psp6I	CCWGG	1 cut(s)	575
PspGI	CCWGG	1 cut(s)	575
PspN4I	GGNNCC	5 cut(s)	581, 597, 636, 738, 759
PstNI	CAGNNNCTG	1 cut(s)	688
PsuI	RGATCY	3 cut(s)	462, 565, 728
RsaI	GTAC	6 cut(s)	95, 182, 214, 331, 773, 793
RsaNI	GTAC	6 cut(s)	94, 181, 213, 330, 772, 792
RseI	CAYNNNNRTG	1 cut(s)	173
SacI	GAGCTC	1 cut(s)	57
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	5 cut(s)	244, 325, 337, 552, 594
Sau3AI	GATC	6 cut(s)	79, 295, 384, 462, 565, 728
ScrFI	CCNGG	5 cut(s)	275, 577, 632, 663, 734
SduI	GDGCHC	5 cut(s)	26, 57, 457, 584, 637
SfaNI	GCATC	1 cut(s)	348
SfoI	GGCGCC	1 cut(s)	597
SmiMI	CAYNNNNRTG	1 cut(s)	173
SmlI	CTYRAG	2 cut(s)	7, 202
SmoI	CTYRAG	2 cut(s)	7, 202
Sse9I	AATT	3 cut(s)	138, 319, 406
SsiI	CCGC	4 cut(s)	257, 549, 552, 593
SspDI	GGCGCC	1 cut(s)	595
SstI	GAGCTC	1 cut(s)	57
StyD4I	CCNGG	5 cut(s)	273, 575, 630, 661, 732
StyI	CCWWGG	1 cut(s)	401
TaaI	ACNGT	3 cut(s)	38, 434, 452
TaiI	ACGT	3 cut(s)	99, 135, 149
TaqI	TCGA	3 cut(s)	228, 309, 720
TasI	AATT	3 cut(s)	138, 319, 406
TatI	WGTACW	2 cut(s)	180, 212
TauI	GCSGC	2 cut(s)	554, 596
TfiI	GAWTC	1 cut(s)	311
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TscAI	CASTG	5 cut(s)	43, 241, 305, 400, 437
TseFI	GTSAC	3 cut(s)	97, 428, 643
TseI	GCWGC	3 cut(s)	243, 324, 336
Tsp45I	GTSAC	3 cut(s)	97, 428, 643
TspDTI	ATGAA	4 cut(s)	17, 191, 210, 738
TspRI	CASTG	5 cut(s)	43, 241, 305, 400, 437
VneI	GTGCAC	1 cut(s)	453
XceI	RCATGY	2 cut(s)	444, 489
XmiI	GTMKAC	2 cut(s)	129, 165
XmnI	GAANNNNTTC	2 cut(s)	410, 653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.