Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004707

Physical Location & Seq

Genomic Coordinates Forward (+)

46338376 .. 46339450

Gene Structure 1075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014066

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGAAGAACTCAGATGGTCTGTTACGTTTGTATGCTTCTTGGGCCCGCCTAGAGCTACATCTGGGAAAAGATTTAGCTGCTGCTCGGGGGGTTTGGGAAAGTTTACTGAAGATCAGTGGTACGATGATGGAGGCCTGGCTAGGTTATATAGCAATGGAAATTGAATCGGGCCATGTGAATGAAGCTCGGTCCATATGTAGGAGATGCTACAGTAAAGAAATTTCCGGCACTGGTTCAGAGGACATTTGCTACTCGTGGTTGCGCTTTGAGAGGGAGTTTGGATCGTTGGATGATTTCGACCATGCAGAACGAAAGGTTGCTCCCCGTCTGCAGGAGCTTCAACTATTAAGGTCCAAGCAAGAATCCAAATTGACTGAAGGGAGGGCGAATTCTCTCAAAAAGAATGTGCGTGACAAGAGAAAGCAACGTTCTGATATAAGTGATGAACGACCTCCAGCAAAGAGGCAAAAGGATGCAACTCGAACGCAAAAGAAAGTGCACGGGAAGGATTATGAGGTACAAAACAAAGCTGAACAAAATGAAGGGAAAGAGATGAAAGCCAAGGGTGCCAAAGATGTACAAAATGAGATGAAAGAGCCTGTTCTAGAGAAAACAAAAGACAAGTTCACCGGAAAGTCAAGGGGACTAGCATATGTGGACTTCTCAGATGATGCACACCTTGCTGCAGCCGTAGCAAAAACACAAGCAGACACTCCTAGACAAGAAGCCGAGCGTTGCACGATCAGATCCAAAGCGTGGCAAGAAAGAACATGGGGCATACTGATCAAACTGGCTCAGCCAAGGGATCTCGTGAGACCTCCAATGAACCTAGAGCACGCCGAGGAAGCGACAGTGCAATTTAGGGGAAGAACACATTTGCGGTTCCAAGGAATGTTACTGCACTTGGTTGGAGCACGAATAAGCCAAAAACTTGGGATCCGGATGATGAAAAGCCAAAATCTAATGATGAGTTCAGAAGCATGTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lsm_interact RRM_1 Suf

Protein Analysis

330

Amino Acids

37.62

Weight (kDa)

9.51

Isoelectric Point (pI)

