FvH4_5g27610

Squamous cell carcinoma antigen recognized by T-cells

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0004707
Physical Location & Seq
Forward (+)
18818198 .. 18826748
8551 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g27610.t2

Sequence Viewer

Length: 2424 bp
ATGGACGAAGAAACCCTAAACCCCGAACCACACACCGTGACCTCTCTAGCGAACAACAATGGAGACCAACCCATGCCGGATGCCGCTGACCAGAATCTTAGCTCCTCCGACTCCGATTCCGACTCCGCCTCTGATCCCGGCGAAGATCTGCAGCAGATTCAAACACTCGAAGCCGAGCTCGCAACCAACCCCTCTAACTACGACGCCAATGTCCAATACATTAAGATGATGAGGAAAATGGCGGACATTGAAAAGCTGCAGCGAGCGAGGGAGGCTATGAGCAAGGTGTTCCCATTGACCCCCTCTATGTGGCAGGAATGGGCTGACGACGAGGTTGCCATGGGCTCCGGAGCCGAGACTTTCGCTACAGTCGAAAAGCTTTATGAGCAAGGAGTCTTTGATTATCTGTCCATCTCTCTTTGGAGTGACTACTTAGCTTTTGTTCGAGAAAATGATCCCTCAGTAAAAGAAGCTTCACCTGCTGGTATTTCAAAGGCAAGAGATTTGTTTGAACGTGCTCTTACCGCAGCTGGTTTGCATGTATCTGAAGGGAGTAAGATATGGGAAGCTTACAGGGAGTTTGAGCAAGCTATATTACATATTATCGATGGGACTGACACTCAGGCTAGGGAGAAGCAAATTCAGCGCATTCGTGTTATATTCCAGCGTCAGCTATCAGTTCCCCATGTTGATATGAGATCAACACTATTGGCTTACAAGGCATGGGAGATGGAACAAGGAATCGTTGTTGACACTGGCTGCAGTGATCATGATGGTATATCAAGTCATGTTGCCTCAGCTTACCAAAAGGCGTTGGAAATTTACAATGCCCGTGTTTGTTTTGAAGAAAAAATCAGTCAGCATGATATGCCTGATGAAGAAAGACTAAAACAATTCATGAACTACTTGAAATTTGAACAATCTTGTGGAGACCCTGTCCGTGTGCAAGTCTTGTATGAACGCGCTATTACAGAGTTTCCTATAGCCAGTCAGCTCTGGTTTGATTACACTCACTACTTGGACAAAACATTCAAGGTTGGCAGAATTATAAGCAATGTTTATTCCAGGGCTGTGAAGAATTGCCCCTGGGTTGGAGAACTTTGGGTCAGATATTTGCTTTCCTTGGAGCGTGGCCATGCTTCTGAGAAAGAGATAGCAGCTGTGTTTTACAAGTCCCAGCAATGCACCTTTTCAACACTCGATGAGTATGTGGATTTATTTTTCACCCGCATAGATGGATTAAGACGAAGAATCTCATGTCCCATTGAAGGAGATCACGCCTTGGATTACTCAGTGTTAAGGGATACATTTCAGTCTGCATCAGATTACCTATCACCACAGATGAAGAACACAGATGGCCTATTACGTTTGTATGCTTATTGGGCCCGCCTAGAGCTACATCTGGGAAAAGATATAGCTGCTGCTCGGGGGGTTTGGGAAAGTTTACTGAAGATCAGTGGTACAATGATGGAAGCCTGGCAAGGTTATATAGCAATGGAAATTGAATCGGGCCATGTGAATGAAGCTCGTTCCATATATAAGAGATGCTTCAGTAAAAAATTTTCCGGCACTGGTTCAGAGGACATCTGCTACCTGTGGTTGCGCTTTGAGAGGGAGTTTGGTTCATTGGATGATTTCGACCATGCACAACAAAAGGTTGCTCCCCGTCTACAGGAGCTTCAACTATTTCGGTCCAAGCAAGAACCCCAATTGACCGAAGAGAGGGACAATTCTTTCAAAAAAAATGTGCGCGACAAGAGAAAGCAAGCTTCAGATGCAAGTGAACAACCTTTAGCAAAGAGACAAAAGGATGCAGGTCAAAAGAAAAAGAAGGAATATGAGGTCCAAAACTTAGCTGAACAAAATGAAGGGACAGAGATGAAAGCCAAGGGTGTCAAAGGTGTACAAAGTGAGATGAAGGAGCCTGTTCAAGAGAAAACAAAAGTATACGCTGACCAATGCACTGCTTTTGTATCAAACCTGAACTTGAAGGCAAATAATGAACATCTTCACCAGTTCTTCAGTGATGTTGGAGGAGTTGTTGCTATTCGAATACTGAAGGACAAATTCACTGGAAAGTCAAGGGGACTAGCATATGTGGACTTCTCGGATGATGCACACCTTGCTGCAGCTGTAGCAAAAAATAAGAAGACACTCCTAGGGAAGAAGTTGAGCATTGCACGATCAGATCCGAAGCGTGGCAAGAAAGAACATGGGCATACTGATCAAACCGGTGCAGCCAGTGGATCTGGTGAGCCACGCCAAAGAAGCGACAATGTTCTTCTTAAGGGGAAGAACACATTTGCAGTTCCAAGGAATGTTGCTGCACTTGGTTGGAGCACGAATAAGCCAAAAACTGAGGATCCGGATGATGAAAAGCCAAAATCTAATGATGAGTTCAGAAGCATGTTCCTGAAAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lsm_interact RRM_1 Suf

Protein Analysis

808

Amino Acids

91.62

Weight (kDa)

5.78

Isoelectric Point (pI)

39.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Suf PF05843 10 - 282 2.2e-20 Suppressor of forked protein (Suf)
HAT_PRP39_N PF23240 10 - 129 3.6e-10 PRP39 N-terminal HAT repeat
HAT_PRP39_C PF23241 170 - 252 7e-12 PRP39 C-terminal HAT repeat
HAT_PRP39_N PF23240 193 - 298 8.3e-06 PRP39 N-terminal HAT repeat
RRM_1 PF00076 550 - 617 1.2e-14 RNA recognition motif
Lsm_interact PF05391 682 - 699 4.9e-06 Lsm interaction motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1049
AarI CACCTGC 1 cut(s) 487
AasI GACNNNNNNGTC 1 cut(s) 209
Acc36I ACCTGC 2 cut(s) 487, 1805
AccI GTMKAC 2 cut(s) 1669, 1947
AccII CGCG 2 cut(s) 963, 1752
AccIII TCCGGA 2 cut(s) 347, 2365
AciI CCGC 6 cut(s) 84, 126, 242, 525, 1228, 1387
AclWI GGATC 6 cut(s) 128, 449, 2183, 2254, 2357, 2370
AcoI YGGCCR 1 cut(s) 1132
AcsI RAATTY 5 cut(s) 639, 819, 911, 1559, 2066
AcuI CTGAAG 6 cut(s) 567, 1469, 1534, 1755, 2005, 2078
AcyI GRCGYC 1 cut(s) 204
AdeI CACNNNGTG 1 cut(s) 37
AfaI GTAC 2 cut(s) 1462, 1905
AfiI CCNNNNNNNGG 6 cut(s) 309, 1091, 1268, 1672, 1722, 2198
AflII CTTAAG 1 cut(s) 2285
AgeI ACCGGT 1 cut(s) 2231
AjnI CCWGG 3 cut(s) 1064, 1085, 1475
Alw21I GWGCWC 3 cut(s) 180, 520, 2342
