Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002655

Physical Location & Seq

Genomic Coordinates Forward (+)

18740621 .. 18743366

Gene Structure 2746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG196200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGTTTCCCACATTAGATGGACTGGAATTTCCAAGGAAGCTTCTTCAATCGACCAATTCTCAATCCTATAATTTAACTACGAGCATTGTTGGTTCAAGCGATGATGATCTGATAGATTGGTACGTCACGCTTACTTTTCTAACGCGTTTGCTTGTCTACGTTACAATTTTAACGTTGCTTGTAGTTGTTGTATACATGATAATGAAGTACATAAGCGATTATGAAGACTTGAGGAGCAGCACAGAGGATGTTTTCGATTACACTGAAAGCAGCCCAGTATTACCGCCGGCCAAGTCAATCCCGGTAACATACGGGACTTGTGATCACTGGGATATCGAATCCGGAAATTGCAGCATCACTAGCTCGTCCGAGGAGTTATACGATGGGAAAATATGTGTGATCTGCTACACTGACCCAAGGAATTGTTTCTTAGTTCCTTGTGGTCACTGCGCTACATGTTATGATTGTGCACAAAGGATCTTTGAAGGGGAAAATAGGACATGTCCAATATGCAGAAGATTGATTAGGAAAGTAAGAAAGTTGTGCGTTGAATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

185

Amino Acids

21.04

Weight (kDa)

4.71

Isoelectric Point (pI)

