Zinc finger, C3HC4 type (RING finger)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G24204 AT4G24204 AT4G24204 |
| fragaria_vesca | FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_1g16990 FvH4_2g33452 FvH4_2g33452 FvH4_2g33452 |
| malus_domestica | MD08G1089900.v1.1 MD15G1074300.v1.1 MD15G1291000.v1.1 |
| prunus_persica | Prupe.1G427200_v2.0.a1 Prupe.6G226000_v2.0.a1 |
| pyrus_communis | pycom02g14610 pycom08g07330 pycom15g06950 pycom15g25460 |
| rosa_chinensis | RchiOBHm_Chr2g0107111 RchiOBHm_Chr6g0309061 |
| rosa_laevigata | RLG00000010593 RLG00000017555 |
| rosa_multiflora | Rmu_sc0002945.1_g000008 |
| rosa_roxburghii | Rroxscaffold_2G00136600 |
| rosa_rugosa | Rorug02G0140300 Rorug06G0369400 |
| rosa_samantha | Rh2AG191200 Rh2BG202900 Rh2CG196200 Rh2DG198400 Rh6AG482100 Rh6BG490900 Rh6CG496000 Rh6DG482600 |
| rosa_wichuraiana | Rw2G015100 Rw6G041970 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 320 |
| AccB1I | GGYRCC | 1 cut(s) | 320 |
| AccI | GTMKAC | 1 cut(s) | 180 |
| AccII | CGCG | 1 cut(s) | 133 |
| AccIII | TCCGGA | 1 cut(s) | 329 |
| AciI | CCGC | 1 cut(s) | 272 |
| AcsI | RAATTY | 1 cut(s) | 477 |
| AfaI | GTAC | 4 cut(s) | 110, 197, 322, 346 |
| AflIII | ACRYGT | 2 cut(s) | 131, 500 |
| AgsI | TTSAA | 3 cut(s) | 35, 84, 551 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 413, 445 |
| AluBI | AGCT | 2 cut(s) | 28, 363 |
| AluI | AGCT | 2 cut(s) | 28, 363 |
| Alw21I | GWGCWC | 2 cut(s) | 227, 472 |
| Alw44I | GTGCAC | 1 cut(s) | 468 |
| Aor13HI | TCCGGA | 1 cut(s) | 329 |
| ApaLI | GTGCAC | 1 cut(s) | 468 |
| ApeKI | GCWGC | 3 cut(s) | 258, 339, 351 |
| ApoI | RAATTY | 1 cut(s) | 477 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 425 |
| Asp718I | GGTACC | 1 cut(s) | 320 |
| AsuHPI | GGTGA | 2 cut(s) | 304, 500 |
| AsuII | TTCGAA | 1 cut(s) | 483 |
| BaeGI | GKGCMC | 1 cut(s) | 472 |
| BanI | GGYRCC | 1 cut(s) | 320 |
| BbsI | GAAGAC | 1 cut(s) | 219 |
| Bbv12I | GWGCWC | 2 cut(s) | 227, 472 |
| BbvI | GCAGC | 3 cut(s) | 270, 351, 363 |
| BccI | CCATC | 1 cut(s) | 377 |
| BceAI | ACGGC | 1 cut(s) | 316 |
| BclI | TGATCA | 1 cut(s) | 310 |
| BfaI | CTAG | 4 cut(s) | 11, 348, 360, 556 |
| BfmI | CTRYAG | 1 cut(s) | 228 |
| BisI | GCNGC | 3 cut(s) | 259, 340, 352 |
| BlsI | GCNGC | 3 cut(s) | 260, 341, 353 |
| BmcAI | AGTACT | 1 cut(s) | 346 |
