Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016963.1

Orthogroup ID

OG0004707

Physical Location & Seq

Genomic Coordinates Forward (+)

23420 .. 24842

Gene Structure 1423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016963.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

atggaggaagaaaccctaaatcctgaaccagagaccgtgacttcgcaagagaacaacaatggagaccaacccatgctggatgccgctgaccaaaatcctaactcctccagctccgattccgattccgattccggctccggctccgatgacgaagaccaagcacagcaaaacctggagattcaaacactcgaagccgagctcgcaaccaacccctccaactacgatgcccatgtccaatacattcagattctgaggaaaatggctgacattgaaaagctgaggcgagcgagggaagctatgagtatgctgttgccgttaaccccctccatgtggcaggattgggctaaggacgaacttgctatgggctccggacccgagacgttttctacagttgaaaagctttatgagcaaggagtctctgattatctgtccatctctctttggggagactacttaaattttgttcgagaaaatgatccgtcagtaaaagaatcttcacctgctggtatttccaaggaaagagatttatttgagcgtgctcttactgcagctggtttgcatgtatctgaaggcaataagatatgggaagcttacagggagtttgagcaagctatatgtgatactatcgatgggactgacactcaggcaagagagaagcaaattcggcgcattcgtgttatattccaacgtcagctatcagttccccatgttaatatgagatcaacacttttggcttacaaggcatgggagatggaacaaggaaccattgttgacactggctgcagtgatcaggatggtatttcatctcatgttgctgcagcataccaaaaggcattggaaatttataatgcccgtgttcattttgaagaacaaatcagtcagcatgatatgcctgagatagaaagacttgaaaagttcatggtaattatcagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lsm_interact RRM_1 Suf

Protein Analysis

311

Amino Acids

35.15

Weight (kDa)