Alw26I GTCTC 4 cut(s) 57, 350, 924, 1795
AlwI GGATC 6 cut(s) 128, 449, 2183, 2254, 2357, 2370
Ama87I CYCGRG 1 cut(s) 1425
Aor13HI TCCGGA 2 cut(s) 347, 2365
AoxI GGCC 4 cut(s) 1132, 1357, 1383, 1510
ApaI GGGCCC 1 cut(s) 1387
ApoI RAATTY 5 cut(s) 639, 819, 911, 1559, 2066
AsiGI ACCGGT 1 cut(s) 2231
Asp700I GAANNNNTTC 1 cut(s) 2007
AspA2I CCTAGG 1 cut(s) 2158
AspLEI GCGC 4 cut(s) 648, 965, 1605, 1752
AspS9I GGNCC 5 cut(s) 1383, 1384, 1510, 1692, 1843
AsuC2I CCSGG 1 cut(s) 138
AsuHPI GGTGA 5 cut(s) 468, 1216, 1326, 2003, 2264
AsuII TTCGAA 1 cut(s) 2050
AvaI CYCGRG 1 cut(s) 1425
AvaII GGWCC 2 cut(s) 1692, 1843
AvrII CCTAGG 1 cut(s) 2158
BaeGI GKGCMC 1 cut(s) 1387
BalI TGGCCA 1 cut(s) 1134
BamHI GGATCC 1 cut(s) 2362
BanII GRGCYC 3 cut(s) 180, 347, 1387
BbsI GAAGAC 1 cut(s) 2156
Bbv12I GWGCWC 3 cut(s) 180, 520, 2342
BbvCI CCTCAGC 1 cut(s) 796
BccI CCATC 7 cut(s) 419, 602, 724, 767, 1229, 1349, 1462
BcgI CGANNNNNNTGC 2 cut(s) 317, 351
BciT130I CCWGG 3 cut(s) 1066, 1087, 1477
BciVI GTATCC 1 cut(s) 1297
BclI TGATCA 2 cut(s) 766, 2224
BcnI CCSGG 1 cut(s) 138
BcoDI GTCTC 4 cut(s) 57, 350, 924, 1795
BfaI CTAG 5 cut(s) 47, 627, 1391, 2090, 2159
BfmI CTRYAG 8 cut(s) 149, 257, 366, 760, 981, 1670, 2127, 2133
BfrI CTTAAG 1 cut(s) 2285
BfuAI ACCTGC 2 cut(s) 487, 1805
BfuI GTATCC 1 cut(s) 1297
BglII AGATCT 1 cut(s) 145
BlnI CCTAGG 1 cut(s) 2158
Bme1390I CCNGG 4 cut(s) 138, 1066, 1087, 1477
Bme18I GGWCC 2 cut(s) 1692, 1843
BmeT110I CYCGRG 1 cut(s) 1425
BmgT120I GGNCC 5 cut(s) 1383, 1384, 1510, 1692, 1843
BmiI GGNNCC 5 cut(s) 346, 352, 1385, 1923, 2364
BmrFI CCNGG 4 cut(s) 138, 1066, 1087, 1477
BmsI GCATC 6 cut(s) 70, 1328, 1535, 1765, 1801, 2104
BpiI GAAGAC 1 cut(s) 2156
Bpu10I CCTNAGC 1 cut(s) 796
Bpu14I TTCGAA 1 cut(s) 2050
BpuMI CCSGG 1 cut(s) 138
Bsa29I ATCGAT 1 cut(s) 606
BsaHI GRCGYC 1 cut(s) 204
BsaI GGTCTC 2 cut(s) 57, 924
BsaJI CCNNGG 9 cut(s) 339, 1065, 1085, 1086, 1122, 1281, 1887, 2158, 2312
BsaWI WCCGGW 3 cut(s) 347, 2231, 2365
BsaXI ACNNNNNCTCC 4 cut(s) 921, 951, 2025, 2055