37.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24270 AT4G24270 AT4G24270 AT4G24270
fragaria_vesca	FvH4_5g27610 FvH4_5g27610 FvH4_5g27610 FvH4_5g27610
malus_domestica	MD08G1248800.v1.1 MD15G1443600.v1.1
prunus_persica	Prupe.1G586100_v2.0.a1 Prupe.1G586100_v2.0.a1 Prupe.1G586100_v2.0.a1 Prupe.1G586100_v2.0.a1 Prupe.2G119000_v2.0.a1
pyrus_communis	pycom08g21550 pycom15g39110
rosa_chinensis	RchiOBHm_Chr7g0219031
rosa_laevigata	RLG00000002308 RLG00000014066
rosa_multiflora	Rmu_sc0011122.1_g000003 Rmu_sc0016963.1_g000005
rosa_roxburghii	Rroxscaffold_3G00240230
rosa_rugosa	Rorug07G0180600 Rorug07G0180700 Rorug07G0180800
rosa_samantha	Rh7AG324000 Rh7BG315500 Rh7CG341000 Rh7DG321000
rosa_wichuraiana	Rw7G027440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	566
AccB7I	CCANNNNNTGG	1 cut(s)	756
AccIII	TCCGGA	1 cut(s)	939
AciI	CCGC	2 cut(s)	46, 880
AclI	AACGTT	1 cut(s)	427
AclWI	GGATC	5 cut(s)	289, 741, 813, 931, 944
AcsI	RAATTY	2 cut(s)	219, 388
AcuI	CTGAAG	2 cut(s)	128, 396
AfaI	GTAC	3 cut(s)	121, 519, 579
AfiI	CCNNNNNNNGG	3 cut(s)	198, 331, 756
AgsI	TTSAA	2 cut(s)	164, 341
AjnI	CCWGG	1 cut(s)	134
AluBI	AGCT	5 cut(s)	55, 77, 185, 337, 530
AluI	AGCT	5 cut(s)	55, 77, 185, 337, 530
Alw21I	GWGCWC	3 cut(s)	501, 837, 916
Alw26I	GTCTC	1 cut(s)	808
Alw44I	GTGCAC	1 cut(s)	497
AlwI	GGATC	5 cut(s)	289, 741, 813, 931, 944
Ama87I	CYCGRG	1 cut(s)	84
Aor13HI	TCCGGA	1 cut(s)	939
AoxI	GGCC	3 cut(s)	42, 132, 169
ApaI	GGGCCC	1 cut(s)	46
ApaLI	GTGCAC	1 cut(s)	497
ApeKI	GCWGC	4 cut(s)	77, 80, 683, 686
ApoI	RAATTY	2 cut(s)	219, 388
AspLEI	GCGC	1 cut(s)	264
AspS9I	GGNCC	5 cut(s)	42, 43, 169, 189, 351
AsuHPI	GGTGA	1 cut(s)	619
AvaI	CYCGRG	1 cut(s)	84
AvaII	GGWCC	2 cut(s)	189, 351
BaeGI	GKGCMC	2 cut(s)	46, 501
BamHI	GGATCC	1 cut(s)	936
BanI	GGYRCC	1 cut(s)	566
BanII	GRGCYC	1 cut(s)	46
BauI	CACGAG	2 cut(s)	253, 809
Bbv12I	GWGCWC	3 cut(s)	501, 837, 916
BbvI	GCAGC	4 cut(s)	64, 67, 670, 698
BccI	CCATC	2 cut(s)	8, 121
BceAI	ACGGC	1 cut(s)	674
BciT130I	CCWGG	1 cut(s)	136
BclI	TGATCA	1 cut(s)	783
BcoDI	GTCTC	1 cut(s)	808
BfaI	CTAG	6 cut(s)	50, 140, 605, 647, 717, 830
BfmI	CTRYAG	3 cut(s)	208, 329, 684
BisI	GCNGC	4 cut(s)	78, 81, 684, 687
BlpI	GCTNAGC	1 cut(s)	795
BlsI	GCNGC	4 cut(s)	79, 82, 685, 688
Bme1390I	CCNGG	1 cut(s)	136
Bme18I	GGWCC	2 cut(s)	189, 351
BmeT110I	CYCGRG	1 cut(s)	84
BmgT120I	GGNCC	5 cut(s)	42, 43, 169, 189, 351
BmiI	GGNNCC	4 cut(s)	44, 568, 884, 938
BmrFI	CCNGG	1 cut(s)	136
BmsI	GCATC	3 cut(s)	194, 463, 661
BpmI	CTGGAG	1 cut(s)	438
Bpu1102I	GCTNAGC	1 cut(s)	795