4.43

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24270 AT4G24270 AT4G24270 AT4G24270
fragaria_vesca	FvH4_5g27610 FvH4_5g27610 FvH4_5g27610 FvH4_5g27610
malus_domestica	MD08G1248800.v1.1 MD15G1443600.v1.1
prunus_persica	Prupe.1G586100_v2.0.a1 Prupe.1G586100_v2.0.a1 Prupe.1G586100_v2.0.a1 Prupe.1G586100_v2.0.a1 Prupe.2G119000_v2.0.a1
pyrus_communis	pycom08g21550 pycom15g39110
rosa_chinensis	RchiOBHm_Chr7g0219031
rosa_laevigata	RLG00000002308 RLG00000014066
rosa_multiflora	Rmu_sc0011122.1_g000003 Rmu_sc0016963.1_g000005
rosa_roxburghii	Rroxscaffold_3G00240230
rosa_rugosa	Rorug07G0180600 Rorug07G0180700 Rorug07G0180800
rosa_samantha	Rh7AG324000 Rh7BG315500 Rh7CG341000 Rh7DG321000
rosa_wichuraiana	Rw7G027440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	846
AarI	CACCTGC	1 cut(s)	508
Acc36I	ACCTGC	1 cut(s)	508
AccIII	TCCGGA	1 cut(s)	368
AciI	CCGC	1 cut(s)	84
AclWI	GGATC	1 cut(s)	470
AcsI	RAATTY	3 cut(s)	457, 660, 840
AcuI	CTGAAG	1 cut(s)	588
AfiI	CCNNNNNNNGG	1 cut(s)	330
AgsI	TTSAA	5 cut(s)	182, 272, 395, 866, 911
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	9 cut(s)	111, 199, 277, 296, 400, 551, 590, 611, 694
AluI	AGCT	9 cut(s)	111, 199, 277, 296, 400, 551, 590, 611, 694
Alw21I	GWGCWC	2 cut(s)	201, 541
Alw26I	GTCTC	5 cut(s)	26, 57, 371, 421, 441
AlwI	GGATC	1 cut(s)	470
AlwNI	CAGNNNCTG	1 cut(s)	250
Ama87I	CYCGRG	1 cut(s)	374
Aor13HI	TCCGGA	1 cut(s)	368
ApeKI	GCWGC	4 cut(s)	548, 780, 815, 818
ApoI	RAATTY	3 cut(s)	457, 660, 840
ArsI	GACNNNNNNTTYG	2 cut(s)	25, 57
AspLEI	GCGC	1 cut(s)	669
AspS9I	GGNCC	1 cut(s)	371
AsuHPI	GGTGA	1 cut(s)	489
AvaI	CYCGRG	1 cut(s)	374
AvaII	GGWCC	1 cut(s)	371
BanII	GRGCYC	2 cut(s)	201, 368
BbsI	GAAGAC	1 cut(s)	159
Bbv12I	GWGCWC	2 cut(s)	201, 541
BbvCI	CCTCAGC	1 cut(s)	278
BbvI	GCAGC	4 cut(s)	560, 767, 802, 830
BccI	CCATC	4 cut(s)	440, 623, 745, 788
BceAI	ACGGC	1 cut(s)	298
BciT130I	CCWGG	1 cut(s)	173
BclI	TGATCA	1 cut(s)	787
BcoDI	GTCTC	5 cut(s)	26, 57, 371, 421, 441
BfmI	CTRYAG	4 cut(s)	387, 546, 781, 816
BfuAI	ACCTGC	1 cut(s)	508
BisI	GCNGC	5 cut(s)	84, 549, 781, 816, 819
BlsI	GCNGC	5 cut(s)	85, 550, 782, 817, 820
Bme1390I	CCNGG	1 cut(s)	173
Bme18I	GGWCC	1 cut(s)	371
BmeT110I	CYCGRG	1 cut(s)	374
BmgT120I	GGNCC	1 cut(s)	371
BmiI	GGNNCC	5 cut(s)	136, 142, 367, 373, 763
BmrFI	CCNGG	1 cut(s)	173
BmsI	GCATC	2 cut(s)	70, 214
BpiI	GAAGAC	1 cut(s)	159
BpmI	CTGGAG	2 cut(s)	91, 194
Bpu10I	CCTNAGC	2 cut(s)	278, 345
Bsa29I	ATCGAT	1 cut(s)	627
BsaI	GGTCTC	2 cut(s)	26, 57
BsaJI	CCNNGG	1 cut(s)	513
BsaWI	WCCGGW	1 cut(s)	368
Bsc4I	CCNNNNNNNGG	1 cut(s)	330
Bse1I	ACTGG	1 cut(s)	781
BseAI	TCCGGA	1 cut(s)	368
BseBI	CCWGG	1 cut(s)	173
BseCI	ATCGAT	1 cut(s)	627
BseDI	CCNNGG	1 cut(s)	513
BseGI	GGATG	2 cut(s)	85, 799
BseLI	CCNNNNNNNGG	1 cut(s)	330
BseMII	CTCAG	4 cut(s)	242, 269, 656, 885
BseNI	ACTGG	1 cut(s)	781
BseRI	GAGGAG	1 cut(s)	94
BseXI	GCAGC	4 cut(s)	560, 767, 802, 830
BshVI	ATCGAT	1 cut(s)	627
BsiHKAI	GWGCWC	2 cut(s)	201, 541
BsiHKCI	CYCGRG	1 cut(s)	374
BsiSI	CCGG	3 cut(s)	132, 138, 369
BslFI	GGGAC	1 cut(s)	646
BslI	CCNNNNNNNGG	1 cut(s)	330
BsmAI	GTCTC	5 cut(s)	26, 57, 371, 421, 441
BsmBI	CGTCTC	1 cut(s)	371