Bsc4I CCNNNNNNNGG 6 cut(s) 309, 1091, 1268, 1672, 1722, 2198
Bse118I RCCGGY 1 cut(s) 2231
Bse1I ACTGG 6 cut(s) 760, 987, 1576, 2014, 2077, 2241
Bse3DI GCAATG 4 cut(s) 1060, 1187, 1500, 2175
BseAI TCCGGA 2 cut(s) 347, 2365
BseBI CCWGG 3 cut(s) 1066, 1087, 1477
BseCI ATCGAT 1 cut(s) 606
BseDI CCNNGG 9 cut(s) 339, 1065, 1085, 1086, 1122, 1281, 1887, 2158, 2312
BseGI GGATG 5 cut(s) 85, 1636, 1816, 2116, 2374
BseLI CCNNNNNNNGG 6 cut(s) 309, 1091, 1268, 1672, 1722, 2198
BseMI GCAATG 4 cut(s) 1060, 1187, 1500, 2175
BseMII CTCAG 6 cut(s) 474, 635, 810, 1134, 1305, 2349
BseNI ACTGG 6 cut(s) 760, 987, 1576, 2014, 2077, 2241
BseRI GAGGAG 2 cut(s) 94, 2049
BseSI GKGCMC 1 cut(s) 1387
BseYI CCCAGC 1 cut(s) 1176
BsgI GTGCAG 2 cut(s) 2256, 2310
Bsh1236I CGCG 2 cut(s) 963, 1752
BshFI GGCC 4 cut(s) 1134, 1359, 1385, 1512
BshTI ACCGGT 1 cut(s) 2231
BshVI ATCGAT 1 cut(s) 606
BsiHKAI GWGCWC 3 cut(s) 180, 520, 2342
BsiHKCI CYCGRG 1 cut(s) 1425
BsiSI CCGG 6 cut(s) 77, 138, 348, 1566, 2232, 2366
BslFI GGGAC 6 cut(s) 625, 1159, 1245, 1739, 1885, 2100
BslI CCNNNNNNNGG 6 cut(s) 309, 1091, 1268, 1672, 1722, 2198
BsmAI GTCTC 4 cut(s) 57, 350, 924, 1795
BsmFI GGGAC 6 cut(s) 625, 1159, 1245, 1739, 1885, 2100
BsmI GAATGC 1 cut(s) 648
BsnI GGCC 4 cut(s) 1134, 1359, 1385, 1512
Bso31I GGTCTC 2 cut(s) 57, 924
BsoBI CYCGRG 1 cut(s) 1425
Bsp119I TTCGAA 1 cut(s) 2050
Bsp120I GGGCCC 1 cut(s) 1383
Bsp1286I GDGCHC 5 cut(s) 180, 347, 520, 1387, 2342
Bsp13I TCCGGA 2 cut(s) 347, 2365
Bsp1407I TGTACA 1 cut(s) 1903
Bsp19I CCATGG 1 cut(s) 339
BspACI CCGC 6 cut(s) 84, 126, 242, 525, 1228, 1387
BspANI GGCC 4 cut(s) 1134, 1359, 1385, 1512
BspCNI CTCAG 6 cut(s) 473, 634, 809, 1135, 1304, 2350
BspDI ATCGAT 1 cut(s) 606
BspEI TCCGGA 2 cut(s) 347, 2365
BspFNI CGCG 2 cut(s) 963, 1752
BspHI TCATGA 2 cut(s) 769, 897
BspLI GGNNCC 5 cut(s) 346, 352, 1385, 1923, 2364
BspMAI CTGCAG 4 cut(s) 153, 261, 764, 2131
BspMI ACCTGC 2 cut(s) 487, 1805
BspPI GGATC 6 cut(s) 128, 449, 2183, 2254, 2357, 2370
BspT104I TTCGAA 1 cut(s) 2050
BspTI CTTAAG 1 cut(s) 2285
