AT4G24270

Squamous cell carcinoma antigen recognized by T-cells

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0004707
Physical Location & Seq
Reverse (-)
12581518 .. 12587458
5941 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G24270.2

Sequence Viewer

Length: 2451 bp
ATGATGGCTGATGACACTGAACTCGTCAGTAACACTGACCAGAAGATGGAAGACGCTTCAGCCGAAAACCCTGCCCGAGCTGATCCCCCCTCATCGGATGATTCCGGCGATTCTGATTCCGACTCAGAAGATGAAGCCGAGTCGAATCAGCAGATTGTAACCTTGGAGTCGGAGCTCTCCGCTAATCCTTACAACTACGATGCTTATGTCCAATACATTAAGCTTCTCAGGAAAACAGCCAACCTTGAAAAGCTAAGACAAGCAAGGGAAGCTATGAGTGCCATATTTCCGTTGAGTCCTTCCTTGTGGCTTGAATGGGCAAGGGATGAAGCGTCTTTAGCCGCTAGTGAGAATGTGCCTGAAATTGTGATGCTTTATGAACGGGGACTTTCTGATTATCAGTCTGTATCTCTTTGGTGTGACTACCTGAGCTTTATGCTAGAATTTGATCCATCAGTGCGTGGATACCCATCTGAAGGTATTTCCAAAATGCGGAGTCTTTTTGAACGTGCTATTCCGGCTGCGGGCTTCCATGTTACTGAAGGCAATAGAATATGGGAAGGATATAGAGAATTTGAGCAAGGTGTCTTAGCCACTATCGACGAGGCTGACATTGAGGAGAGAAATAAGCAGATACAAAGGATCAGAAGCATATTCCACCGTCACCTGTCTGTTCCTCTAGAAAACTTGAGCTCCACCCTTATTGCTTACAAGACTTGGGAGTTGGAACAGGGCATTGACCTTGATATTGGATCTGATGATTTGAGTAAGGTTTCTCATCAGGTTGCTGTTGCAAACAAGAAGGCACAGCAGATGTATAGTGAACGTGCCCATCTTGAAGAAAACATATCTAAGCAAGATTTATCTGACACGGAAAAGTTTCAGGAATTCATGAATTATATAAAGTTTGAGAAGACTTCTGGAGATCCTACCCGAGTTCAAGCTATATATGAACGTGCTGTGGCTGAATACCCGGTTTCAAGTGACTTGTGGATAGACTACACCGTGTATCTTGATAAAACTTTGAAGGTTGGAAAAGCTATAACGCATGCCTATTCTAGGGCGACTAGAAGTTGTCCATGGACTGGAGATCTTTGGGCACGTTATTTACTTGCTTTAGAGCGTGGTTCTGCATCCGAGAAAGAGATTTATGATGTCTTTGAGAAGTCATTGCAGTGCACATTTTCCTCCTTTGAAGAGTACCTGGATTTATACCTCACTCGAGTAGATGGCCTGAGAAGGAGAATGTTATCAACTAGGATGCTAGAGGCTTTGGACTATTCTCTGATAAGAGAAACTTTTCAGCAAGCATCAGATTACCTAACGCCTCACATGCAAAATACAGACAGTTTGCTACATTTGCATACTTATTGGGCTAACTTGGAACTTAATATTGGAAAAGATCTAGCTGGCGCACGAGGTGTTTGGGATAGCTTTCTGAAGAAGAGTGGTGGGATGCTAGCAGCCTGGCATGCATACATTGATATGGAAGTGCATTTGGGGCATATAAAGGAAGCTAGGTCTATTTACCGGAGGTGCTATACAAGAAAGTTTGATGGAACTGGCTCAGAAGACATATGCAAAGGATGGTTGCGCTTTGAGAGGGAGCATGGGGATTTGGAACATTTTGACCTAGCAGTTCAAAAGGTTATGCCACGCTTGGAAGAGCTACAATTGATGAGGTTACAACAAGAGTCTACACCAGTCAAACCGTCAGCTGGTCTGAAAGAGCATAGCTCACAAAAGAGAAAAGCAGAACAGAATGTAGAAGAAGAGTCTTTGGCTAAGCGGCAGAAGAGGAAAAGTCAAAAAGAAGTGGACCTAGGTGGTCAGAGTGCAACTGTACCAGCAACAAAAAACGTTAAAGCAGAGAATGGAAAAACAGCTGATTCAGATAAAGAAGAGACAGAAGATGCCAAACCACTGAAGCCGAAAGTTTATAGAGACGAGTGTACAGCTTTTATTTCGAATCTCAGTGTCAAGGCACAAGAGGAAGATATACGTAAATTCTTTGGTGATGATGGTGGGGTTGATTCCATTCGCATTCTCCATCACAAAGACACTGGAAAACCAAGGGGACTGGCATATGCTGATTTTGTGGATGATGAACACCTTGCAGCAGCTATAGCAAAGAACAGAAAGATGTTTTTTGGTAAGAAGATCAGCATAGCACGGTCAAATCCAAAGAAGGGTAAAAAAGAATTCACTCGGCGTGGAAATGATGGTTCTGGGAATTCAAAGGACCCTTCCCTGATTTCTGAGAAGGCGAAAGCACCACTTGGTGGAGAAACTGAGGGTGAAAGGAAAGGAAATGAAGTGGAAGTGAGGGGTAAGAACACGTTTGCTGTCCCAAGAAATGTTAAACCACTCGGCTACACGACACCTAAACCCAGCGCAGATGAGACACCAAAATCAAATGATGAGTTCAGGAATATGTTCCTTAAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lsm_interact RRM_1 Suf

Protein Analysis

816

Amino Acids

92.77

Weight (kDa)

5.53

Isoelectric Point (pI)

41.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Suf PF05843 51 - 544 6.9e-35 Suppressor of forked protein (Suf)
HAT_Syf1_CNRKL1_N PF23233 54 - 195 4.8e-09 Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_PRP39_N PF23240 57 - 238 7.6e-19 PRP39 N-terminal HAT repeat
HAT_Syf1_CNRKL1_C PF23231 203 - 588 2.2e-06 Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
HAT_Syf1_CNRKL1_N PF23233 289 - 343 4.1e-06 Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_PRP39_C PF23241 290 - 357 3e-09 PRP39 C-terminal HAT repeat
HAT_PRP39_N PF23240 298 - 403 1.5e-10 PRP39 N-terminal HAT repeat
RRM_1 PF00076 654 - 721 4.6e-11 RNA recognition motif
Lsm_interact PF05391 798 - 816 3.7e-08 Lsm interaction motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 46, 1085, 2282
AccI GTMKAC 1 cut(s) 1697
AciI CCGC 5 cut(s) 180, 342, 493, 524, 1789
AclI AACGTT 1 cut(s) 1860
AclWI GGATC 5 cut(s) 77, 443, 650, 760, 920
AcsI RAATTY 6 cut(s) 443, 572, 887, 2006, 2201, 2233
AcuI CTGAAG 5 cut(s) 42, 495, 561, 1460, 1946
AdeI CACNNNGTG 2 cut(s) 1421, 2282
AfaI GTAC 3 cut(s) 1202, 1845, 1954
AflIII ACRYGT 1 cut(s) 2337
AjnI CCWGG 2 cut(s) 1203, 1466
AjuI GAANNNNNNNTTGG 2 cut(s) 1377, 1409
Alw21I GWGCWC 3 cut(s) 177, 695, 1181
Alw26I GTCTC 3 cut(s) 1898, 1938, 2396
Alw44I GTGCAC 1 cut(s) 1177