50.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	130 - 178	4.7e-15	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	131 - 172	5.1e-07	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24204 AT4G24204 AT4G24204
fragaria_vesca	FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_2g33452 FvH4_2g33452 FvH4_2g33452
malus_domestica	MD08G1089900.v1.1 MD15G1074300.v1.1 MD15G1291000.v1.1
prunus_persica	Prupe.1G427200_v2.0.a1 Prupe.6G226000_v2.0.a1
pyrus_communis	pycom02g14610 pycom08g07330 pycom15g06950 pycom15g25460
rosa_chinensis	RchiOBHm_Chr2g0107111 RchiOBHm_Chr6g0309061
rosa_laevigata	RLG00000010593 RLG00000017555
rosa_multiflora	Rmu_sc0002945.1_g000008
rosa_roxburghii	Rroxscaffold_2G00136600
rosa_rugosa	Rorug02G0140300 Rorug06G0369400
rosa_samantha	Rh2AG191200 Rh2BG202900 Rh2CG196200 Rh2DG198400 Rh6AG482100 Rh6BG490900 Rh6CG496000 Rh6DG482600
rosa_wichuraiana	Rw2G015100 Rw6G041970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	156, 192
AccII	CGCG	1 cut(s)	145
AccIII	TCCGGA	1 cut(s)	341
AciI	CCGC	1 cut(s)	284
AclI	AACGTT	1 cut(s)	173
AclWI	GGATC	1 cut(s)	485
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	1 cut(s)	26
AfaI	GTAC	2 cut(s)	122, 209
AflIII	ACRYGT	3 cut(s)	143, 455, 500
AgsI	TTSAA	4 cut(s)	47, 96, 485, 551
AluBI	AGCT	2 cut(s)	40, 363
AluI	AGCT	2 cut(s)	40, 363
Alw21I	GWGCWC	1 cut(s)	472
Alw44I	GTGCAC	1 cut(s)	468
AlwI	GGATC	1 cut(s)	485
Aor13HI	TCCGGA	1 cut(s)	341
AoxI	GGCC	1 cut(s)	288
ApaLI	GTGCAC	1 cut(s)	468
ApeKI	GCWGC	3 cut(s)	237, 270, 351
ApoI	RAATTY	1 cut(s)	26
Asp700I	GAANNNNTTC	1 cut(s)	425
AspLEI	GCGC	1 cut(s)	452
AsuC2I	CCSGG	1 cut(s)	302
BaeGI	GKGCMC	1 cut(s)	472
BbsI	GAAGAC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	472
BbvI	GCAGC	3 cut(s)	249, 282, 363
BccI	CCATC	2 cut(s)	11, 377
BclI	TGATCA	1 cut(s)	322
BcnI	CCSGG	1 cut(s)	302
BfaI	CTAG	1 cut(s)	360
BisI	GCNGC	3 cut(s)	238, 271, 352
BlsI	GCNGC	3 cut(s)	239, 272, 353
Bme1390I	CCNGG	1 cut(s)	302
BmrFI	CCNGG	1 cut(s)	302
BmrI	ACTGGG	2 cut(s)	269, 337
BmsI	GCATC	1 cut(s)	363
BmuI	ACTGGG	2 cut(s)	269, 337
BpiI	GAAGAC	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	250
BpuMI	CCSGG	1 cut(s)	302
BsaBI	GATNNNNATC	1 cut(s)	105
BsaJI	CCNNGG	3 cut(s)	32, 369, 416
BsaWI	WCCGGW	1 cut(s)	341
Bse118I	RCCGGY	1 cut(s)	286
Bse1I	ACTGG	3 cut(s)	27, 275, 332
Bse8I	GATNNNNATC	1 cut(s)	105
BseAI	TCCGGA	1 cut(s)	341
BseDI	CCNNGG	3 cut(s)	32, 369, 416
BseGI	GGATG	1 cut(s)	253
BseJI	GATNNNNATC	1 cut(s)	105
BseNI	ACTGG	3 cut(s)	27, 275, 332
BseRI	GAGGAG	2 cut(s)	247, 386
BseSI	GKGCMC	1 cut(s)	472
BseXI	GCAGC	3 cut(s)	249, 282, 363
Bsh1236I	CGCG	1 cut(s)	145
BshFI	GGCC	1 cut(s)	290
BsiHKAI	GWGCWC	1 cut(s)	472