| BmiI | GGNNCC | 2 cut(s) | 322, 435 |
| BmrI | ACTGGG | 1 cut(s) | 257 |
| BmsI | GCATC | 2 cut(s) | 226, 363 |
| BmuI | ACTGGG | 1 cut(s) | 257 |
| BpiI | GAAGAC | 1 cut(s) | 219 |
| Bpu14I | TTCGAA | 1 cut(s) | 483 |
| BsaJI | CCNNGG | 2 cut(s) | 20, 416 |
| BsaWI | WCCGGW | 2 cut(s) | 289, 329 |
| Bse1I | ACTGG | 3 cut(s) | 42, 69, 263 |
| Bse3DI | GCAATG | 1 cut(s) | 161 |
| BseAI | TCCGGA | 1 cut(s) | 329 |
| BseDI | CCNNGG | 2 cut(s) | 20, 416 |
| BseGI | GGATG | 1 cut(s) | 241 |
| BseMI | GCAATG | 1 cut(s) | 161 |
| BseNI | ACTGG | 3 cut(s) | 42, 69, 263 |
| BseRI | GAGGAG | 2 cut(s) | 235, 355 |
| BseSI | GKGCMC | 1 cut(s) | 472 |
| BseXI | GCAGC | 3 cut(s) | 270, 351, 363 |
| Bsh1236I | CGCG | 1 cut(s) | 133 |
| BshNI | GGYRCC | 1 cut(s) | 320 |
| BsiHKAI | GWGCWC | 2 cut(s) | 227, 472 |
| BsiSI | CCGG | 2 cut(s) | 290, 330 |
| Bsp119I | TTCGAA | 1 cut(s) | 483 |
| Bsp1286I | GDGCHC | 2 cut(s) | 227, 472 |
| Bsp13I | TCCGGA | 1 cut(s) | 329 |
| Bsp143I | GATC | 3 cut(s) | 310, 399, 522 |
| BspACI | CCGC | 1 cut(s) | 272 |
| BspEI | TCCGGA | 1 cut(s) | 329 |
| BspFNI | CGCG | 1 cut(s) | 133 |
| BspLI | GGNNCC | 2 cut(s) | 322, 435 |
| BspT104I | TTCGAA | 1 cut(s) | 483 |
| BspT107I | GGYRCC | 1 cut(s) | 320 |
| BsrDI | GCAATG | 1 cut(s) | 161 |
| BsrI | ACTGG | 3 cut(s) | 42, 69, 263 |
| BssECI | CCNNGG | 2 cut(s) | 20, 416 |
| BssMI | GATC | 3 cut(s) | 310, 399, 522 |
| BssNAI | GTATAC | 1 cut(s) | 181 |
| BssT1I | CCWWGG | 2 cut(s) | 20, 416 |
| Bst1107I | GTATAC | 1 cut(s) | 181 |
| Bst4CI | ACNGT | 1 cut(s) | 449 |
| BstBI | TTCGAA | 1 cut(s) | 483 |
| BstC8I | GCNNGC | 2 cut(s) | 141, 276 |
| BstF5I | GGATG | 1 cut(s) | 241 |
| BstFNI | CGCG | 1 cut(s) | 133 |
| BstKTI | GATC | 3 cut(s) | 313, 402, 525 |
| BstMBI | GATC | 3 cut(s) | 310, 399, 522 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 25, 348, 360 |
| BstNSI | RCATGY | 1 cut(s) | 504 |
| BstSFI | CTRYAG | 1 cut(s) | 228 |
| BstSLI | GKGCMC | 1 cut(s) | 472 |
| BstUI | CGCG | 1 cut(s) | 133 |
| BstV1I | GCAGC | 3 cut(s) | 270, 351, 363 |
| BstV2I | GAAGAC | 1 cut(s) | 219 |
| BstZ17I | GTATAC | 1 cut(s) | 181 |
| BtgZI | GCGATG | 1 cut(s) | 102 |
| BtsCI | GGATG | 1 cut(s) | 241 |
| BtsIMutI | CAGTG | 2 cut(s) | 408, 445 |
| Cac8I | GCNNGC | 2 cut(s) | 141, 276 |