AlwI GGATC 5 cut(s) 77, 443, 650, 760, 920
Ama87I CYCGRG 3 cut(s) 75, 933, 1221
AoxI GGCC 1 cut(s) 1231
ApaLI GTGCAC 1 cut(s) 1177
ApeKI GCWGC 4 cut(s) 521, 1463, 2117, 2120
ApoI RAATTY 6 cut(s) 443, 572, 887, 2006, 2201, 2233
Asp700I GAANNNNTTC 3 cut(s) 879, 1299, 2435
AspA2I CCTAGG 1 cut(s) 1822
AspLEI GCGC 3 cut(s) 1415, 1596, 2396
AspS9I GGNCC 2 cut(s) 1819, 2242
AsuC2I CCSGG 1 cut(s) 974
AsuHPI GGTGA 3 cut(s) 656, 2027, 2309
AsuII TTCGAA 1 cut(s) 1967
AsuNHI GCTAGC 1 cut(s) 1459
AvaI CYCGRG 3 cut(s) 75, 933, 1221
AvaII GGWCC 2 cut(s) 1819, 2242
AvrII CCTAGG 1 cut(s) 1822
BaeGI GKGCMC 3 cut(s) 832, 1102, 1181
BanII GRGCYC 2 cut(s) 177, 695
BauI CACGAG 1 cut(s) 1416
BbsI GAAGAC 3 cut(s) 57, 920, 1578
Bbv12I GWGCWC 3 cut(s) 177, 695, 1181
BbvI GCAGC 4 cut(s) 508, 1475, 2129, 2132
BcgI CGANNNNNNTGC 2 cut(s) 53, 87
BciT130I CCWGG 2 cut(s) 1205, 1468
BciVI GTATCC 1 cut(s) 458
BcnI CCSGG 1 cut(s) 974
BcoDI GTCTC 3 cut(s) 1898, 1938, 2396
BfmI CTRYAG 1 cut(s) 2124
BfuI GTATCC 1 cut(s) 458
BglII AGATCT 2 cut(s) 1090, 1402
BisI GCNGC 6 cut(s) 342, 522, 1464, 1790, 2118, 2121
BlnI CCTAGG 1 cut(s) 1822
BlpI GCTNAGC 1 cut(s) 1785
BlsI GCNGC 6 cut(s) 343, 523, 1465, 1791, 2119, 2122
Bme1390I CCNGG 3 cut(s) 974, 1205, 1468
Bme18I GGWCC 2 cut(s) 1819, 2242
BmeT110I CYCGRG 3 cut(s) 75, 933, 1221
BmgT120I GGNCC 2 cut(s) 1819, 2242
BmiI GGNNCC 1 cut(s) 2244
BmrFI CCNGG 3 cut(s) 974, 1205, 1468
BmsI GCATC 7 cut(s) 190, 360, 1142, 1251, 1319, 1446, 1903
BmtI GCTAGC 1 cut(s) 1463
BpiI GAAGAC 3 cut(s) 57, 920, 1578
BplI GAGNNNNNCTC 2 cut(s) 1721, 1753
BpmI CTGGAG 2 cut(s) 942, 1107
Bpu10I CCTNAGC 1 cut(s) 428
Bpu1102I GCTNAGC 1 cut(s) 1785
Bpu14I TTCGAA 1 cut(s) 1967
BpuEI CTTGAG 1 cut(s) 709
BpuMI CCSGG 1 cut(s) 974
BsaAI YACGTR 1 cut(s) 2003
BsaBI GATNNNNATC 1 cut(s) 469
BsaJI CCNNGG 4 cut(s) 162, 1079, 1822, 2072
BsaWI WCCGGW 1 cut(s) 1530
BsaXI ACNNNNNCTCC 2 cut(s) 677, 707
Bse1I ACTGG 5 cut(s) 1090, 1567, 1703, 2068, 2085
Bse3DI GCAATG 1 cut(s) 1169
Bse8I GATNNNNATC 1 cut(s) 469
BseBI CCWGG 2 cut(s) 1205, 1468
BseDI CCNNGG 4 cut(s) 162, 1079, 1822, 2072