BsiSI	CCGG	3 cut(s)	287, 302, 342
BslFI	GGGAC	1 cut(s)	328
BsmFI	GGGAC	1 cut(s)	328
BsnI	GGCC	1 cut(s)	290
Bsp1286I	GDGCHC	1 cut(s)	472
Bsp13I	TCCGGA	1 cut(s)	341
Bsp143I	GATC	4 cut(s)	106, 322, 399, 477
BspACI	CCGC	1 cut(s)	284
BspANI	GGCC	1 cut(s)	290
BspEI	TCCGGA	1 cut(s)	341
BspFNI	CGCG	1 cut(s)	145
BspPI	GGATC	1 cut(s)	485
BsrFI	RCCGGY	1 cut(s)	286
BsrI	ACTGG	3 cut(s)	27, 275, 332
BssAI	RCCGGY	1 cut(s)	286
BssECI	CCNNGG	3 cut(s)	32, 369, 416
BssMI	GATC	4 cut(s)	106, 322, 399, 477
BssNAI	GTATAC	1 cut(s)	193
BssT1I	CCWWGG	2 cut(s)	32, 416
Bst1107I	GTATAC	1 cut(s)	193
BstC8I	GCNNGC	1 cut(s)	288
BstDEI	CTNAG	1 cut(s)	430
BstF5I	GGATG	1 cut(s)	253
BstFNI	CGCG	1 cut(s)	145
BstHHI	GCGC	1 cut(s)	452
BstKTI	GATC	4 cut(s)	109, 325, 402, 480
BstMBI	GATC	4 cut(s)	106, 322, 399, 477
BstMWI	GCNNNNNNNGC	1 cut(s)	360
BstNSI	RCATGY	2 cut(s)	459, 504
BstSCI	CCNGG	1 cut(s)	300
BstSLI	GKGCMC	1 cut(s)	472
BstUI	CGCG	1 cut(s)	145
BstV1I	GCAGC	3 cut(s)	249, 282, 363
BstV2I	GAAGAC	1 cut(s)	231
BstX2I	RGATCY	1 cut(s)	477
BstYI	RGATCY	1 cut(s)	477
BstZ17I	GTATAC	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	290
BtgZI	GCGATG	1 cut(s)	114
BtsCI	GGATG	1 cut(s)	253
BtsI	GCAGTG	1 cut(s)	445
BtsIMutI	CAGTG	4 cut(s)	261, 325, 408, 445
Cac8I	GCNNGC	1 cut(s)	288
CfoI	GCGC	1 cut(s)	452
Cfr10I	RCCGGY	1 cut(s)	286
Csp6I	GTAC	2 cut(s)	121, 208
CviAII	CATG	3 cut(s)	196, 456, 501
CviJI	RGCY	4 cut(s)	40, 273, 290, 363
CviKI_1	RGCY	4 cut(s)	40, 273, 290, 363
CviQI	GTAC	2 cut(s)	121, 208
DdeI	CTNAG	1 cut(s)	430
DpnI	GATC	4 cut(s)	108, 324, 401, 479
DpnII	GATC	4 cut(s)	106, 322, 399, 477
EaeI	YGGCCR	1 cut(s)	288
Eco130I	CCWWGG	2 cut(s)	32, 416
Eco32I	GATATC	1 cut(s)	334
EcoRV	GATATC	1 cut(s)	334
EcoT14I	CCWWGG	2 cut(s)	32, 416
ErhI	CCWWGG	2 cut(s)	32, 416
FaeI	CATG	3 cut(s)	199, 459, 504
FaqI	GGGAC	1 cut(s)	328
FatI	CATG	3 cut(s)	195, 455, 500
FbaI	TGATCA	1 cut(s)	322
FblI	GTMKAC	2 cut(s)	156, 192
Fnu4HI	GCNGC	3 cut(s)	238, 271, 352
FokI	GGATG	1 cut(s)	260
Fsp4HI	GCNGC	3 cut(s)	238, 271, 352
FspBI	CTAG	1 cut(s)	360
GlaI	GCGC	1 cut(s)	451
GluI	GCNGC	3 cut(s)	238, 271, 352
HaeIII	GGCC	1 cut(s)	290
HapII	CCGG	3 cut(s)	287, 302, 342
HhaI	GCGC	1 cut(s)	452
Hin1II	CATG	3 cut(s)	199, 459, 504
Hin6I	GCGC	1 cut(s)	450
HinP1I	GCGC	1 cut(s)	450
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	2 cut(s)	338, 551
HpaII	CCGG	3 cut(s)	287, 302, 342
Hpy166II	GTNNAC	3 cut(s)	157, 193, 470
Hpy188I	TCNGA	2 cut(s)	111, 370
Hpy188III	TCNNGA	1 cut(s)	342
Hpy8I	GTNNAC	3 cut(s)	157, 193, 470
HpyAV	CCTTC	1 cut(s)	479
HpyCH4IV	ACGT	3 cut(s)	123, 159, 173
HpyCH4V	TGCA	3 cut(s)	351, 470, 513
HpyF10VI	GCNNNNNNNGC	1 cut(s)	360