BspTNI GGTCTC 2 cut(s) 57, 924
BsrDI GCAATG 4 cut(s) 1060, 1187, 1500, 2175
BsrFI RCCGGY 1 cut(s) 2231
BsrGI TGTACA 1 cut(s) 1903
BsrI ACTGG 6 cut(s) 760, 987, 1576, 2014, 2077, 2241
BssAI RCCGGY 1 cut(s) 2231
BssECI CCNNGG 9 cut(s) 339, 1065, 1085, 1086, 1122, 1281, 1887, 2158, 2312
BssNAI GTATAC 1 cut(s) 1948
BssNI GRCGYC 1 cut(s) 204
BssT1I CCWWGG 6 cut(s) 339, 1122, 1281, 1887, 2158, 2312
Bst1107I GTATAC 1 cut(s) 1948
Bst2UI CCWGG 3 cut(s) 1066, 1087, 1477
Bst4CI ACNGT 2 cut(s) 37, 370
Bst6I CTCTTC 1 cut(s) 1713
BstACI GRCGYC 1 cut(s) 204
BstAFI CTTAAG 1 cut(s) 2285
BstAPI GCANNNNNTGC 2 cut(s) 868, 2123
BstAUI TGTACA 1 cut(s) 1903
BstBI TTCGAA 1 cut(s) 2050
BstC8I GCNNGC 5 cut(s) 180, 264, 588, 1387, 1767
BstDEI CTNAG 9 cut(s) 98, 433, 460, 621, 796, 1143, 1291, 1852, 2358
BstDSI CCRYGG 1 cut(s) 339
BstF5I GGATG 5 cut(s) 85, 1636, 1816, 2116, 2374
BstFNI CGCG 2 cut(s) 963, 1752
BstHHI GCGC 4 cut(s) 648, 965, 1605, 1752
BstMAI GTCTC 4 cut(s) 57, 350, 924, 1795
BstNI CCWGG 3 cut(s) 1066, 1087, 1477
BstNSI RCATGY 2 cut(s) 542, 2410
BstSCI CCNGG 4 cut(s) 136, 1064, 1085, 1475
BstSFI CTRYAG 8 cut(s) 149, 257, 366, 760, 981, 1670, 2127, 2133
BstSLI GKGCMC 1 cut(s) 1387
BstUI CGCG 2 cut(s) 963, 1752
BstV2I GAAGAC 1 cut(s) 2156
BstX2I RGATCY 4 cut(s) 145, 2188, 2246, 2362
BstYI RGATCY 4 cut(s) 145, 2188, 2246, 2362
BstZ17I GTATAC 1 cut(s) 1948
Bsu15I ATCGAT 1 cut(s) 606
BsuI GTATCC 1 cut(s) 1297
BsuRI GGCC 4 cut(s) 1134, 1359, 1385, 1512
BsuTUI ATCGAT 1 cut(s) 606
BtgI CCRYGG 1 cut(s) 339
BtsCI GGATG 5 cut(s) 85, 1636, 1816, 2116, 2374
BtsI GCAGTG 2 cut(s) 769, 1962
BtsIMutI CAGTG 9 cut(s) 753, 769, 1299, 1462, 1569, 1962, 2029, 2070, 2248
BveI ACCTGC 2 cut(s) 487, 1805
Cac8I GCNNGC 5 cut(s) 180, 264, 588, 1387, 1767
CciI TCATGA 2 cut(s) 769, 897
CfoI GCGC 4 cut(s) 648, 965, 1605, 1752
Cfr10I RCCGGY 1 cut(s) 2231
Cfr13I GGNCC 5 cut(s) 1383, 1384, 1510, 1692, 1843
ClaI ATCGAT 1 cut(s) 606
CseI GACGC 2 cut(s) 212, 656
Csp6I GTAC 2 cut(s) 1461, 1904
CspAI ACCGGT 1 cut(s) 2231
CviQI GTAC 2 cut(s) 1461, 1904