BseGI GGATG 7 cut(s) 103, 331, 1133, 1266, 1461, 1592, 2107
BseJI GATNNNNATC 1 cut(s) 469
BseMI GCAATG 1 cut(s) 1169
BseMII CTCAG 8 cut(s) 138, 241, 419, 1226, 1581, 1987, 2250, 2283
BseNI ACTGG 5 cut(s) 1090, 1567, 1703, 2068, 2085
BseRI GAGGAG 1 cut(s) 632
BseSI GKGCMC 3 cut(s) 832, 1102, 1181
BseXI GCAGC 4 cut(s) 508, 1475, 2129, 2132
BseYI CCCAGC 1 cut(s) 2390
BshFI GGCC 1 cut(s) 1233
BsiHKAI GWGCWC 3 cut(s) 177, 695, 1181
BsiHKCI CYCGRG 3 cut(s) 75, 933, 1221
BsiSI CCGG 4 cut(s) 105, 518, 974, 1531
BslFI GGGAC 3 cut(s) 399, 2091, 2333
BsmAI GTCTC 3 cut(s) 1898, 1938, 2396
BsmBI CGTCTC 1 cut(s) 1938
BsmFI GGGAC 3 cut(s) 399, 2091, 2333
BsmI GAATGC 1 cut(s) 2043
BsnI GGCC 1 cut(s) 1233
BsoBI CYCGRG 3 cut(s) 75, 933, 1221
Bsp119I TTCGAA 1 cut(s) 1967
Bsp1286I GDGCHC 5 cut(s) 177, 695, 832, 1102, 1181
Bsp1407I TGTACA 1 cut(s) 1952
Bsp143I GATC 8 cut(s) 82, 448, 642, 752, 925, 1090, 1402, 2160
Bsp1720I GCTNAGC 1 cut(s) 1785
Bsp19I CCATGG 1 cut(s) 1079
BspACI CCGC 5 cut(s) 180, 342, 493, 524, 1789
BspANI GGCC 1 cut(s) 1233
BspCNI CTCAG 8 cut(s) 137, 240, 420, 1227, 1580, 1986, 2251, 2284
BspHI TCATGA 1 cut(s) 891
BspLI GGNNCC 1 cut(s) 2244
BspOI GCTAGC 1 cut(s) 1463
BspPI GGATC 5 cut(s) 77, 443, 650, 760, 920
BspQI GCTCTTC 1 cut(s) 1659
BspT104I TTCGAA 1 cut(s) 1967
BsrDI GCAATG 1 cut(s) 1169
BsrGI TGTACA 1 cut(s) 1952
BsrI ACTGG 5 cut(s) 1090, 1567, 1703, 2068, 2085
BssECI CCNNGG 4 cut(s) 162, 1079, 1822, 2072
BssMI GATC 8 cut(s) 82, 448, 642, 752, 925, 1090, 1402, 2160
BssSI CACGAG 1 cut(s) 1416
BssT1I CCWWGG 4 cut(s) 162, 1079, 1822, 2072
Bst2BI CACGAG 1 cut(s) 1416
Bst2UI CCWGG 2 cut(s) 1205, 1468
Bst4CI ACNGT 6 cut(s) 662, 1006, 1349, 1713, 1843, 2175
Bst6I CTCTTC 6 cut(s) 1191, 1439, 1659, 1767, 1790, 1896
BstAUI TGTACA 1 cut(s) 1952
BstBAI YACGTR 1 cut(s) 2003
BstBI TTCGAA 1 cut(s) 1967
BstC8I GCNNGC 6 cut(s) 526, 1050, 1308, 1411, 1461, 1473
BstDSI CCRYGG 1 cut(s) 1079
BstENI CCTNNNNNAGG 1 cut(s) 1057
BstF5I GGATG 7 cut(s) 103, 331, 1133, 1266, 1461, 1592, 2107
BstHHI GCGC 3 cut(s) 1415, 1596, 2396
BstKTI GATC 8 cut(s) 85, 451, 645, 755, 928, 1093, 1405, 2163
BstMAI GTCTC 3 cut(s) 1898, 1938, 2396