| Csp6I | GTAC | 4 cut(s) | 109, 196, 321, 345 |
| CviAII | CATG | 2 cut(s) | 184, 501 |
| CviJI | RGCY | 3 cut(s) | 28, 261, 363 |
| CviKI_1 | RGCY | 3 cut(s) | 28, 261, 363 |
| CviQI | GTAC | 4 cut(s) | 109, 196, 321, 345 |
| DpnI | GATC | 3 cut(s) | 312, 401, 524 |
| DpnII | GATC | 3 cut(s) | 310, 399, 522 |
| Eco130I | CCWWGG | 2 cut(s) | 20, 416 |
| EcoT14I | CCWWGG | 2 cut(s) | 20, 416 |
| ErhI | CCWWGG | 2 cut(s) | 20, 416 |
| FaeI | CATG | 2 cut(s) | 187, 504 |
| FatI | CATG | 2 cut(s) | 183, 500 |
| FbaI | TGATCA | 1 cut(s) | 310 |
| FblI | GTMKAC | 1 cut(s) | 180 |
| Fnu4HI | GCNGC | 3 cut(s) | 259, 340, 352 |
| FokI | GGATG | 1 cut(s) | 248 |
| Fsp4HI | GCNGC | 3 cut(s) | 259, 340, 352 |
| FspBI | CTAG | 4 cut(s) | 11, 348, 360, 556 |
| GluI | GCNGC | 3 cut(s) | 259, 340, 352 |
| HapII | CCGG | 2 cut(s) | 290, 330 |
| Hin1II | CATG | 2 cut(s) | 187, 504 |
| HindIII | AAGCTT | 1 cut(s) | 26 |
| HinfI | GANTC | 2 cut(s) | 326, 551 |
| HpaII | CCGG | 2 cut(s) | 290, 330 |
| HphI | GGTGA | 2 cut(s) | 304, 500 |
| Hpy166II | GTNNAC | 2 cut(s) | 181, 470 |
| Hpy188I | TCNGA | 2 cut(s) | 63, 370 |
| Hpy188III | TCNNGA | 2 cut(s) | 330, 526 |
| Hpy8I | GTNNAC | 2 cut(s) | 181, 470 |
| Hpy99I | CGWCG | 1 cut(s) | 374 |
| HpyAV | CCTTC | 1 cut(s) | 479 |
| HpyCH4III | ACNGT | 1 cut(s) | 449 |
| HpyCH4V | TGCA | 5 cut(s) | 143, 278, 339, 470, 513 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 25, 348, 360 |
| Hsp92II | CATG | 2 cut(s) | 187, 504 |
| Kpn2I | TCCGGA | 1 cut(s) | 329 |
| KpnI | GGTACC | 1 cut(s) | 324 |
| Ksp22I | TGATCA | 1 cut(s) | 310 |
| Kzo9I | GATC | 3 cut(s) | 310, 399, 522 |
| LmnI | GCTCC | 2 cut(s) | 222, 368 |
| LpnPI | CCDG | 6 cut(s) | 55, 82, 276, 288, 303, 343 |
| Lsp1109I | GCAGC | 3 cut(s) | 270, 351, 363 |
| LweI | GCATC | 2 cut(s) | 226, 363 |
| MaeI | CTAG | 4 cut(s) | 11, 348, 360, 556 |
| MaeIII | GTNAC | 3 cut(s) | 203, 292, 443 |
| MalI | GATC | 3 cut(s) | 312, 401, 524 |
| MboI | GATC | 3 cut(s) | 310, 399, 522 |
| MboII | GAAGA | 3 cut(s) | 23, 224, 528 |
| MhlI | GDGCHC | 2 cut(s) | 227, 472 |
| MluCI | AATT | 6 cut(s) | 14, 153, 285, 334, 421, 477 |
| MluI | ACGCGT | 1 cut(s) | 131 |
| MmeI | TCCRAC | 1 cut(s) | 393 |
| MnlI | CCTC | 3 cut(s) | 213, 226, 376 |
| MroI | TCCGGA | 1 cut(s) | 329 |
| MroXI | GAANNNNTTC | 1 cut(s) | 425 |