DdeI CTNAG 9 cut(s) 98, 433, 460, 621, 796, 1143, 1291, 1852, 2358
DraIII CACNNNGTG 1 cut(s) 37
DrdI GACNNNNNNGTC 1 cut(s) 209
DseDI GACNNNNNNGTC 1 cut(s) 209
EaeI YGGCCR 1 cut(s) 1132
Eam1104I CTCTTC 1 cut(s) 1713
EarI CTCTTC 1 cut(s) 1713
EciI GGCGGA 2 cut(s) 115, 257
Ecl136II GAGCTC 1 cut(s) 178
Eco130I CCWWGG 6 cut(s) 339, 1122, 1281, 1887, 2158, 2312
Eco24I GRGCYC 3 cut(s) 180, 347, 1387
Eco31I GGTCTC 2 cut(s) 57, 924
Eco47I GGWCC 2 cut(s) 1692, 1843
Eco53kI GAGCTC 1 cut(s) 178
Eco57I CTGAAG 6 cut(s) 567, 1469, 1534, 1755, 2005, 2078
Eco88I CYCGRG 1 cut(s) 1425
EcoICRI GAGCTC 1 cut(s) 178
EcoRII CCWGG 3 cut(s) 1064, 1085, 1475
EcoT14I CCWWGG 6 cut(s) 339, 1122, 1281, 1887, 2158, 2312
EcoT38I GRGCYC 3 cut(s) 180, 347, 1387
ErhI CCWWGG 6 cut(s) 339, 1122, 1281, 1887, 2158, 2312
FalI AAGNNNNNCTT 2 cut(s) 1532, 1564
FaqI GGGAC 6 cut(s) 625, 1159, 1245, 1739, 1885, 2100
FauI CCCGC 2 cut(s) 1235, 1394
FauNDI CATATG 1 cut(s) 2095
FbaI TGATCA 2 cut(s) 766, 2224
FblI GTMKAC 2 cut(s) 1669, 1947
FokI GGATG 5 cut(s) 92, 1643, 1823, 2123, 2381
FriOI GRGCYC 3 cut(s) 180, 347, 1387
FspBI CTAG 5 cut(s) 47, 627, 1391, 2090, 2159
GlaI GCGC 4 cut(s) 647, 964, 1604, 1751
GsaI CCCAGC 1 cut(s) 1180
HaeIII GGCC 4 cut(s) 1134, 1359, 1385, 1512
HapII CCGG 6 cut(s) 77, 138, 348, 1566, 2232, 2366
HgaI GACGC 2 cut(s) 212, 656
HhaI GCGC 4 cut(s) 648, 965, 1605, 1752
Hin1I GRCGYC 1 cut(s) 204
Hin6I GCGC 4 cut(s) 646, 963, 1603, 1750
HinP1I GCGC 4 cut(s) 646, 963, 1603, 1750
HincII GTYRAC 1 cut(s) 751
HindII GTYRAC 1 cut(s) 751
HindIII AAGCTT 4 cut(s) 377, 471, 567, 1767
HinfI GANTC 9 cut(s) 94, 110, 116, 122, 157, 393, 741, 1251, 1505
HpaII CCGG 6 cut(s) 77, 138, 348, 1566, 2232, 2366
HphI GGTGA 5 cut(s) 468, 1216, 1326, 2003, 2264
Hpy166II GTNNAC 7 cut(s) 751, 1445, 1670, 1784, 1904, 1948, 2101
Hpy188III TCNNGA 7 cut(s) 348, 446, 770, 898, 1931, 2366, 2413
Hpy8I GTNNAC 7 cut(s) 751, 1445, 1670, 1784, 1904, 1948, 2101
Hpy99I CGWCG 2 cut(s) 206, 332
HpyAV CCTTC 7 cut(s) 542, 1262, 1825, 1862, 1912, 1984, 2053