BstMBI GATC 8 cut(s) 82, 448, 642, 752, 925, 1090, 1402, 2160
BstMWI GCNNNNNNNGC 9 cut(s) 269, 278, 338, 518, 1333, 1360, 1472, 1501, 2126
BstNI CCWGG 2 cut(s) 1205, 1468
BstNSI RCATGY 3 cut(s) 1052, 1336, 1475
BstSCI CCNGG 3 cut(s) 972, 1203, 1466
BstSFI CTRYAG 1 cut(s) 2124
BstSLI GKGCMC 3 cut(s) 832, 1102, 1181
BstSNI TACGTA 1 cut(s) 2003
BstV1I GCAGC 4 cut(s) 508, 1475, 2129, 2132
BstV2I GAAGAC 3 cut(s) 57, 920, 1578
BstX2I RGATCY 4 cut(s) 752, 925, 1090, 1402
BstYI RGATCY 4 cut(s) 752, 925, 1090, 1402
BsuI GTATCC 1 cut(s) 458
BsuRI GGCC 1 cut(s) 1233
BtgI CCRYGG 1 cut(s) 1079
BtsCI GGATG 7 cut(s) 103, 331, 1133, 1266, 1461, 1592, 2107
BtsI GCAGTG 1 cut(s) 1181
BtsIMutI CAGTG 7 cut(s) 15, 33, 462, 1181, 1922, 1981, 2061
Cac8I GCNNGC 6 cut(s) 526, 1050, 1308, 1411, 1461, 1473
CciI TCATGA 1 cut(s) 891
CfoI GCGC 3 cut(s) 1415, 1596, 2396
Cfr13I GGNCC 2 cut(s) 1819, 2242
CseI GACGC 2 cut(s) 62, 321
Csp6I GTAC 3 cut(s) 1201, 1844, 1953
CspCI CAANNNNNGTGG 2 cut(s) 685, 720
CviAII CATG 7 cut(s) 533, 892, 1049, 1080, 1333, 1472, 1610
CviQI GTAC 3 cut(s) 1201, 1844, 1953
DpnI GATC 8 cut(s) 84, 450, 644, 754, 927, 1092, 1404, 2162
DpnII GATC 8 cut(s) 82, 448, 642, 752, 925, 1090, 1402, 2160
DraIII CACNNNGTG 2 cut(s) 1421, 2282
Eam1104I CTCTTC 6 cut(s) 1191, 1439, 1659, 1767, 1790, 1896
EarI CTCTTC 6 cut(s) 1191, 1439, 1659, 1767, 1790, 1896
Ecl136II GAGCTC 2 cut(s) 175, 693
Eco105I TACGTA 1 cut(s) 2003
Eco130I CCWWGG 4 cut(s) 162, 1079, 1822, 2072
Eco24I GRGCYC 2 cut(s) 177, 695
Eco47I GGWCC 2 cut(s) 1819, 2242
Eco53kI GAGCTC 2 cut(s) 175, 693
Eco57I CTGAAG 5 cut(s) 42, 495, 561, 1460, 1946
Eco88I CYCGRG 3 cut(s) 75, 933, 1221
EcoICRI GAGCTC 2 cut(s) 175, 693
EcoNI CCTNNNNNAGG 1 cut(s) 1057
EcoO109I RGGNCCY 1 cut(s) 2242
EcoRI GAATTC 3 cut(s) 887, 2201, 2233
EcoRII CCWGG 2 cut(s) 1203, 1466
EcoT14I CCWWGG 4 cut(s) 162, 1079, 1822, 2072
EcoT22I ATGCAT 1 cut(s) 1477
EcoT38I GRGCYC 2 cut(s) 177, 695
ErhI CCWWGG 4 cut(s) 162, 1079, 1822, 2072
Esp3I CGTCTC 1 cut(s) 1938
FaeI CATG 7 cut(s) 536, 895, 1052, 1083, 1336, 1475, 1613
FalI AAGNNNNNCTT 4 cut(s) 1282, 1314, 2262, 2294