BsmFI	GGGAC	1 cut(s)	646
BsmI	GAATGC	1 cut(s)	669
Bso31I	GGTCTC	2 cut(s)	26, 57
BsoBI	CYCGRG	1 cut(s)	374
Bsp1286I	GDGCHC	3 cut(s)	201, 368, 541
Bsp13I	TCCGGA	1 cut(s)	368
Bsp143I	GATC	3 cut(s)	475, 719, 787
BspACI	CCGC	1 cut(s)	84
BspCNI	CTCAG	4 cut(s)	243, 270, 655, 886
BspDI	ATCGAT	1 cut(s)	627
BspEI	TCCGGA	1 cut(s)	368
BspLI	GGNNCC	5 cut(s)	136, 142, 367, 373, 763
BspMAI	CTGCAG	3 cut(s)	550, 785, 820
BspMI	ACCTGC	1 cut(s)	508
BspPI	GGATC	1 cut(s)	470
BspTNI	GGTCTC	2 cut(s)	26, 57
BsrI	ACTGG	1 cut(s)	781
BssECI	CCNNGG	1 cut(s)	513
BssMI	GATC	3 cut(s)	475, 719, 787
BssT1I	CCWWGG	1 cut(s)	513
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	2 cut(s)	37, 391
BstAPI	GCANNNNNTGC	1 cut(s)	889
BstC8I	GCNNGC	4 cut(s)	201, 285, 537, 609
BstDEI	CTNAG	5 cut(s)	251, 278, 345, 642, 894
BstF5I	GGATG	2 cut(s)	85, 799
BstHHI	GCGC	1 cut(s)	669
BstKTI	GATC	3 cut(s)	478, 722, 790
BstMAI	GTCTC	5 cut(s)	26, 57, 371, 421, 441
BstMBI	GATC	3 cut(s)	475, 719, 787
BstMWI	GCNNNNNNNGC	7 cut(s)	200, 293, 406, 545, 664, 740, 889
BstNI	CCWGG	1 cut(s)	173
BstNSI	RCATGY	1 cut(s)	563
BstSCI	CCNGG	1 cut(s)	171
BstSFI	CTRYAG	4 cut(s)	387, 546, 781, 816
BstV1I	GCAGC	4 cut(s)	560, 767, 802, 830
BstV2I	GAAGAC	1 cut(s)	159
Bsu15I	ATCGAT	1 cut(s)	627
BsuTUI	ATCGAT	1 cut(s)	627
BtsCI	GGATG	2 cut(s)	85, 799
BtsI	GCAGTG	1 cut(s)	790
BtsIMutI	CAGTG	2 cut(s)	774, 790
BveI	ACCTGC	1 cut(s)	508
Cac8I	GCNNGC	4 cut(s)	201, 285, 537, 609
CaiI	CAGNNNCTG	1 cut(s)	250
CfoI	GCGC	1 cut(s)	669
Cfr13I	GGNCC	1 cut(s)	371
ClaI	ATCGAT	1 cut(s)	627
CviAII	CATG	9 cut(s)	73, 230, 328, 560, 707, 744, 809, 884, 919
DdeI	CTNAG	5 cut(s)	251, 278, 345, 642, 894
DpnI	GATC	3 cut(s)	477, 721, 789
DpnII	GATC	3 cut(s)	475, 719, 787
Ecl136II	GAGCTC	1 cut(s)	199
Eco130I	CCWWGG	1 cut(s)	513
Eco24I	GRGCYC	2 cut(s)	201, 368
Eco31I	GGTCTC	2 cut(s)	26, 57
Eco47I	GGWCC	1 cut(s)	371
Eco53kI	GAGCTC	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	588
Eco88I	CYCGRG	1 cut(s)	374
EcoICRI	GAGCTC	1 cut(s)	199
EcoRII	CCWGG	1 cut(s)	171
EcoT14I	CCWWGG	1 cut(s)	513
EcoT38I	GRGCYC	2 cut(s)	201, 368
ErhI	CCWWGG	1 cut(s)	513
Esp3I	CGTCTC	1 cut(s)	371
FaeI	CATG	9 cut(s)	76, 233, 331, 563, 710, 747, 812, 887, 922
FaqI	GGGAC	1 cut(s)	646
FatI	CATG	9 cut(s)	72, 229, 327, 559, 706, 743, 808, 883, 918
FbaI	TGATCA	1 cut(s)	787
Fnu4HI	GCNGC	5 cut(s)	84, 549, 781, 816, 819
FokI	GGATG	2 cut(s)	92, 806
FriOI	GRGCYC	2 cut(s)	201, 368
Fsp4HI	GCNGC	5 cut(s)	84, 549, 781, 816, 819
GlaI	GCGC	1 cut(s)	668
GluI	GCNGC	5 cut(s)	84, 549, 781, 816, 819
GsuI	CTGGAG	2 cut(s)	91, 194
HapII	CCGG	3 cut(s)	132, 138, 369
HhaI	GCGC	1 cut(s)	669
Hin1II	CATG	9 cut(s)	76, 233, 331, 563, 710, 747, 812, 887, 922
Hin6I	GCGC	1 cut(s)	667
HinP1I	GCGC	1 cut(s)	667
HincII	GTYRAC	2 cut(s)	318, 772
HindII	GTYRAC	2 cut(s)	318, 772
HindIII	AAGCTT	2 cut(s)	398, 588
HinfI	GANTC	7 cut(s)	116, 122, 128, 178, 247, 414, 491
HpaI	GTTAAC	1 cut(s)	318
HpaII	CCGG	3 cut(s)	132, 138, 369
HphI	GGTGA	1 cut(s)	489
Hpy166II	GTNNAC	2 cut(s)	318, 772
Hpy188I	TCNGA	8 cut(s)	115, 121, 127, 145, 246, 252, 421, 568
Hpy188III	TCNNGA	4 cut(s)	23, 369, 467, 791
Hpy8I	GTNNAC	2 cut(s)	318, 772