HpyCH4III ACNGT 2 cut(s) 37, 370
HpyCH4IV ACGT 2 cut(s) 514, 1366
HpyF3I CTNAG 9 cut(s) 98, 433, 460, 621, 796, 1143, 1291, 1852, 2358
HpySE526I ACGT 2 cut(s) 514, 1366
Hsp92I GRCGYC 1 cut(s) 204
HspAI GCGC 4 cut(s) 646, 963, 1603, 1750
Kpn2I TCCGGA 2 cut(s) 347, 2365
Ksp22I TGATCA 2 cut(s) 766, 2224
LmnI GCTCC 8 cut(s) 107, 350, 350, 1126, 1666, 1675, 1921, 2337
LweI GCATC 6 cut(s) 70, 1328, 1535, 1765, 1801, 2104
MaeI CTAG 5 cut(s) 47, 627, 1391, 2090, 2159
MaeII ACGT 2 cut(s) 514, 1366
MaeIII GTNAC 2 cut(s) 37, 425
MfeI CAATTG 1 cut(s) 1709
MflI RGATCY 4 cut(s) 145, 2188, 2246, 2362
MhlI GDGCHC 5 cut(s) 180, 347, 520, 1387, 2342
MlsI TGGCCA 1 cut(s) 1134
MluNI TGGCCA 1 cut(s) 1134
MlyI GAGTC 3 cut(s) 104, 116, 402
MmeI TCCRAC 6 cut(s) 132, 144, 795, 1072, 2011, 2315
Mox20I TGGCCA 1 cut(s) 1134
MroI TCCGGA 2 cut(s) 347, 2365
MroXI GAANNNNTTC 1 cut(s) 2007
MscI TGGCCA 1 cut(s) 1134
MseI TTAA 4 cut(s) 222, 1241, 1298, 2286
MslI CAYNNNNRTG 2 cut(s) 224, 1518
Msp20I TGGCCA 1 cut(s) 1134
MspA1I CMGCKG 4 cut(s) 86, 530, 1160, 2132
MspCI CTTAAG 1 cut(s) 2285
MspI CCGG 6 cut(s) 77, 138, 348, 1566, 2232, 2366
MspR9I CCNGG 4 cut(s) 138, 1066, 1087, 1477
MunI CAATTG 1 cut(s) 1709
Mva1269I GAATGC 1 cut(s) 648
MvaI CCWGG 3 cut(s) 1066, 1087, 1477
MvnI CGCG 2 cut(s) 963, 1752
NciI CCSGG 1 cut(s) 138
NcoI CCATGG 1 cut(s) 339
NdeI CATATG 1 cut(s) 2095
NlaIV GGNNCC 5 cut(s) 346, 352, 1385, 1923, 2364
NmeAIII GCCGAG 2 cut(s) 199, 379
NmuCI GTSAC 2 cut(s) 37, 425
NspI RCATGY 2 cut(s) 542, 2410
NspV TTCGAA 1 cut(s) 2050
PagI TCATGA 2 cut(s) 769, 897
PaqCI CACCTGC 1 cut(s) 487
PasI CCCWGGG 1 cut(s) 1086
PcsI WCGNNNNNNNCGW 1 cut(s) 369
PctI GAATGC 1 cut(s) 648
PdmI GAANNNNTTC 1 cut(s) 2007
PfeI GAWTC 6 cut(s) 94, 116, 157, 741, 1251, 1505
PflFI GACNNNGTC 1 cut(s) 935
PinAI ACCGGT 1 cut(s) 2231
PleI GAGTC 3 cut(s) 104, 116, 401
PpsI GAGTC 3 cut(s) 104, 116, 401
PsiI TTATAA 1 cut(s) 1049
Psp124BI GAGCTC 1 cut(s) 180
Psp6I CCWGG 3 cut(s) 1064, 1085, 1475
PspFI CCCAGC 1 cut(s) 1176
PspGI CCWGG 3 cut(s) 1064, 1085, 1475