FaqI GGGAC 3 cut(s) 399, 2091, 2333
FatI CATG 7 cut(s) 532, 891, 1048, 1079, 1332, 1471, 1609
FauI CCCGC 1 cut(s) 517
FauNDI CATATG 2 cut(s) 1577, 2086
FblI GTMKAC 1 cut(s) 1697
Fnu4HI GCNGC 6 cut(s) 342, 522, 1464, 1790, 2118, 2121
FokI GGATG 7 cut(s) 110, 338, 1120, 1273, 1468, 1599, 2114
FriOI GRGCYC 2 cut(s) 177, 695
Fsp4HI GCNGC 6 cut(s) 342, 522, 1464, 1790, 2118, 2121
GlaI GCGC 3 cut(s) 1414, 1595, 2395
GluI GCNGC 6 cut(s) 342, 522, 1464, 1790, 2118, 2121
GsaI CCCAGC 1 cut(s) 2394
GsuI CTGGAG 2 cut(s) 942, 1107
HaeIII GGCC 1 cut(s) 1233
HapII CCGG 4 cut(s) 105, 518, 974, 1531
HgaI GACGC 2 cut(s) 62, 321
HhaI GCGC 3 cut(s) 1415, 1596, 2396
Hin1II CATG 7 cut(s) 536, 895, 1052, 1083, 1336, 1475, 1613
Hin6I GCGC 3 cut(s) 1413, 1594, 2394
HinP1I GCGC 3 cut(s) 1413, 1594, 2394
HindIII AAGCTT 1 cut(s) 221
HpaII CCGG 4 cut(s) 105, 518, 974, 1531
HphI GGTGA 3 cut(s) 656, 2027, 2309
Hpy166II GTNNAC 5 cut(s) 824, 1179, 1698, 1819, 1953
Hpy188III TCNNGA 8 cut(s) 229, 680, 836, 884, 892, 921, 1013, 2428
Hpy8I GTNNAC 5 cut(s) 824, 1179, 1698, 1819, 1953
Hpy99I CGWCG 1 cut(s) 605
HpyCH4III ACNGT 6 cut(s) 662, 1006, 1349, 1713, 1843, 2175
HpyCH4IV ACGT 7 cut(s) 508, 826, 955, 1102, 1860, 2002, 2339
HpyF10VI GCNNNNNNNGC 9 cut(s) 269, 278, 338, 518, 1333, 1360, 1472, 1501, 2126
HpySE526I ACGT 7 cut(s) 508, 826, 955, 1102, 1860, 2002, 2339
Hsp92II CATG 7 cut(s) 536, 895, 1052, 1083, 1336, 1475, 1613
HspAI GCGC 3 cut(s) 1413, 1594, 2394
Kzo9I GATC 8 cut(s) 82, 448, 642, 752, 925, 1090, 1402, 2160
LguI GCTCTTC 1 cut(s) 1659
LmnI GCTCC 3 cut(s) 172, 698, 1606
Lsp1109I GCAGC 4 cut(s) 508, 1475, 2129, 2132
LweI GCATC 7 cut(s) 190, 360, 1142, 1251, 1319, 1446, 1903
MaeII ACGT 7 cut(s) 508, 826, 955, 1102, 1860, 2002, 2339
MaeIII GTNAC 7 cut(s) 29, 157, 419, 535, 662, 983, 1683
MalI GATC 8 cut(s) 84, 450, 644, 754, 927, 1092, 1404, 2162
MboI GATC 8 cut(s) 82, 448, 642, 752, 925, 1090, 1402, 2160
MfeI CAATTG 1 cut(s) 1673
MflI RGATCY 4 cut(s) 752, 925, 1090, 1402
MhlI GDGCHC 5 cut(s) 177, 695, 832, 1102, 1181
MluCI AATT 9 cut(s) 363, 443, 572, 887, 895, 1673, 2006, 2201, 2233