BsaI	GGTCTC	1 cut(s)	808
BsaJI	CCNNGG	4 cut(s)	561, 800, 840, 886
BsaWI	WCCGGW	2 cut(s)	629, 939
Bsc4I	CCNNNNNNNGG	3 cut(s)	198, 331, 756
Bse1I	ACTGG	2 cut(s)	235, 795
Bse3DI	GCAATG	1 cut(s)	159
BseAI	TCCGGA	1 cut(s)	939
BseBI	CCWGG	1 cut(s)	136
BseDI	CCNNGG	4 cut(s)	561, 800, 840, 886
BseGI	GGATG	3 cut(s)	295, 478, 948
BseLI	CCNNNNNNNGG	3 cut(s)	198, 331, 756
BseMI	GCAATG	1 cut(s)	159
BseMII	CTCAG	3 cut(s)	24, 678, 809
BseNI	ACTGG	2 cut(s)	235, 795
BseSI	GKGCMC	2 cut(s)	46, 501
BseXI	GCAGC	4 cut(s)	64, 67, 670, 698
BsgI	GTGCAG	1 cut(s)	884
BshFI	GGCC	3 cut(s)	44, 134, 171
BshNI	GGYRCC	1 cut(s)	566
BsiHKAI	GWGCWC	3 cut(s)	501, 837, 916
BsiHKCI	CYCGRG	1 cut(s)	84
BsiSI	CCGG	3 cut(s)	225, 630, 940
BslFI	GGGAC	1 cut(s)	657
BslI	CCNNNNNNNGG	3 cut(s)	198, 331, 756
BsmAI	GTCTC	1 cut(s)	808
BsmFI	GGGAC	1 cut(s)	657
BsnI	GGCC	3 cut(s)	44, 134, 171
Bso31I	GGTCTC	1 cut(s)	808
BsoBI	CYCGRG	1 cut(s)	84
Bsp120I	GGGCCC	1 cut(s)	42
Bsp1286I	GDGCHC	4 cut(s)	46, 501, 837, 916
Bsp13I	TCCGGA	1 cut(s)	939
Bsp1407I	TGTACA	1 cut(s)	577
Bsp143I	GATC	7 cut(s)	111, 281, 741, 746, 783, 805, 936
Bsp1720I	GCTNAGC	1 cut(s)	795
BspACI	CCGC	2 cut(s)	46, 880
BspANI	GGCC	3 cut(s)	44, 134, 171
BspCNI	CTCAG	3 cut(s)	23, 677, 808
BspEI	TCCGGA	1 cut(s)	939
BspLI	GGNNCC	4 cut(s)	44, 568, 884, 938
BspMAI	CTGCAG	2 cut(s)	333, 688
BspPI	GGATC	5 cut(s)	289, 741, 813, 931, 944
BspT107I	GGYRCC	1 cut(s)	566
BspTNI	GGTCTC	1 cut(s)	808
BsrDI	GCAATG	1 cut(s)	159
BsrGI	TGTACA	1 cut(s)	577
BsrI	ACTGG	2 cut(s)	235, 795
BssECI	CCNNGG	4 cut(s)	561, 800, 840, 886
BssMI	GATC	7 cut(s)	111, 281, 741, 746, 783, 805, 936
BssSI	CACGAG	2 cut(s)	253, 809
BssT1I	CCWWGG	3 cut(s)	561, 800, 886
Bst2BI	CACGAG	2 cut(s)	253, 809
Bst2UI	CCWGG	1 cut(s)	136
Bst4CI	ACNGT	2 cut(s)	212, 853
BstAPI	GCANNNNNTGC	1 cut(s)	680
BstAUI	TGTACA	1 cut(s)	577
BstC8I	GCNNGC	2 cut(s)	46, 837
BstDEI	CTNAG	3 cut(s)	10, 664, 795
BstF5I	GGATG	3 cut(s)	295, 478, 948
BstHHI	GCGC	1 cut(s)	264
BstKTI	GATC	7 cut(s)	114, 284, 744, 749, 786, 808, 939
BstMAI	GTCTC	1 cut(s)	808
BstMBI	GATC	7 cut(s)	111, 281, 741, 746, 783, 805, 936
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 566, 680, 692, 845
BstNI	CCWGG	1 cut(s)	136
BstNSI	RCATGY	1 cut(s)	984
BstSCI	CCNGG	1 cut(s)	134
BstSFI	CTRYAG	3 cut(s)	208, 329, 684
BstSLI	GKGCMC	2 cut(s)	46, 501
BstV1I	GCAGC	4 cut(s)	64, 67, 670, 698
BstX2I	RGATCY	3 cut(s)	746, 805, 936
BstXI	CCANNNNNNTGG	1 cut(s)	932
BstYI	RGATCY	3 cut(s)	746, 805, 936
BsuRI	GGCC	3 cut(s)	44, 134, 171
BtsCI	GGATG	3 cut(s)	295, 478, 948
BtsIMutI	CAGTG	3 cut(s)	121, 228, 858