PspN4I GGNNCC 5 cut(s) 346, 352, 1385, 1923, 2364
PspOMI GGGCCC 1 cut(s) 1383
PspPI GGNCC 5 cut(s) 1383, 1384, 1510, 1692, 1843
PstI CTGCAG 4 cut(s) 153, 261, 764, 2131
PsuI RGATCY 4 cut(s) 145, 2188, 2246, 2362
PsyI GACNNNGTC 1 cut(s) 935
PvuII CAGCTG 3 cut(s) 530, 1160, 2132
RsaI GTAC 2 cut(s) 1462, 1905
RsaNI GTAC 2 cut(s) 1461, 1904
RseI CAYNNNNRTG 2 cut(s) 224, 1518
SacI GAGCTC 1 cut(s) 180
SaqAI TTAA 4 cut(s) 222, 1241, 1298, 2286
Sau96I GGNCC 5 cut(s) 1383, 1384, 1510, 1692, 1843
SchI GAGTC 3 cut(s) 104, 116, 402
ScrFI CCNGG 4 cut(s) 138, 1066, 1087, 1477
SduI GDGCHC 5 cut(s) 180, 347, 520, 1387, 2342
SfaNI GCATC 6 cut(s) 70, 1328, 1535, 1765, 1801, 2104
SfcI CTRYAG 8 cut(s) 149, 257, 366, 760, 981, 1670, 2127, 2133
SfuI TTCGAA 1 cut(s) 2050
SinI GGWCC 2 cut(s) 1692, 1843
SmiMI CAYNNNNRTG 2 cut(s) 224, 1518
SmlI CTYRAG 1 cut(s) 2285
SmoI CTYRAG 1 cut(s) 2285
SsiI CCGC 6 cut(s) 84, 126, 242, 525, 1228, 1387
SspMI CTAG 5 cut(s) 47, 627, 1391, 2090, 2159
SstI GAGCTC 1 cut(s) 180
StyD4I CCNGG 4 cut(s) 136, 1064, 1085, 1475
StyI CCWWGG 6 cut(s) 339, 1122, 1281, 1887, 2158, 2312
TaaI ACNGT 2 cut(s) 37, 370
TaiI ACGT 2 cut(s) 517, 1369
TaqI TCGA 7 cut(s) 168, 372, 445, 606, 1200, 1638, 2050
TaqII GACCGA 2 cut(s) 1680, 1730
TatI WGTACW 1 cut(s) 1903
TauI GCSGC 1 cut(s) 86
TfiI GAWTC 6 cut(s) 94, 116, 157, 741, 1251, 1505
Tru1I TTAA 4 cut(s) 222, 1241, 1298, 2286
Tru9I TTAA 4 cut(s) 222, 1241, 1298, 2286
TscAI CASTG 9 cut(s) 760, 769, 1299, 1462, 1576, 1969, 2029, 2077, 2248
TseFI GTSAC 2 cut(s) 37, 425
Tsp45I GTSAC 2 cut(s) 37, 425
TspGWI ACGGA 1 cut(s) 929
TspRI CASTG 9 cut(s) 760, 769, 1299, 1462, 1576, 1969, 2029, 2077, 2248
Tth111I GACNNNGTC 1 cut(s) 935
Vha464I CTTAAG 1 cut(s) 2285
VpaK11BI GGWCC 2 cut(s) 1692, 1843
XapI RAATTY 5 cut(s) 639, 819, 911, 1559, 2066
XceI RCATGY 2 cut(s) 542, 2410
XmaJI CCTAGG 1 cut(s) 2158
XmiI GTMKAC 2 cut(s) 1669, 1947
XmnI GAANNNNTTC 1 cut(s) 2007
XspI CTAG 5 cut(s) 47, 627, 1391, 2090, 2159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.