MlyI GAGTC 7 cut(s) 116, 149, 176, 304, 505, 1703, 1784
MmeI TCCRAC 4 cut(s) 144, 150, 705, 1012
Mph1103I ATGCAT 1 cut(s) 1477
MroXI GAANNNNTTC 3 cut(s) 879, 1299, 2435
MseI TTAA 5 cut(s) 219, 1389, 1863, 2361, 2442
MslI CAYNNNNRTG 2 cut(s) 1174, 1484
MspA1I CMGCKG 2 cut(s) 1718, 1886
MspI CCGG 4 cut(s) 105, 518, 974, 1531
MspR9I CCNGG 3 cut(s) 974, 1205, 1468
MunI CAATTG 1 cut(s) 1673
Mva1269I GAATGC 1 cut(s) 2043
MvaI CCWGG 2 cut(s) 1205, 1468
MwoI GCNNNNNNNGC 9 cut(s) 269, 278, 338, 518, 1333, 1360, 1472, 1501, 2126
NciI CCSGG 1 cut(s) 974
NcoI CCATGG 1 cut(s) 1079
NdeI CATATG 2 cut(s) 1577, 2086
NdeII GATC 8 cut(s) 82, 448, 642, 752, 925, 1090, 1402, 2160
NheI GCTAGC 1 cut(s) 1459
NlaIII CATG 7 cut(s) 536, 895, 1052, 1083, 1336, 1475, 1613
NlaIV GGNNCC 1 cut(s) 2244
NmeAIII GCCGAG 3 cut(s) 163, 2188, 2349
NmuCI GTSAC 3 cut(s) 419, 662, 983
NsiI ATGCAT 1 cut(s) 1477
NspI RCATGY 3 cut(s) 1052, 1336, 1475
NspV TTCGAA 1 cut(s) 1967
PaeI GCATGC 2 cut(s) 1052, 1475
PaeR7I CTCGAG 1 cut(s) 1221
PagI TCATGA 1 cut(s) 891
PciSI GCTCTTC 1 cut(s) 1659
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PctI GAATGC 1 cut(s) 2043
PdmI GAANNNNTTC 3 cut(s) 879, 1299, 2435
PfeI GAWTC 7 cut(s) 101, 110, 116, 145, 1889, 1969, 2033
PflMI CCANNNNNTGG 3 cut(s) 46, 1085, 2282
PkrI GCNGC 6 cut(s) 343, 523, 1465, 1791, 2119, 2122
PleI GAGTC 7 cut(s) 116, 148, 175, 303, 504, 1702, 1783
PpsI GAGTC 7 cut(s) 116, 148, 175, 303, 504, 1702, 1783
Ppu21I YACGTR 1 cut(s) 2003
PpuMI RGGWCCY 1 cut(s) 2242
Psp124BI GAGCTC 2 cut(s) 177, 695
Psp1406I AACGTT 1 cut(s) 1860
Psp5II RGGWCCY 1 cut(s) 2242
Psp6I CCWGG 2 cut(s) 1203, 1466
PspFI CCCAGC 1 cut(s) 2390
PspGI CCWGG 2 cut(s) 1203, 1466
PspN4I GGNNCC 1 cut(s) 2244
PspPI GGNCC 2 cut(s) 1819, 2242
PspPPI RGGWCCY 1 cut(s) 2242
PspXI VCTCGAGB 1 cut(s) 1221
PsuI RGATCY 4 cut(s) 752, 925, 1090, 1402
PvuII CAGCTG 2 cut(s) 1718, 1886
RsaI GTAC 3 cut(s) 1202, 1845, 1954
RsaNI GTAC 3 cut(s) 1201, 1844, 1953
RseI CAYNNNNRTG 2 cut(s) 1174, 1484
SacI GAGCTC 2 cut(s) 177, 695
SapI GCTCTTC 1 cut(s) 1659
SaqAI TTAA 5 cut(s) 219, 1389, 1863, 2361, 2442