Cac8I	GCNNGC	2 cut(s)	46, 837
CfoI	GCGC	1 cut(s)	264
Cfr13I	GGNCC	5 cut(s)	42, 43, 169, 189, 351
Csp6I	GTAC	3 cut(s)	120, 518, 578
CviAII	CATG	4 cut(s)	173, 302, 771, 981
CviQI	GTAC	3 cut(s)	120, 518, 578
DdeI	CTNAG	3 cut(s)	10, 664, 795
DpnI	GATC	7 cut(s)	113, 283, 743, 748, 785, 807, 938
DpnII	GATC	7 cut(s)	111, 281, 741, 746, 783, 805, 936
Eco130I	CCWWGG	3 cut(s)	561, 800, 886
Eco147I	AGGCCT	1 cut(s)	134
Eco24I	GRGCYC	1 cut(s)	46
Eco31I	GGTCTC	1 cut(s)	808
Eco47I	GGWCC	2 cut(s)	189, 351
Eco57I	CTGAAG	2 cut(s)	128, 396
Eco88I	CYCGRG	1 cut(s)	84
EcoRI	GAATTC	1 cut(s)	388
EcoRII	CCWGG	1 cut(s)	134
EcoT14I	CCWWGG	3 cut(s)	561, 800, 886
EcoT38I	GRGCYC	1 cut(s)	46
ErhI	CCWWGG	3 cut(s)	561, 800, 886
FaeI	CATG	4 cut(s)	176, 305, 774, 984
FaqI	GGGAC	1 cut(s)	657
FatI	CATG	4 cut(s)	172, 301, 770, 980
FauI	CCCGC	1 cut(s)	53
FauNDI	CATATG	2 cut(s)	194, 652
FbaI	TGATCA	1 cut(s)	783
Fnu4HI	GCNGC	4 cut(s)	78, 81, 684, 687
FokI	GGATG	3 cut(s)	302, 485, 955
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	4 cut(s)	78, 81, 684, 687
FspBI	CTAG	6 cut(s)	50, 140, 605, 647, 717, 830
GlaI	GCGC	1 cut(s)	263
GluI	GCNGC	4 cut(s)	78, 81, 684, 687
GsuI	CTGGAG	1 cut(s)	438
HaeIII	GGCC	3 cut(s)	44, 134, 171
HapII	CCGG	3 cut(s)	225, 630, 940
HhaI	GCGC	1 cut(s)	264
Hin1II	CATG	4 cut(s)	176, 305, 774, 984
Hin6I	GCGC	1 cut(s)	262
HinP1I	GCGC	1 cut(s)	262
HinfI	GANTC	2 cut(s)	164, 362
HpaII	CCGG	3 cut(s)	225, 630, 940
HphI	GGTGA	1 cut(s)	619
Hpy166II	GTNNAC	4 cut(s)	104, 499, 627, 658
Hpy188I	TCNGA	6 cut(s)	13, 238, 433, 667, 746, 976
Hpy188III	TCNNGA	4 cut(s)	605, 811, 940, 987
Hpy8I	GTNNAC	4 cut(s)	104, 499, 627, 658
HpyAV	CCTTC	3 cut(s)	371, 499, 536
HpyCH4III	ACNGT	2 cut(s)	212, 853
HpyCH4IV	ACGT	2 cut(s)	25, 427
HpyCH4V	TGCA	9 cut(s)	305, 331, 476, 499, 674, 686, 738, 856, 901
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 566, 680, 692, 845
HpyF3I	CTNAG	3 cut(s)	10, 664, 795
HpySE526I	ACGT	2 cut(s)	25, 427
Hsp92II	CATG	4 cut(s)	176, 305, 774, 984
HspAI	GCGC	1 cut(s)	262
Kpn2I	TCCGGA	1 cut(s)	939
Ksp22I	TGATCA	1 cut(s)	783
Kzo9I	GATC	7 cut(s)	111, 281, 741, 746, 783, 805, 936
LmnI	GCTCC	3 cut(s)	325, 334, 911
Lsp1109I	GCAGC	4 cut(s)	64, 67, 670, 698
LweI	GCATC	3 cut(s)	194, 463, 661
MaeI	CTAG	6 cut(s)	50, 140, 605, 647, 717, 830
MaeII	ACGT	2 cut(s)	25, 427
MaeIII	GTNAC	3 cut(s)	21, 410, 894
MalI	GATC	7 cut(s)	113, 283, 743, 748, 785, 807, 938
MboI	GATC	7 cut(s)	111, 281, 741, 746, 783, 805, 936
MboII	GAAGA	3 cut(s)	16, 121, 879
MflI	RGATCY	3 cut(s)	746, 805, 936