HpyAV	CCTTC	1 cut(s)	563
HpyCH4III	ACNGT	2 cut(s)	37, 391
HpyCH4IV	ACGT	2 cut(s)	380, 688
HpyCH4V	TGCA	4 cut(s)	548, 559, 783, 818
HpyF10VI	GCNNNNNNNGC	7 cut(s)	200, 293, 406, 545, 664, 740, 889
HpyF3I	CTNAG	5 cut(s)	251, 278, 345, 642, 894
HpySE526I	ACGT	2 cut(s)	380, 688
Hsp92II	CATG	9 cut(s)	76, 233, 331, 563, 710, 747, 812, 887, 922
HspAI	GCGC	1 cut(s)	667
Kpn2I	TCCGGA	1 cut(s)	368
Ksp22I	TGATCA	1 cut(s)	787
KspAI	GTTAAC	1 cut(s)	318
Kzo9I	GATC	3 cut(s)	475, 719, 787
LmnI	GCTCC	4 cut(s)	116, 140, 146, 371
Lsp1109I	GCAGC	4 cut(s)	560, 767, 802, 830
LweI	GCATC	2 cut(s)	70, 214
MaeII	ACGT	2 cut(s)	380, 688
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	3 cut(s)	477, 721, 789
MboI	GATC	3 cut(s)	475, 719, 787
MboII	GAAGA	4 cut(s)	20, 164, 486, 878
MhlI	GDGCHC	3 cut(s)	201, 368, 541
MluCI	AATT	4 cut(s)	457, 660, 840, 924
MlyI	GAGTC	1 cut(s)	423
MmeI	TCCRAC	2 cut(s)	240, 709
MnlI	CCTC	6 cut(s)	115, 223, 246, 273, 282, 334
MroI	TCCGGA	1 cut(s)	368
MseI	TTAA	3 cut(s)	317, 455, 711
MspA1I	CMGCKG	2 cut(s)	86, 551
MspI	CCGG	3 cut(s)	132, 138, 369
MspR9I	CCNGG	1 cut(s)	173
Mva1269I	GAATGC	1 cut(s)	669
MvaI	CCWGG	1 cut(s)	173
MwoI	GCNNNNNNNGC	7 cut(s)	200, 293, 406, 545, 664, 740, 889
NdeII	GATC	3 cut(s)	475, 719, 787
NlaIII	CATG	9 cut(s)	76, 233, 331, 563, 710, 747, 812, 887, 922
NlaIV	GGNNCC	5 cut(s)	136, 142, 367, 373, 763
NmeAIII	GCCGAG	1 cut(s)	220
NmuCI	GTSAC	1 cut(s)	37
NspI	RCATGY	1 cut(s)	563
PaqCI	CACCTGC	1 cut(s)	508
PcsI	WCGNNNNNNNCGW	1 cut(s)	670
PctI	GAATGC	1 cut(s)	669
PfeI	GAWTC	6 cut(s)	116, 122, 128, 178, 247, 491
PkrI	GCNGC	5 cut(s)	85, 550, 782, 817, 820
PleI	GAGTC	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	422
PsiI	TTATAA	1 cut(s)	846
Psp124BI	GAGCTC	1 cut(s)	201
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspN4I	GGNNCC	5 cut(s)	136, 142, 367, 373, 763
PspPI	GGNCC	1 cut(s)	371
PstI	CTGCAG	3 cut(s)	550, 785, 820
PstNI	CAGNNNCTG	1 cut(s)	250
PvuII	CAGCTG	1 cut(s)	551
SacI	GAGCTC	1 cut(s)	201
SaqAI	TTAA	3 cut(s)	317, 455, 711
SatI	GCNGC	5 cut(s)	84, 549, 781, 816, 819
Sau3AI	GATC	3 cut(s)	475, 719, 787
Sau96I	GGNCC	1 cut(s)	371
SchI	GAGTC	1 cut(s)	423
ScrFI	CCNGG	1 cut(s)	173
SduI	GDGCHC	3 cut(s)	201, 368, 541
SfaNI	GCATC	2 cut(s)	70, 214
SfcI	CTRYAG	4 cut(s)	387, 546, 781, 816
SinI	GGWCC	1 cut(s)	371
Sse9I	AATT	4 cut(s)	457, 660, 840, 924
SsiI	CCGC	1 cut(s)	84
SstI	GAGCTC	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	171
StyI	CCWWGG	1 cut(s)	513
TaaI	ACNGT	2 cut(s)	37, 391
TaiI	ACGT	2 cut(s)	383, 691
TaqI	TCGA	3 cut(s)	189, 466, 627
TasI	AATT	4 cut(s)	457, 660, 840, 924
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	6 cut(s)	116, 122, 128, 178, 247, 491
Tru1I	TTAA	3 cut(s)	317, 455, 711
Tru9I	TTAA	3 cut(s)	317, 455, 711
TscAI	CASTG	2 cut(s)	781, 790
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	4 cut(s)	548, 780, 815, 818
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	3 cut(s)	792, 848, 907
TspGWI	ACGGA	1 cut(s)	468
TspRI	CASTG	2 cut(s)	781, 790
VpaK11BI	GGWCC	1 cut(s)	371
XapI	RAATTY	3 cut(s)	457, 660, 840
XceI	RCATGY	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.