SatI GCNGC 6 cut(s) 342, 522, 1464, 1790, 2118, 2121
Sau3AI GATC 8 cut(s) 82, 448, 642, 752, 925, 1090, 1402, 2160
Sau96I GGNCC 2 cut(s) 1819, 2242
SchI GAGTC 7 cut(s) 116, 149, 176, 304, 505, 1703, 1784
ScrFI CCNGG 3 cut(s) 974, 1205, 1468
SduI GDGCHC 5 cut(s) 177, 695, 832, 1102, 1181
SfaNI GCATC 7 cut(s) 190, 360, 1142, 1251, 1319, 1446, 1903
SfcI CTRYAG 1 cut(s) 2124
Sfr274I CTCGAG 1 cut(s) 1221
SfuI TTCGAA 1 cut(s) 1967
SinI GGWCC 2 cut(s) 1819, 2242
SlaI CTCGAG 1 cut(s) 1221
SmiMI CAYNNNNRTG 2 cut(s) 1174, 1484
SmlI CTYRAG 2 cut(s) 688, 1221
SmoI CTYRAG 2 cut(s) 688, 1221
SnaBI TACGTA 1 cut(s) 2003
SphI GCATGC 2 cut(s) 1052, 1475
Sse9I AATT 9 cut(s) 363, 443, 572, 887, 895, 1673, 2006, 2201, 2233
SsiI CCGC 5 cut(s) 180, 342, 493, 524, 1789
SspI AATATT 1 cut(s) 1393
SstI GAGCTC 2 cut(s) 177, 695
StyD4I CCNGG 3 cut(s) 972, 1203, 1466
StyI CCWWGG 4 cut(s) 162, 1079, 1822, 2072
TaaI ACNGT 6 cut(s) 662, 1006, 1349, 1713, 1843, 2175
TaiI ACGT 7 cut(s) 511, 829, 958, 1105, 1863, 2005, 2342
TaqI TCGA 4 cut(s) 143, 600, 1222, 1967
TasI AATT 9 cut(s) 363, 443, 572, 887, 895, 1673, 2006, 2201, 2233
TatI WGTACW 1 cut(s) 1952
TauI GCSGC 2 cut(s) 344, 1792
TfiI GAWTC 7 cut(s) 101, 110, 116, 145, 1889, 1969, 2033
Tru1I TTAA 5 cut(s) 219, 1389, 1863, 2361, 2442
Tru9I TTAA 5 cut(s) 219, 1389, 1863, 2361, 2442
TscAI CASTG 7 cut(s) 22, 40, 462, 1181, 1929, 1981, 2068
TseFI GTSAC 3 cut(s) 419, 662, 983
TseI GCWGC 4 cut(s) 521, 1463, 2117, 2120
Tsp45I GTSAC 3 cut(s) 419, 662, 983
TspDTI ATGAA 8 cut(s) 147, 342, 393, 880, 908, 966, 2121, 2328
TspGWI ACGGA 2 cut(s) 279, 887
TspRI CASTG 7 cut(s) 22, 40, 462, 1181, 1929, 1981, 2068
Van91I CCANNNNNTGG 3 cut(s) 46, 1085, 2282
VneI GTGCAC 1 cut(s) 1177
VpaK11BI GGWCC 2 cut(s) 1819, 2242
XagI CCTNNNNNAGG 1 cut(s) 1057
XapI RAATTY 6 cut(s) 443, 572, 887, 2006, 2201, 2233
XbaI TCTAGA 1 cut(s) 679
XceI RCATGY 3 cut(s) 1052, 1336, 1475
XhoI CTCGAG 1 cut(s) 1221
XmaJI CCTAGG 1 cut(s) 1822
XmiI GTMKAC 1 cut(s) 1697
XmnI GAANNNNTTC 3 cut(s) 879, 1299, 2435
Zsp2I ATGCAT 1 cut(s) 1477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.