MhlI	GDGCHC	4 cut(s)	46, 501, 837, 916
MluCI	AATT	5 cut(s)	159, 219, 368, 388, 857
MmeI	TCCRAC	2 cut(s)	267, 889
MnlI	CCTC	9 cut(s)	124, 232, 264, 375, 456, 462, 508, 828, 835
MroI	TCCGGA	1 cut(s)	939
MseI	TTAA	1 cut(s)	347
MslI	CAYNNNNRTG	1 cut(s)	177
MspI	CCGG	3 cut(s)	225, 630, 940
MspR9I	CCNGG	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	136
MwoI	GCNNNNNNNGC	5 cut(s)	41, 566, 680, 692, 845
NdeI	CATATG	2 cut(s)	194, 652
NdeII	GATC	7 cut(s)	111, 281, 741, 746, 783, 805, 936
NlaIII	CATG	4 cut(s)	176, 305, 774, 984
NlaIV	GGNNCC	4 cut(s)	44, 568, 884, 938
NmeAIII	GCCGAG	2 cut(s)	754, 865
NmuCI	GTSAC	1 cut(s)	410
NspI	RCATGY	1 cut(s)	984
PceI	AGGCCT	1 cut(s)	134
PfeI	GAWTC	2 cut(s)	164, 362
PflMI	CCANNNNNTGG	1 cut(s)	756
PkrI	GCNGC	4 cut(s)	79, 82, 685, 688
Psp1406I	AACGTT	1 cut(s)	427
Psp6I	CCWGG	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	134
PspN4I	GGNNCC	4 cut(s)	44, 568, 884, 938
PspOMI	GGGCCC	1 cut(s)	42
PspPI	GGNCC	5 cut(s)	42, 43, 169, 189, 351
PstI	CTGCAG	2 cut(s)	333, 688
PsuI	RGATCY	3 cut(s)	746, 805, 936
RsaI	GTAC	3 cut(s)	121, 519, 579
RsaNI	GTAC	3 cut(s)	120, 518, 578
RseI	CAYNNNNRTG	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	347
SatI	GCNGC	4 cut(s)	78, 81, 684, 687
Sau3AI	GATC	7 cut(s)	111, 281, 741, 746, 783, 805, 936
Sau96I	GGNCC	5 cut(s)	42, 43, 169, 189, 351
ScrFI	CCNGG	1 cut(s)	136
SduI	GDGCHC	4 cut(s)	46, 501, 837, 916
SfaNI	GCATC	3 cut(s)	194, 463, 661
SfcI	CTRYAG	3 cut(s)	208, 329, 684
SinI	GGWCC	2 cut(s)	189, 351
SmiMI	CAYNNNNRTG	1 cut(s)	177
Sse9I	AATT	5 cut(s)	159, 219, 368, 388, 857
SseBI	AGGCCT	1 cut(s)	134
SsiI	CCGC	2 cut(s)	46, 880
SspMI	CTAG	6 cut(s)	50, 140, 605, 647, 717, 830
StuI	AGGCCT	1 cut(s)	134
StyD4I	CCNGG	1 cut(s)	134
StyI	CCWWGG	3 cut(s)	561, 800, 886
TaaI	ACNGT	2 cut(s)	212, 853
TaiI	ACGT	2 cut(s)	28, 430
TaqI	TCGA	2 cut(s)	297, 481
TaqII	GACCGA	1 cut(s)	177
TasI	AATT	5 cut(s)	159, 219, 368, 388, 857
TatI	WGTACW	1 cut(s)	577
TfiI	GAWTC	2 cut(s)	164, 362
Tru1I	TTAA	1 cut(s)	347
Tru9I	TTAA	1 cut(s)	347
TscAI	CASTG	3 cut(s)	121, 235, 858
TseFI	GTSAC	1 cut(s)	410
TseI	GCWGC	4 cut(s)	77, 80, 683, 686
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	8 cut(s)	17, 195, 459, 555, 569, 605, 839, 962
TspRI	CASTG	3 cut(s)	121, 235, 858
Van91I	CCANNNNNTGG	1 cut(s)	756
VneI	GTGCAC	1 cut(s)	497
VpaK11BI	GGWCC	2 cut(s)	189, 351
XapI	RAATTY	2 cut(s)	219, 388
XbaI	TCTAGA	1 cut(s)	604
XceI	RCATGY	1 cut(s)	984
XspI	CTAG	6 cut(s)	50, 140, 605, 647, 717, 830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.