HpyF3I	CTNAG	1 cut(s)	430
HpySE526I	ACGT	3 cut(s)	123, 159, 173
Hsp92II	CATG	3 cut(s)	199, 459, 504
HspAI	GCGC	1 cut(s)	450
Kpn2I	TCCGGA	1 cut(s)	341
KroI	GCCGGC	1 cut(s)	286
KroNI	GCCGGC	1 cut(s)	288
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	4 cut(s)	106, 322, 399, 477
LmnI	GCTCC	1 cut(s)	234
LpnPI	CCDG	6 cut(s)	8, 288, 300, 313, 315, 355
Lsp1109I	GCAGC	3 cut(s)	249, 282, 363
LweI	GCATC	1 cut(s)	363
MaeI	CTAG	1 cut(s)	360
MaeII	ACGT	3 cut(s)	123, 159, 173
MaeIII	GTNAC	4 cut(s)	124, 160, 304, 443
MalI	GATC	4 cut(s)	108, 324, 401, 479
MboI	GATC	4 cut(s)	106, 322, 399, 477
MboII	GAAGA	3 cut(s)	35, 236, 528
MflI	RGATCY	1 cut(s)	477
MhlI	GDGCHC	1 cut(s)	472
MluCI	AATT	6 cut(s)	26, 55, 70, 165, 346, 421
MluI	ACGCGT	1 cut(s)	143
MnlI	CCTC	3 cut(s)	225, 238, 364
MroI	TCCGGA	1 cut(s)	341
MroNI	GCCGGC	1 cut(s)	286
MroXI	GAANNNNTTC	1 cut(s)	425
MseI	TTAA	2 cut(s)	74, 170
MslI	CAYNNNNRTG	1 cut(s)	200
MspI	CCGG	3 cut(s)	287, 302, 342
MspR9I	CCNGG	1 cut(s)	302
MvnI	CGCG	1 cut(s)	145
MwoI	GCNNNNNNNGC	1 cut(s)	360
NaeI	GCCGGC	1 cut(s)	288
NciI	CCSGG	1 cut(s)	302
NdeII	GATC	4 cut(s)	106, 322, 399, 477
NgoMIV	GCCGGC	1 cut(s)	286
NlaIII	CATG	3 cut(s)	199, 459, 504
NmuCI	GTSAC	2 cut(s)	124, 443
NspI	RCATGY	2 cut(s)	459, 504
PciI	ACATGT	2 cut(s)	455, 500
PdiI	GCCGGC	1 cut(s)	288
PdmI	GAANNNNTTC	1 cut(s)	425
PfeI	GAWTC	2 cut(s)	338, 551
PkrI	GCNGC	3 cut(s)	239, 272, 353
PscI	ACATGT	2 cut(s)	455, 500
Psp1406I	AACGTT	1 cut(s)	173
PsuI	RGATCY	1 cut(s)	477
RsaI	GTAC	2 cut(s)	122, 209
RsaNI	GTAC	2 cut(s)	121, 208
RseI	CAYNNNNRTG	1 cut(s)	200
SaqAI	TTAA	2 cut(s)	74, 170
SatI	GCNGC	3 cut(s)	238, 271, 352
Sau3AI	GATC	4 cut(s)	106, 322, 399, 477
ScrFI	CCNGG	1 cut(s)	302
SduI	GDGCHC	1 cut(s)	472
SetI	ASST	5 cut(s)	42, 126, 162, 176, 365
SfaNI	GCATC	1 cut(s)	363
SmiMI	CAYNNNNRTG	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	229
SmoI	CTYRAG	1 cut(s)	229
Sse9I	AATT	6 cut(s)	26, 55, 70, 165, 346, 421
SsiI	CCGC	1 cut(s)	284
SspMI	CTAG	1 cut(s)	360
StyD4I	CCNGG	1 cut(s)	300
StyI	CCWWGG	2 cut(s)	32, 416
TaiI	ACGT	3 cut(s)	126, 162, 176
TaqI	TCGA	3 cut(s)	50, 255, 336
TasI	AATT	6 cut(s)	26, 55, 70, 165, 346, 421
TatI	WGTACW	1 cut(s)	207
TfiI	GAWTC	2 cut(s)	338, 551
Tru1I	TTAA	2 cut(s)	74, 170
Tru9I	TTAA	2 cut(s)	74, 170
TscAI	CASTG	4 cut(s)	268, 332, 415, 452
TseFI	GTSAC	2 cut(s)	124, 443
TseI	GCWGC	3 cut(s)	237, 270, 351
Tsp45I	GTSAC	2 cut(s)	124, 443
TspDTI	ATGAA	2 cut(s)	218, 237
TspRI	CASTG	4 cut(s)	268, 332, 415, 452
VneI	GTGCAC	1 cut(s)	468
XapI	RAATTY	1 cut(s)	26
XceI	RCATGY	2 cut(s)	459, 504
XmiI	GTMKAC	2 cut(s)	156, 192
XmnI	GAANNNNTTC	1 cut(s)	425
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.