| MseI | TTAA | 1 cut(s) | 158 |
| MslI | CAYNNNNRTG | 1 cut(s) | 188 |
| MspI | CCGG | 2 cut(s) | 290, 330 |
| MvnI | CGCG | 1 cut(s) | 133 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 25, 348, 360 |
| NdeII | GATC | 3 cut(s) | 310, 399, 522 |
| NlaIII | CATG | 2 cut(s) | 187, 504 |
| NlaIV | GGNNCC | 2 cut(s) | 322, 435 |
| NmuCI | GTSAC | 3 cut(s) | 203, 292, 443 |
| NspI | RCATGY | 1 cut(s) | 504 |
| NspV | TTCGAA | 1 cut(s) | 483 |
| PciI | ACATGT | 1 cut(s) | 500 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 378 |
| PdmI | GAANNNNTTC | 1 cut(s) | 425 |
| PfeI | GAWTC | 2 cut(s) | 326, 551 |
| PkrI | GCNGC | 3 cut(s) | 260, 341, 353 |
| PscI | ACATGT | 1 cut(s) | 500 |
| PspN4I | GGNNCC | 2 cut(s) | 322, 435 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 64, 96 |
| RsaI | GTAC | 4 cut(s) | 110, 197, 322, 346 |
| RsaNI | GTAC | 4 cut(s) | 109, 196, 321, 345 |
| RseI | CAYNNNNRTG | 1 cut(s) | 188 |
| SaqAI | TTAA | 1 cut(s) | 158 |
| SatI | GCNGC | 3 cut(s) | 259, 340, 352 |
| Sau3AI | GATC | 3 cut(s) | 310, 399, 522 |
| ScaI | AGTACT | 1 cut(s) | 346 |
| SduI | GDGCHC | 2 cut(s) | 227, 472 |
| SetI | ASST | 4 cut(s) | 30, 322, 365, 490 |
| SfaNI | GCATC | 2 cut(s) | 226, 363 |
| SfcI | CTRYAG | 1 cut(s) | 228 |
| SfuI | TTCGAA | 1 cut(s) | 483 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 188 |
| Sse9I | AATT | 6 cut(s) | 14, 153, 285, 334, 421, 477 |
| SsiI | CCGC | 1 cut(s) | 272 |
| SspMI | CTAG | 4 cut(s) | 11, 348, 360, 556 |
| StyI | CCWWGG | 2 cut(s) | 20, 416 |
| TaaI | ACNGT | 1 cut(s) | 449 |
| TaqI | TCGA | 2 cut(s) | 38, 483 |
| TasI | AATT | 6 cut(s) | 14, 153, 285, 334, 421, 477 |
| TatI | WGTACW | 2 cut(s) | 195, 344 |
| TfiI | GAWTC | 2 cut(s) | 326, 551 |
| Tru1I | TTAA | 1 cut(s) | 158 |
| Tru9I | TTAA | 1 cut(s) | 158 |
| TscAI | CASTG | 2 cut(s) | 415, 452 |
| TseFI | GTSAC | 3 cut(s) | 203, 292, 443 |
| TseI | GCWGC | 3 cut(s) | 258, 339, 351 |
| Tsp45I | GTSAC | 3 cut(s) | 203, 292, 443 |
| TspDTI | ATGAA | 3 cut(s) | 88, 206, 225 |
| TspRI | CASTG | 2 cut(s) | 415, 452 |
| VneI | GTGCAC | 1 cut(s) | 468 |
| XapI | RAATTY | 1 cut(s) | 477 |
| XceI | RCATGY | 1 cut(s) | 504 |
| XmiI | GTMKAC | 1 cut(s) | 180 |
| XmnI | GAANNNNTTC | 1 cut(s) | 425 |
| XspI | CTAG | 4 cut(s) | 11, 348, 360, 556 |
| ZrmI | AGTACT | 1 cut(s) | 346 |